mRNA_M-pyrifera_M_contig67037.16224.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67037.16224.1
Unique NamemRNA_M-pyrifera_M_contig67037.16224.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67037.16224.1 vs. uniprot
Match: A0A7S2REZ6_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2REZ6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.810e-8
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   79 LASLVPDPKPTETLLSAVPVVYPTNASTSFKYKATLVPGRGKRGKVSKSAVEAAIRNAKGSSTEREVDLIRLIPDDSIVQ 318
            L S   +PK  +T+L A+PV  P  A+ ++K++  +VPG  KRG+ SK+A E  +R    S+TERE +LI+ I D+ +VQ
Sbjct:  901 LKSFTCNPKAEDTILYALPVCGPPQATLNYKHRIKIVPGSMKRGRASKTATEILVR--ANSTTEREKELIKYIIDNQLVQ 978
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BLAST of mRNA_M-pyrifera_M_contig67037.16224.1 vs. uniprot
Match: A0A5K3F203_MESCO (NFACT-C domain-containing protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3F203_MESCO)

HSP 1 Score: 52.8 bits (125), Expect = 9.890e-6
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   25 GEEEEEEGEIVDAGLKMILASLVPDPKPTETLLSAVPVVYPTNASTSFKYKATLVPGRGKRGKVSKSAVEAAIRNAKGSSTE-------REVDLIRLIP 300
            G+EEE+EG +     +  L +L   P   +TLL A+P   P +A   +KYKA L+PG  KRGK++K A++   ++   S  E       RE D+ R++P
Sbjct:  410 GKEEEDEG-VAWVAEESPLETLTGQPVDEDTLLFALPFCAPYSALAKYKYKAKLIPGTQKRGKITKLAIQHFSQDKAASQLEKQLIQCLREEDVCRVLP 507
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BLAST of mRNA_M-pyrifera_M_contig67037.16224.1 vs. uniprot
Match: A0A0R3UJK3_MESCO (Uncharacterized protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UJK3_MESCO)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-5
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   25 GEEEEEEGEIVDAGLKMILASLVPDPKPTETLLSAVPVVYPTNASTSFKYKATLVPGRGKRGKVSKSAVEAAIRNAKGSSTE-------REVDLIRLIP 300
            G+EEE+EG +     +  L +L   P   +TLL A+P   P +A   +KYKA L+PG  KRGK++K A++   ++   S  E       RE D+ R++P
Sbjct:  855 GKEEEDEG-VAWVAEESPLETLTGQPVDEDTLLFALPFCAPYSALAKYKYKAKLIPGTQKRGKITKLAIQHFSQDKAASQLEKQLIQCLREEDVCRVLP 952
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BLAST of mRNA_M-pyrifera_M_contig67037.16224.1 vs. uniprot
Match: A0A061RK70_9CHLO (Nuclear export mediator factor nemf-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK70_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 9.380e-5
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:   79 LASLVPDPKPTETLLSAVPVVYPTNASTSFKYKATLVPGRGKRGKVSKSAVEAAIRNAKGSSTEREVDLIRLIPDDSIV 315
            L SL   P+  + LL A+PV  P  A   +KY+  L PGR K+GK +K A++  I      +T RE +LIR + D   V
Sbjct:  146 LDSLTGIPRXDDLLLFAIPVCAPYAALNGYKYRVKLTPGRQKKGKAAKEALD--IFGRVNEATSREKELIRAVTDTEAV 222
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67037.16224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2REZ6_9STRA2.810e-842.50Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A5K3F203_MESCO9.890e-636.36NFACT-C domain-containing protein n=1 Tax=Mesocest... [more]
A0A0R3UJK3_MESCO1.040e-536.36Uncharacterized protein n=2 Tax=Mesocestoides cort... [more]
A0A061RK70_9CHLO9.380e-539.24Nuclear export mediator factor nemf-like n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67037contigM-pyrifera_M_contig67037:465..1040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.8
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog136037.KDR19182
Hectar predicted targeting categoryother localisation
GOsGO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015031,GO:0015833,GO:0023051,GO:0023056,GO:0033036,GO:0034613,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0080134,GO:0080135,GO:1901796,GO:1901798,GO:1902165,GO:1902167,GO:1902229,GO:1902231,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:2001020,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.Domain of unknown function (DUF3441)
EggNOG OGs38HSA@33154,3BEMP@33208,3CWJJ@33213,3SHK4@50557,41UY6@6656,COG1293@1,KOG2030@2759
COG Functional cat.K
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.678305-CDS-M-pyrifera_M_contig67037:464..7121622816560.678305-CDS-M-pyrifera_M_contig67037:464..712Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67037 465..712 -
1692278047.2339473-CDS-M-pyrifera_M_contig67037:464..7121692278047.2339473-CDS-M-pyrifera_M_contig67037:464..712Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67037 465..712 -
1622816560.692378-CDS-M-pyrifera_M_contig67037:970..10401622816560.692378-CDS-M-pyrifera_M_contig67037:970..1040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67037 971..1040 -
1692278047.2488763-CDS-M-pyrifera_M_contig67037:970..10401692278047.2488763-CDS-M-pyrifera_M_contig67037:970..1040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67037 971..1040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67037.16224.1prot_M-pyrifera_M_contig67037.16224.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67037 465..1040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67037.16224.1

>prot_M-pyrifera_M_contig67037.16224.1 ID=prot_M-pyrifera_M_contig67037.16224.1|Name=mRNA_M-pyrifera_M_contig67037.16224.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
GEVGGEVGGEEEEEEGEIVDAGLKMILASLVPDPKPTETLLSAVPVVYPT
NASTSFKYKATLVPGRGKRGKVSKSAVEAAIRNAKGSSTEREVDLIRLIP
DDSIVQ
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mRNA from alignment at M-pyrifera_M_contig67037:465..1040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67037.16224.1 ID=mRNA_M-pyrifera_M_contig67037.16224.1|Name=mRNA_M-pyrifera_M_contig67037.16224.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig67037:465..1040- (Macrocystis pyrifera P11B4 male)
GGGGAGGTGGGAGGGGAGGTGGGAGGGGAGGAGGAGGAAGAGGAAGGGGA
AATTGTGGATGCGGGTTTGAGTAGGGCGAAACTGGCGAGGATGAGAACCA
TTGCACCAACAGATCGTGATGGTGATGCTGACGGTGCTGCTGGTGGAGGT
GGAAGGGCGAGAGAAGAAGGAGAAGAAATTGAAGTGACTGAAGTTGAAGT
TGGAGGTGCAACTGTACGTGTACATCAAGAATCTGCAGTTGCAATGACTG
GTTCTGAAGCAAGAGAAGCGATAGAAGAAGAGGATCGATTGATTCGTGAA
ACGAATGAGCATGGATTCACTGGTGAAGAAATGATTCTTGCATCACTTGT
TCCTGACCCCAAACCAACAGAAACACTACTGTCTGCCGTCCCAGTGGTCT
ACCCAACCAATGCTTCGACTTCTTTCAAGTACAAAGCAACGCTTGTGCCT
GGGAGAGGAAAACGAGGAAAAGTGTCAAAATCAGCTGTGGAAGCAGCGAT
TCGAAACGCGAAAGGAAGCAGTACGGAAAGAGAAGTTGACTTGATTCGAC
TCATTCCTGATGATAGTATCGTTCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67037:465..1040-

>mRNA_M-pyrifera_M_contig67037.16224.1 ID=mRNA_M-pyrifera_M_contig67037.16224.1|Name=mRNA_M-pyrifera_M_contig67037.16224.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig67037:465..1040- (Macrocystis pyrifera P11B4 male)
GGGGAGGTGGGAGGGGAGGTGGGAGGGGAGGAGGAGGAAGAGGAAGGGGA
AATTGTGGATGCGGGTTTGAGGGGAGGTGGGAGGGGAGGTGGGAGGGGAG
GAGGAGGAAGAGGAAGGGGAAATTGTGGATGCGGGTTTGAAAATGATTCT
TGCATCACTTGTTCCTGACCCCAAACCAACAGAAACACTACTGTCTGCCG
TCCCAGTGGTCTACCCAACCAATGCTTCGACTTCTTTCAAGTACAAAGCA
ACGCTTGTGCCTGGGAGAGGAAAACGAGGAAAAGTGTCAAAATCAGCTGT
GGAAGCAGCGATTCGAAACGCGAAAGGAAGCAGTACGGAAAGAGAAGTTG
ACTTGATTCGACTCATTCCTGATGATAGTATCGTTCAAAAATGATTCTTG
CATCACTTGTTCCTGACCCCAAACCAACAGAAACACTACTGTCTGCCGTC
CCAGTGGTCTACCCAACCAATGCTTCGACTTCTTTCAAGTACAAAGCAAC
GCTTGTGCCTGGGAGAGGAAAACGAGGAAAAGTGTCAAAATCAGCTGTGG
AAGCAGCGATTCGAAACGCGAAAGGAAGCAGTACGGAAAGAGAAGTTGAC
TTGATTCGACTCATTCCTGATGATAGTATCGTTCAA
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