mRNA_M-pyrifera_M_contig67096.16236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67096.16236.1
Unique NamemRNA_M-pyrifera_M_contig67096.16236.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.750e-32
Identity = 58/77 (75.32%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARP-DSGTYRLLALVGPPGSAKTTMVRLLAQEMELDLAEWQ 228
            +D++WPDKHRPRDIS LAVH+KKVDEVRHWMT+AL ARP +    R+LALVGPPGSAK+TMVRLLAQ+M+++LAEWQ
Sbjct:   39 EDQLWPDKHRPRDISCLAVHSKKVDEVRHWMTLALAARPGNEEACRVLALVGPPGSAKSTMVRLLAQDMDVELAEWQ 115
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A067M7L2_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067M7L2_9AGAM)

HSP 1 Score: 79.7 bits (195), Expect = 1.760e-15
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTYR----LLALVGPPGSAKTTMVRLLAQEMELDLAEWQ 228
            DD++W DK+ P+    LAVH +KV++VR W+  A D+ P S   R    +LAL GP G+ KT  +R+LA+EM + + EWQ
Sbjct:   78 DDQLWVDKYEPQTAEDLAVHKRKVEDVRKWLGEAFDSSPGSTKRRKYRRILALTGPAGTGKTVTIRVLAKEMNVQVVEWQ 157
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A0D0B0N3_9AGAM (Uncharacterized protein n=1 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0D0B0N3_9AGAM)

HSP 1 Score: 78.6 bits (192), Expect = 4.490e-15
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTY---RLLALVGPPGSAKTTMVRLLAQEMELDLAEWQVRLIHTGSKCY 261
            DD +W DK+ P   + LAVH +KV++VR W+  A +  P        R+L L GP G+AKTT VR+LA+EM  ++ EW+  +   GS  +
Sbjct:   94 DDRLWVDKYEPTIEADLAVHKRKVEDVRRWILEAFEGGPTGKLRKYRRILVLTGPAGTAKTTTVRVLAREMGFEIVEWRNSMSERGSSAF 183
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A369K9Y4_HYPMA (Cell cycle checkpoint protein RAD17 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K9Y4_HYPMA)

HSP 1 Score: 78.2 bits (191), Expect = 6.130e-15
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTY---RLLALVGPPGSAKTTMVRLLAQEMELDLAEWQ 228
            DD MW D + P   + LAVH KKV++VR W+T A +  P        RLLAL GP G+ KTT VR+LA+EM  ++ EW+
Sbjct:   85 DDRMWVDIYEPTTEAELAVHKKKVEDVRRWLTEAFEGGPSGKLKKYRRLLALTGPAGTGKTTTVRVLAEEMGFEIMEWR 163
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A4S4KPN3_9AGAM (Uncharacterized protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KPN3_9AGAM)

HSP 1 Score: 77.8 bits (190), Expect = 8.350e-15
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTY---RLLALVGPPGSAKTTMVRLLAQEMELDLAEWQ 228
            DD +W D++ P+  + +AVH +KV++VR W   A +  P        R+L L GP G+AKTT VRLLA+EM+ D++EW+
Sbjct:   76 DDRLWVDRYEPQSETEVAVHKRKVEDVRQWFQEAFEGGPTGKLKKYRRVLVLTGPAGTAKTTTVRLLAKEMDFDISEWR 154
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: UPI001B862695 (Rad17 cell cycle checkpoint protein-domain-containing protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B862695)

HSP 1 Score: 77.8 bits (190), Expect = 8.380e-15
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTY---RLLALVGPPGSAKTTMVRLLAQEMELDLAEWQVRLIHTGSKCY 261
            DD +W DK+ P   + LAVH +KV++VR W++ A +  P        R+L L GP G+AKTT VR+LA+EM  ++ EW+  +   G   +
Sbjct:   88 DDRLWVDKYEPTIEADLAVHKRKVEDVRRWLSEAFEGGPTGKLRKYRRILVLTGPAGTAKTTTVRVLAREMGFEIVEWRNSMSERGPSAF 177
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A5C3QNH1_9AGAR (Rad17 cell cycle checkpoint protein-domain-containing protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QNH1_9AGAR)

HSP 1 Score: 77.8 bits (190), Expect = 8.380e-15
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTYR-LLALVGPPGSAKTTMVRLLAQEMELDLAEWQ 228
            DD  W D++ P+D + LAVH +KV +VR W+  AL        YR +LAL GP GSAKTT +R+LA+++ ++L EW+
Sbjct:   95 DDRQWVDRYEPKDETELAVHVRKVADVRRWLEEALGLSSQLKDYRRILALTGPAGSAKTTTLRILAKQLGVELLEWR 171
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A5B1R8U6_9AGAM (Rad17-domain-containing protein n=1 Tax=Dentipellis sp. KUC8613 TaxID=1883078 RepID=A0A5B1R8U6_9AGAM)

HSP 1 Score: 77.8 bits (190), Expect = 8.390e-15
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTYRLLALVGPPGSAKTTMVRLLAQEMELDLAEWQ 228
            D  +W D   PR  S LAVH +KV +VR W+  ALDA   S   RLL L+GP GS KT  VR+LA+EM +D+ EW+
Sbjct:  123 DGRLWVDIFEPRTESELAVHKRKVADVRGWLGEALDAGKLSKYRRLLVLIGPAGSGKTATVRVLAREMGIDIIEWR 198
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A8H4QGF9_9AGAR (AAA domain-containing protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4QGF9_9AGAR)

HSP 1 Score: 77.4 bits (189), Expect = 1.140e-14
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTY---RLLALVGPPGSAKTTMVRLLAQEMELDLAEWQVRLIHTGS 252
            DD +W DK+ P   + LAVH +KV++VR W+  A +  P        R+LAL GP G+ KTT +++LA+EM+ ++ EW+  +  T S
Sbjct:   43 DDSLWVDKYEPTTEAQLAVHVRKVEDVRRWLNEAFEGGPSGKLTKYRRILALTGPAGTGKTTTIKVLAKEMDFEILEWRNAIAETLS 129
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BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Match: A0A2H3D926_ARMGA (Rad17-domain-containing protein n=3 Tax=Armillaria TaxID=47424 RepID=A0A2H3D926_ARMGA)

HSP 1 Score: 77.4 bits (189), Expect = 1.140e-14
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 DDEMWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTYR----LLALVGPPGSAKTTMVRLLAQEMELDLAEWQVRLIHTGS 252
            D ++W D + P   + LAVH KKV++VR W+  A +  P SG  R    +LAL GP G+AKTT VR+LA+EM+ ++ EW+  ++   +
Sbjct:   82 DSKLWVDLYEPTTEAELAVHVKKVEDVRRWLVEAFEGGP-SGKLRKYRRILALTGPAGTAKTTTVRILAREMDFEILEWRNAIVENST 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67096.16236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBK1_9PHAE9.750e-3275.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A067M7L2_9AGAM1.760e-1545.00Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
A0A0D0B0N3_9AGAM4.490e-1541.11Uncharacterized protein n=1 Tax=Suillus luteus UH-... [more]
A0A369K9Y4_HYPMA6.130e-1548.10Cell cycle checkpoint protein RAD17 n=1 Tax=Hypsiz... [more]
A0A4S4KPN3_9AGAM8.350e-1544.30Uncharacterized protein n=1 Tax=Phellinidium pouza... [more]
UPI001B8626958.380e-1540.00Rad17 cell cycle checkpoint protein-domain-contain... [more]
A0A5C3QNH1_9AGAR8.380e-1546.75Rad17 cell cycle checkpoint protein-domain-contain... [more]
A0A5B1R8U6_9AGAM8.390e-1551.32Rad17-domain-containing protein n=1 Tax=Dentipelli... [more]
A0A8H4QGF9_9AGAR1.140e-1440.23AAA domain-containing protein n=1 Tax=Agrocybe ped... [more]
A0A2H3D926_ARMGA1.140e-1442.05Rad17-domain-containing protein n=3 Tax=Armillaria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67096contigM-pyrifera_M_contig67096:396..1116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.6
Seed ortholog evalue5.1e-11
Seed eggNOG ortholog78898.MVEG_05724T0
Preferred namerad17
KEGG koko:K06662
KEGG Pathwayko04111,ko04113,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0017076,GO:0022402,GO:0022414,GO:0030554,GO:0031389,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033314,GO:0033554,GO:0034641,GO:0035639,GO:0035825,GO:0036094,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421
EggNOG free text desc.cell cycle checkpoint protein
EggNOG OGs39UQ0@33154,3NWWG@4751,COG0470@1,KOG1970@2759
COG Functional cat.DL
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size264
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67096.16236.1prot_M-pyrifera_M_contig67096.16236.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67096 405..1116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.2727096-UTR-M-pyrifera_M_contig67096:395..4041622816561.2727096-UTR-M-pyrifera_M_contig67096:395..404Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67096 396..404 +
1692278047.5468223-UTR-M-pyrifera_M_contig67096:395..4041692278047.5468223-UTR-M-pyrifera_M_contig67096:395..404Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67096 396..404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.2876787-CDS-M-pyrifera_M_contig67096:404..4641622816561.2876787-CDS-M-pyrifera_M_contig67096:404..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67096 405..464 +
1692278047.5595348-CDS-M-pyrifera_M_contig67096:404..4641692278047.5595348-CDS-M-pyrifera_M_contig67096:404..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67096 405..464 +
1622816561.301725-CDS-M-pyrifera_M_contig67096:921..11161622816561.301725-CDS-M-pyrifera_M_contig67096:921..1116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67096 922..1116 +
1692278047.569201-CDS-M-pyrifera_M_contig67096:921..11161692278047.569201-CDS-M-pyrifera_M_contig67096:921..1116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67096 922..1116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67096.16236.1

>prot_M-pyrifera_M_contig67096.16236.1 ID=prot_M-pyrifera_M_contig67096.16236.1|Name=mRNA_M-pyrifera_M_contig67096.16236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MWPDKHRPRDISGLAVHAKKVDEVRHWMTMALDARPDSGTYRLLALVGPP
GSAKTTMVRLLAQEMELDLAEWQVRLIHTGSKCY*
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mRNA from alignment at M-pyrifera_M_contig67096:396..1116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67096.16236.1 ID=mRNA_M-pyrifera_M_contig67096.16236.1|Name=mRNA_M-pyrifera_M_contig67096.16236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=721bp|location=Sequence derived from alignment at M-pyrifera_M_contig67096:396..1116+ (Macrocystis pyrifera P11B4 male)
GACGATGAGATGTGGCCCGATAAGCACCGCCCGAGGGATATTTCGGGGCT
TGCTGTGCACGCTAAGAAGGTGAGAGTGCGGTACGGTACGGGCACGGTAC
GGTACGGGTACGGTACGGTACGGTACGGTACGATACGGCTCGGGTATGTA
AGCGGGTGAATGTACCTGGGAAAAAATGTTCGTGTAGGTGGTAAACGCGT
CTTTGTGCTTTGGGTGTCGTCTGGTGTGTCCGGTATGGTTTGGTATGGTT
TGGGTTGGGCTGGTTTTGTTTGGTTTGGTTTGGGGGGGGGGCGGGGGGTG
GTGTTTCGCTTCTGGTTGATTGTGTGCTTTTCGAGCTCTATAGGTTAGTA
TTTTCTCTGGTATTGTACTTGCGCTTGACTAAAATGCAAACAACACTCTT
ATGTTTGCGCCGTTTTAAATTGCGTTTTTGCGGTATTGCATTAGGCCATT
GATTTTTGTATCGGTGCTCCGCTGTGTTTTCGTATGATCTGCTTTCTTTT
CTGTGATTGCACCACTGCATCGTCAGGTGGACGAAGTGCGCCACTGGATG
ACGATGGCCCTGGATGCTCGGCCGGACAGCGGCACATACCGCCTTCTAGC
CCTCGTGGGACCCCCTGGCTCCGCGAAGACAACGATGGTTAGACTCCTGG
CGCAGGAGATGGAACTGGACCTGGCCGAGTGGCAGGTGAGACTGATACAT
ACTGGTAGCAAATGCTATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67096:396..1116+

>mRNA_M-pyrifera_M_contig67096.16236.1 ID=mRNA_M-pyrifera_M_contig67096.16236.1|Name=mRNA_M-pyrifera_M_contig67096.16236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig67096:396..1116+ (Macrocystis pyrifera P11B4 male)
ATGTGGCCCGATAAGCACCGCCCGAGGGATATTTCGGGGCTTGCTGTGCA
CGCTAAGAAGATGTGGCCCGATAAGCACCGCCCGAGGGATATTTCGGGGC
TTGCTGTGCACGCTAAGAAGGTGGACGAAGTGCGCCACTGGATGACGATG
GCCCTGGATGCTCGGCCGGACAGCGGCACATACCGCCTTCTAGCCCTCGT
GGGACCCCCTGGCTCCGCGAAGACAACGATGGTTAGACTCCTGGCGCAGG
AGATGGAACTGGACCTGGCCGAGTGGCAGGTGAGACTGATACATACTGGT
AGCAAATGCTATTAAGTGGACGAAGTGCGCCACTGGATGACGATGGCCCT
GGATGCTCGGCCGGACAGCGGCACATACCGCCTTCTAGCCCTCGTGGGAC
CCCCTGGCTCCGCGAAGACAACGATGGTTAGACTCCTGGCGCAGGAGATG
GAACTGGACCTGGCCGAGTGGCAGGTGAGACTGATACATACTGGTAGCAA
ATGCTATTAA
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