mRNA_M-pyrifera_M_contig67020.16220.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67020.16220.1
Unique NamemRNA_M-pyrifera_M_contig67020.16220.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67020.16220.1 vs. uniprot
Match: D7G3R6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.020e-18
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 LRQVGRTSSDVSALVQEYLRFMFLLERLEGMLTLDPSPLVDVVWRAHIGLDR 156
            L +VGR S+D+ ALV+EYLRFMFL +RLEGMLTLDPSPLVDVVW+AHI  DR
Sbjct:  205 LLEVGRHSTDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVDVVWQAHITSDR 256
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67020.16220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3R6_ECTSI2.020e-1876.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67020contigM-pyrifera_M_contig67020:939..1097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_000100.1
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.505715-CDS-M-pyrifera_M_contig67020:938..10971622816560.505715-CDS-M-pyrifera_M_contig67020:938..1097Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67020 939..1097 +
1692278047.1748183-CDS-M-pyrifera_M_contig67020:938..10971692278047.1748183-CDS-M-pyrifera_M_contig67020:938..1097Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67020 939..1097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67020.16220.1prot_M-pyrifera_M_contig67020.16220.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67020 939..1097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67020.16220.1

>prot_M-pyrifera_M_contig67020.16220.1 ID=prot_M-pyrifera_M_contig67020.16220.1|Name=mRNA_M-pyrifera_M_contig67020.16220.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
LRQVGRTSSDVSALVQEYLRFMFLLERLEGMLTLDPSPLVDVVWRAHIGL
DR*
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mRNA from alignment at M-pyrifera_M_contig67020:939..1097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67020.16220.1 ID=mRNA_M-pyrifera_M_contig67020.16220.1|Name=mRNA_M-pyrifera_M_contig67020.16220.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig67020:939..1097+ (Macrocystis pyrifera P11B4 male)
CTCCGCCAGGTTGGGCGCACATCTTCGGACGTTTCGGCGTTAGTTCAGGA
GTACCTTCGGTTCATGTTCCTTCTTGAAAGATTGGAGGGAATGCTCACGC
TGGACCCCTCCCCGCTGGTGGACGTCGTGTGGCGGGCACACATCGGGTTG
GATAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67020:939..1097+

>mRNA_M-pyrifera_M_contig67020.16220.1 ID=mRNA_M-pyrifera_M_contig67020.16220.1|Name=mRNA_M-pyrifera_M_contig67020.16220.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig67020:939..1097+ (Macrocystis pyrifera P11B4 male)
CTCCGCCAGGTTGGGCGCACATCTTCGGACGTTTCGGCGTTAGTTCAGGA
GTACCTTCGGTTCATGTTCCTTCTTGAAAGATTGGAGGGAATGCTCACGC
TGGACCCCTCCCCGCTGGTGGACGTCGTGTGGCGGGCACACATCGGGTTG
GATAGGTGACTCCGCCAGGTTGGGCGCACATCTTCGGACGTTTCGGCGTT
AGTTCAGGAGTACCTTCGGTTCATGTTCCTTCTTGAAAGATTGGAGGGAA
TGCTCACGCTGGACCCCTCCCCGCTGGTGGACGTCGTGTGGCGGGCACAC
ATCGGGTTGGATAGGTGA
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