mRNA_M-pyrifera_M_contig67126.16241.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67126.16241.1
Unique NamemRNA_M-pyrifera_M_contig67126.16241.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A6S9E232_HETAK (Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E232_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 2.610e-14
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    7 EDFAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            E   +++R+HLSRLIVY++S +  LQR+VAE+LANEAV+ ERQVQIVELGGL LLLPLT
Sbjct:   23 EGLTKLLRVHLSRLIVYAESADCHLQRQVAEKLANEAVKPERQVQIVELGGLKLLLPLT 81
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A2D4C729_PYTIN (Vacuolar protein 8 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4C729_PYTIN)

HSP 1 Score: 79.0 bits (193), Expect = 9.480e-14
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 AGED-FAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            A ED F E +R++L RLIVY+KS +  LQREVAE+LANEAV+ +RQVQIVEL GL LLLPLT
Sbjct:   18 ADEDTFTEALRVNLQRLIVYAKSADSTLQREVAEKLANEAVKPDRQVQIVELDGLKLLLPLT 79
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A5D6Y1Z7_9STRA (Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Z7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.550e-13
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 AGEDFAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            + + F E +R++L RLIVY+KS + +LQREVAE+LANEAV+ +RQVQIVEL GL LLLPLT
Sbjct:   20 SDDAFTEALRVNLQRLIVYAKSADTSLQREVAEKLANEAVKPDRQVQIVELEGLKLLLPLT 80
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A835YNM9_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.180e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    7 EDFAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            E  +  +R+HLSRLI Y++S + +LQR+VAE+LANEAVR ERQVQI ELGGL LLLPLT
Sbjct:   21 EGLSTALRIHLSRLIAYAESADVSLQRQVAEKLANEAVRPERQVQIAELGGLRLLLPLT 79
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: F0WLI4_9STRA (Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLI4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.970e-13
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 AGEDFAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            + E F E ++++L RLI Y+KS + +LQREVAE+LANEAV+ +RQVQIVEL GL+LLLPLT
Sbjct:   18 SDEGFTEALQINLQRLIAYAKSADTSLQREVAEKLANEAVKPDRQVQIVELCGLELLLPLT 78
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A7S1TZQ4_9STRA (Vacuolar protein 8 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZQ4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.290e-13
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   16 AEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            +E+MR  LSRLI+Y++S++  LQR+VAE+LANEAV+  RQVQIVELGGL+LLLPLT
Sbjct:   76 SEVMRTQLSRLIIYAESSDVQLQRDVAEKLANEAVKPARQVQIVELGGLELLLPLT 131
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: H3HCQ8_PHYRM (Vacuolar protein 8 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCQ8_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 4.580e-13
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    7 EDFAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPL 180
            E F E +R++L RLIVY++S + ALQREVAE+LANEAV+ +RQVQIVEL GL+LLLPL
Sbjct:  199 EAFTEALRVNLQRLIVYARSADTALQREVAEKLANEAVKPDRQVQIVELDGLELLLPL 256
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A397ACU4_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ACU4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.450e-13
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 AGEDFAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            + E F + ++++L RLI Y+KS +  LQREVAE+LANEAV+ +RQVQIVEL GL LLLPLT
Sbjct:   19 SDEGFTDALKINLQRLIAYAKSADANLQREVAEKLANEAVKPDRQVQIVELDGLKLLLPLT 79
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BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A8J2SA02_9STRA (Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SA02_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.680e-13
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   10 DFAEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            ++   + LHL+RLI Y++S +P LQREVAE+LAN AV++ERQVQIV LGGL LL+PLT
Sbjct:   25 EYIRQLELHLTRLIAYAESADPTLQREVAEKLANAAVKAERQVQIVNLGGLRLLVPLT 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Match: A0A7S1XQE0_9STRA (Vacuolar protein 8 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQE0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.330e-13
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   16 AEMMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLLLPLT 183
            +E+MR  LSRLI+Y++S++  LQR+VAE+LANEAV+  RQVQIVELGGL+LLLPLT
Sbjct:   76 SEVMRTQLSRLIIYAESSDVQLQRDVAEKLANEAVKPARQVQIVELGGLELLLPLT 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67126.16241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6S9E232_HETAK2.610e-1469.49Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A2D4C729_PYTIN9.480e-1469.35Vacuolar protein 8 n=2 Tax=Pythium TaxID=4797 RepI... [more]
A0A5D6Y1Z7_9STRA1.550e-1365.57Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID... [more]
A0A835YNM9_9STRA2.180e-1367.80Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
F0WLI4_9STRA2.970e-1363.93Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 T... [more]
A0A7S1TZQ4_9STRA3.290e-1369.64Vacuolar protein 8 n=1 Tax=Phaeomonas parva TaxID=... [more]
H3HCQ8_PHYRM4.580e-1368.97Vacuolar protein 8 n=1 Tax=Phytophthora ramorum Ta... [more]
A0A397ACU4_9STRA6.450e-1362.30Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI... [more]
A0A8J2SA02_9STRA6.680e-1363.79Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata ... [more]
A0A7S1XQE0_9STRA7.330e-1369.64Vacuolar protein 8 n=4 Tax=Phaeomonas parva TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67126contigM-pyrifera_M_contig67126:75..827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog115417.EPrPW00000019086
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0007275,GO:0008134,GO:0008150,GO:0009791,GO:0022622,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0090696,GO:0099402
EggNOG free text desc.Armadillo/beta-catenin-like repeat
EggNOG OGs1MC21@121069,2E3D6@1,2SAGE@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size753
Cds size732
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.5330048-UTR-M-pyrifera_M_contig67126:74..951622816561.5330048-UTR-M-pyrifera_M_contig67126:74..95Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67126 75..95 +
1692278047.6518745-UTR-M-pyrifera_M_contig67126:74..951692278047.6518745-UTR-M-pyrifera_M_contig67126:74..95Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67126 75..95 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.5460525-CDS-M-pyrifera_M_contig67126:95..8271622816561.5460525-CDS-M-pyrifera_M_contig67126:95..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67126 96..827 +
1692278047.665872-CDS-M-pyrifera_M_contig67126:95..8271692278047.665872-CDS-M-pyrifera_M_contig67126:95..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67126 96..827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67126.16241.1prot_M-pyrifera_M_contig67126.16241.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67126 96..827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67126.16241.1

>prot_M-pyrifera_M_contig67126.16241.1 ID=prot_M-pyrifera_M_contig67126.16241.1|Name=mRNA_M-pyrifera_M_contig67126.16241.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=244bp
MMRLHLSRLIVYSKSTNPALQREVAERLANEAVRSERQVQIVELGGLDLL
LPLTESKDPEVQRLAAHALANLSVAAGNQALIAEKGGIGMIVSLLERSGS
EAVQRQAAKALANLAVLSENKRKIAQGGALDPLIRLASGGKTPLKIECVA
ALANLAVNDSNETEIGEKGGVEPIVELARKTDDPELLAQCARALRNLSVQ
EPNRDRIRAVGGAAVLLTMAKSDDRRIRQQSKRALRNLGLDQSE
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mRNA from alignment at M-pyrifera_M_contig67126:75..827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67126.16241.1 ID=mRNA_M-pyrifera_M_contig67126.16241.1|Name=mRNA_M-pyrifera_M_contig67126.16241.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=753bp|location=Sequence derived from alignment at M-pyrifera_M_contig67126:75..827+ (Macrocystis pyrifera P11B4 male)
GCAGGTGAGGACTTTGCTGAGATGATGCGGCTGCACCTGTCTCGTCTGAT
CGTGTACTCCAAGTCGACGAACCCTGCGTTGCAACGGGAGGTAGCGGAGC
GTTTGGCGAACGAGGCGGTTCGGTCGGAGCGGCAGGTGCAGATCGTGGAG
CTGGGCGGTCTGGACTTGCTGCTGCCGCTGACGGAGAGCAAGGACCCCGA
GGTGCAGCGTCTTGCGGCACACGCTCTGGCCAACTTGTCGGTGGCTGCTG
GGAACCAGGCGCTGATAGCGGAGAAGGGCGGGATTGGCATGATCGTGTCG
CTGTTGGAGCGCAGTGGGTCGGAGGCGGTGCAGCGGCAAGCGGCGAAGGC
GCTGGCGAATTTGGCCGTTCTTTCCGAGAACAAGCGCAAGATTGCGCAGG
GAGGTGCGTTGGATCCGCTGATCCGCCTGGCTTCGGGAGGCAAAACGCCG
CTCAAGATCGAGTGCGTGGCAGCACTGGCCAACTTGGCCGTGAACGACAG
CAACGAGACGGAAATCGGGGAAAAAGGAGGCGTGGAGCCCATTGTGGAGC
TGGCCAGGAAAACGGACGACCCTGAACTCCTGGCACAATGTGCGAGGGCA
CTGCGCAACCTGTCAGTCCAAGAACCGAACAGAGACCGCATCAGAGCAGT
GGGAGGCGCCGCCGTCCTCCTCACCATGGCCAAGTCAGACGACCGAAGAA
TCAGACAACAGTCAAAACGAGCACTCAGAAACCTTGGACTCGACCAATCC
GAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67126:75..827+

>mRNA_M-pyrifera_M_contig67126.16241.1 ID=mRNA_M-pyrifera_M_contig67126.16241.1|Name=mRNA_M-pyrifera_M_contig67126.16241.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1464bp|location=Sequence derived from alignment at M-pyrifera_M_contig67126:75..827+ (Macrocystis pyrifera P11B4 male)
ATGATGCGGCTGCACCTGTCTCGTCTGATCGTGTACTCCAAGTCGACGAA
CCCTGCGTTGCAACGGGAGGTAGCGGAGCGTTTGGCGAACGAGGCGGTTC
GGTCGGAGCGGCAGGTGCAGATCGTGGAGCTGGGCGGTCTGGACTTGCTG
CTGCCGCTGACGGAGAGCAAGGACCCCGAGGTGCAGCGTCTTGCGGCACA
CGCTCTGGCCAACTTGTCGGTGGCTGCTGGGAACCAGGCGCTGATAGCGG
AGAAGGGCGGGATTGGCATGATCGTGTCGCTGTTGGAGCGCAGTGGGTCG
GAGGCGGTGCAGCGGCAAGCGGCGAAGGCGCTGGCGAATTTGGCCGTTCT
TTCCGAGAACAAGCGCAAGATTGCGCAGGGAGGTGCGTTGGATCCGCTGA
TCCGCCTGGCTTCGGGAGGCAAAACGCCGCTCAAGATCGAGTGCGTGGCA
GCACTGGCCAACTTGGCCGTGAACGACAGCAACGAGACGGAAATCGGGGA
AAAAGGAGGCGTGGAGCCCATTGTGGAGCTGGCCAGGAAAACGGACGACC
CTGAACTCCTGGCACAATGTGCGAGGGCACTGCGCAACCTGTCAGTCCAA
GAACCGAACAGAGACCGCATCAGAGCAGTGGGAGGCGCCGCCGTCCTCCT
CACCATGGCCAAGTCAGACGACCGAAGAATCAGACAACAGTCAAAACGAG
CACTCAGAAACCTTGGACTCGACCAATCCGAAATGATGCGGCTGCACCTG
TCTCGTCTGATCGTGTACTCCAAGTCGACGAACCCTGCGTTGCAACGGGA
GGTAGCGGAGCGTTTGGCGAACGAGGCGGTTCGGTCGGAGCGGCAGGTGC
AGATCGTGGAGCTGGGCGGTCTGGACTTGCTGCTGCCGCTGACGGAGAGC
AAGGACCCCGAGGTGCAGCGTCTTGCGGCACACGCTCTGGCCAACTTGTC
GGTGGCTGCTGGGAACCAGGCGCTGATAGCGGAGAAGGGCGGGATTGGCA
TGATCGTGTCGCTGTTGGAGCGCAGTGGGTCGGAGGCGGTGCAGCGGCAA
GCGGCGAAGGCGCTGGCGAATTTGGCCGTTCTTTCCGAGAACAAGCGCAA
GATTGCGCAGGGAGGTGCGTTGGATCCGCTGATCCGCCTGGCTTCGGGAG
GCAAAACGCCGCTCAAGATCGAGTGCGTGGCAGCACTGGCCAACTTGGCC
GTGAACGACAGCAACGAGACGGAAATCGGGGAAAAAGGAGGCGTGGAGCC
CATTGTGGAGCTGGCCAGGAAAACGGACGACCCTGAACTCCTGGCACAAT
GTGCGAGGGCACTGCGCAACCTGTCAGTCCAAGAACCGAACAGAGACCGC
ATCAGAGCAGTGGGAGGCGCCGCCGTCCTCCTCACCATGGCCAAGTCAGA
CGACCGAAGAATCAGACAACAGTCAAAACGAGCACTCAGAAACCTTGGAC
TCGACCAATCCGAA
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