mRNA_M-pyrifera_M_contig67040.16226.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67040.16226.1
Unique NamemRNA_M-pyrifera_M_contig67040.16226.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67040.16226.1 vs. uniprot
Match: A0A7S4E965_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E965_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.030e-8
Identity = 61/193 (31.61%), Postives = 89/193 (46.11%), Query Frame = 1 
Query:   40 FVHIHKAGGTSLYNMAIAAGE-NVAPGNGN--GESGKFATYEPTSVAQLPLT--CKVATQEARLNDYTFLAVEVPVEAPLCSP--KEFRYVLSWREPLERIVSHARYHKLSHFGLFFDARLHSGDMSTYFNKDYAREALEEGSGGEGVQNIKYHSPVNVDSFAVRQLLGYNTFRL-PFGTIDSVHAERAKAVI 594
            F+H+HKAGGT++ ++A  + E N A  N N  G+  +  +  P   A   L   CK+  QEA      FLAVE  ++    +     F +V   REP++RIVSH R+  +S        RL S               +  G+ G  +Q         VD+F VR LLG + +   P G I + HA +A  V+
Sbjct:  143 FLHLHKAGGTTVCHVARMSNELNAAKRNCNAPGDGPRTLSSAPFGYANKKLDGHCKLRRQEALKRQVDFLAVERWLDTRTFASCHTSFFFVTVLREPVQRIVSHCRFEHISAKEALAWTRLPS---------------VAAGAAGTPIQR----GAAVVDNFYVRSLLGGDVYETTPPGKITAAHASQAIEVL 316
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67040.16226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4E965_9STRA4.030e-831.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67040contigM-pyrifera_M_contig67040:86..685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.7529438-CDS-M-pyrifera_M_contig67040:85..6851622816560.7529438-CDS-M-pyrifera_M_contig67040:85..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67040 86..685 +
1692278047.2762706-CDS-M-pyrifera_M_contig67040:85..6851692278047.2762706-CDS-M-pyrifera_M_contig67040:85..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67040 86..685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67040.16226.1prot_M-pyrifera_M_contig67040.16226.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67040 86..685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67040.16226.1

>prot_M-pyrifera_M_contig67040.16226.1 ID=prot_M-pyrifera_M_contig67040.16226.1|Name=mRNA_M-pyrifera_M_contig67040.16226.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
GPCPSCRDEVPIRFVHIHKAGGTSLYNMAIAAGENVAPGNGNGESGKFAT
YEPTSVAQLPLTCKVATQEARLNDYTFLAVEVPVEAPLCSPKEFRYVLSW
REPLERIVSHARYHKLSHFGLFFDARLHSGDMSTYFNKDYAREALEEGSG
GEGVQNIKYHSPVNVDSFAVRQLLGYNTFRLPFGTIDSVHAERAKAVIRN
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mRNA from alignment at M-pyrifera_M_contig67040:86..685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67040.16226.1 ID=mRNA_M-pyrifera_M_contig67040.16226.1|Name=mRNA_M-pyrifera_M_contig67040.16226.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig67040:86..685+ (Macrocystis pyrifera P11B4 male)
GGACCGTGTCCTTCTTGTCGAGATGAAGTACCCATCCGTTTCGTACATAT
TCACAAGGCCGGTGGCACATCTCTCTACAACATGGCGATTGCTGCAGGGG
AAAATGTGGCACCTGGGAATGGGAATGGGGAGAGTGGCAAGTTTGCCACA
TACGAGCCTACGAGCGTGGCGCAGTTGCCGCTTACATGCAAAGTAGCGAC
ACAGGAGGCAAGATTGAATGACTACACCTTCCTTGCCGTCGAAGTACCGG
TGGAAGCACCCCTCTGCAGCCCAAAGGAGTTTCGCTATGTACTTTCCTGG
AGAGAGCCGCTGGAACGTATTGTCTCCCATGCGAGGTACCATAAACTCTC
ACATTTTGGTCTTTTCTTTGACGCGAGACTGCACTCTGGAGACATGAGTA
CCTACTTTAACAAAGACTACGCCCGAGAAGCACTGGAAGAGGGGAGTGGA
GGTGAAGGTGTGCAAAACATCAAGTACCATAGTCCAGTCAATGTTGACAG
CTTCGCAGTGCGCCAACTCCTCGGTTACAACACCTTTCGACTCCCGTTTG
GAACAATCGATTCTGTACACGCGGAGAGAGCAAAGGCCGTGATCCGAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67040:86..685+

>mRNA_M-pyrifera_M_contig67040.16226.1 ID=mRNA_M-pyrifera_M_contig67040.16226.1|Name=mRNA_M-pyrifera_M_contig67040.16226.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig67040:86..685+ (Macrocystis pyrifera P11B4 male)
GGACCGTGTCCTTCTTGTCGAGATGAAGTACCCATCCGTTTCGTACATAT
TCACAAGGCCGGTGGCACATCTCTCTACAACATGGCGATTGCTGCAGGGG
AAAATGTGGCACCTGGGAATGGGAATGGGGAGAGTGGCAAGTTTGCCACA
TACGAGCCTACGAGCGTGGCGCAGTTGCCGCTTACATGCAAAGTAGCGAC
ACAGGAGGCAAGATTGAATGACTACACCTTCCTTGCCGTCGAAGTACCGG
TGGAAGCACCCCTCTGCAGCCCAAAGGAGTTTCGCTATGTACTTTCCTGG
AGAGAGCCGCTGGAACGTATTGTCTCCCATGCGAGGTACCATAAACTCTC
ACATTTTGGTCTTTTCTTTGACGCGAGACTGCACTCTGGAGACATGAGTA
CCTACTTTAACAAAGACTACGCCCGAGAAGCACTGGAAGAGGGGAGTGGA
GGTGAAGGTGTGCAAAACATCAAGTACCATAGTCCAGTCAATGTTGACAG
CTTCGCAGTGCGCCAACTCCTCGGTTACAACACCTTTCGACTCCCGTTTG
GAACAATCGATTCTGTACACGCGGAGAGAGCAAAGGCCGTGATCCGAAAC
GGACCGTGTCCTTCTTGTCGAGATGAAGTACCCATCCGTTTCGTACATAT
TCACAAGGCCGGTGGCACATCTCTCTACAACATGGCGATTGCTGCAGGGG
AAAATGTGGCACCTGGGAATGGGAATGGGGAGAGTGGCAAGTTTGCCACA
TACGAGCCTACGAGCGTGGCGCAGTTGCCGCTTACATGCAAAGTAGCGAC
ACAGGAGGCAAGATTGAATGACTACACCTTCCTTGCCGTCGAAGTACCGG
TGGAAGCACCCCTCTGCAGCCCAAAGGAGTTTCGCTATGTACTTTCCTGG
AGAGAGCCGCTGGAACGTATTGTCTCCCATGCGAGGTACCATAAACTCTC
ACATTTTGGTCTTTTCTTTGACGCGAGACTGCACTCTGGAGACATGAGTA
CCTACTTTAACAAAGACTACGCCCGAGAAGCACTGGAAGAGGGGAGTGGA
GGTGAAGGTGTGCAAAACATCAAGTACCATAGTCCAGTCAATGTTGACAG
CTTCGCAGTGCGCCAACTCCTCGGTTACAACACCTTTCGACTCCCGTTTG
GAACAATCGATTCTGTACACGCGGAGAGAGCAAAGGCCGTGATCCGAAAC
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