mRNA_M-pyrifera_M_contig66999.16216.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66999.16216.1
Unique NamemRNA_M-pyrifera_M_contig66999.16216.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A4Q9LLC1_9MICR (Putative MutL-like DNA mismatch repair protein n=6 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LLC1_9MICR)

HSP 1 Score: 73.6 bits (179), Expect = 6.110e-13
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 VAKAAIRDASVIGQWDNKFILAKSFVDVAKGDRKVGGLERAAPKALSVMVFDQHGVHERIRLEHLESTSHSSPKPTHSQLAEV---ACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGR 360
            ++K  I   S+IGQ++N+FI+ K+                      S+ + DQH +HERIRLE      +     T ++L  +   ACRGA++FG  L+ +   ++L  +  CD PF CAHGR
Sbjct:  212 ISKYEISKESLIGQFNNEFIIIKNHK--------------------SLFILDQHAIHERIRLEKFIKNRNIKESITETELEILKSKACRGAIKFGDNLNDKELTKILEEIKYCDYPFICAHGR 314          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A087UE38_STEMI (DNA mismatch repair protein Mlh3 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087UE38_STEMI)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-10
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1
Query:  217 PKPTHSQLAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            PK   S L   ACRGAV+FG PLS    + LLN+LS C LPF CAHGR    P+
Sbjct:    2 PKTLSSVLNSQACRGAVKFGDPLSLSQCENLLNSLSNCKLPFQCAHGRPSIAPI 55          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: UPI000A2A8413 (DNA mismatch repair protein Mlh3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8413)

HSP 1 Score: 66.2 bits (160), Expect = 3.890e-10
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   94 DRKVGGLERAAPKALSVMVFDQHGVHERIRLEHLESTSHSSP---KPTHSQLAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            +R+V    R  P     +V +    H    +EHL+ T+   P   K     L+  AC GA++FG  LS+E  +RL++ LS+CDLPF CAHGR    PL
Sbjct:  876 EREVSETRRXRPSVAEAIVKELVESH----IEHLKQTNGVPPVIPKTXLRVLSSQACHGAIKFGDGLSKEECERLIHQLSSCDLPFQCAHGRPSIIPL 969          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A4Y2BZI7_ARAVE (DNA mismatch repair protein Mlh3 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BZI7_ARAVE)

HSP 1 Score: 63.9 bits (154), Expect = 2.570e-9
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  199 STSHSSPKPTHSQLAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            STS   PK  ++ L   ACRGAV+FG PL     + LL+ALSTC LPF CAHGR    P+
Sbjct: 1551 STSSVLPKTLNAVLNSQACRGAVKFGDPLDLSQCELLLDALSTCKLPFQCAHGRPSIAPI 1610          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: UPI0015AA5320 (DNA mismatch repair protein Mlh3-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AA5320)

HSP 1 Score: 63.2 bits (152), Expect = 4.790e-9
Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  199 STSHSSPKPTHSQLAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            S S+  PK   S L   ACRGAV+FG PLS    + LLN LS C LPF CAHGR    P+
Sbjct: 1577 SLSYIIPKTLSSVLNSQACRGAVKFGDPLSLSQCENLLNLLSNCKLPFQCAHGRPSIAPV 1636          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A653BXQ2_CALMS (WW domain-containing protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653BXQ2_CALMS)

HSP 1 Score: 63.2 bits (152), Expect = 4.810e-9
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  199 STSHSSPKPTHSQLAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            +TS S PK     ++  ACRGA++FG  LS+E    LLN LS+C+LPF CAHGR    PL
Sbjct: 1833 TTSSSLPKFLQDIISLEACRGAIKFGDTLSKEQCTDLLNMLSSCNLPFQCAHGRPTLVPL 1892          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A1Q9DM31_SYMMI (DNA mismatch repair protein MLH3 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DM31_SYMMI)

HSP 1 Score: 60.8 bits (146), Expect = 9.660e-9
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1
Query:  238 LAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            LA  ACRGA++FG PLS+   Q+L+  L +C  PF CAHGR   FPL
Sbjct:  123 LAFKACRGAIKFGDPLSQVQMQKLIRELGSCKFPFQCAHGRPTVFPL 169          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A7S2RKY4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RKY4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.120e-8
Identity = 28/58 (48.28%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  205 SHSSPKPTHSQLAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            SH+ P P    +   ACRGA++FG PLS +    L+  LS C LPF CAHGR    PL
Sbjct:  541 SHTIPPPIRRVIVSKACRGAIKFGDPLSLQECHTLIQDLSRCRLPFQCAHGRPTCVPL 598          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A482VGN3_9CUCU (DNA_mis_repair domain-containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VGN3_9CUCU)

HSP 1 Score: 61.6 bits (148), Expect = 1.610e-8
Identity = 47/124 (37.90%), Postives = 59/124 (47.58%), Query Frame = 1
Query:    7 KAAIRDASVIGQWDNKFILAKSFVDVAKGDRKVGGLERAAPKALSVMVFDQHGVHERIRLEHLESTSHSSPKPTHSQLAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            K   ++  VIGQ D+KFI                 LER   K L +++FDQH VHER+RLE               QL E    GA++FG  LS+      L  L+ C+LPF CAHGR    PL
Sbjct:  955 KEVFKNLDVIGQVDHKFIAV---------------LERT--KNL-ILLFDQHAVHERVRLE---------------QLLE----GAIKFGDSLSKTECFVHLKDLAKCNLPFQCAHGRPTLTPL 1041          
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Match: A0A7L1NFB5_RHICY (MLH3 protein (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1NFB5_RHICY)

HSP 1 Score: 59.3 bits (142), Expect = 1.760e-8
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1
Query:  238 LAEVACRGAVRFGVPLSREAQQRLLNALSTCDLPFTCAHGRTIAFPL 378
            LA  AC GAV+F  PL+ E   RL+ ALS+C LPF CAHGR    PL
Sbjct:   82 LASQACHGAVKFNEPLTLEESCRLIEALSSCQLPFQCAHGRPSMLPL 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66999.16216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Q9LLC1_9MICR6.110e-1333.33Putative MutL-like DNA mismatch repair protein n=6... [more]
A0A087UE38_STEMI1.100e-1055.56DNA mismatch repair protein Mlh3 (Fragment) n=1 Ta... [more]
UPI000A2A84133.890e-1038.78DNA mismatch repair protein Mlh3 n=1 Tax=Exaiptasi... [more]
A0A4Y2BZI7_ARAVE2.570e-953.33DNA mismatch repair protein Mlh3 n=1 Tax=Araneus v... [more]
UPI0015AA53204.790e-953.33DNA mismatch repair protein Mlh3-like n=1 Tax=Steg... [more]
A0A653BXQ2_CALMS4.810e-951.67WW domain-containing protein n=1 Tax=Callosobruchu... [more]
A0A1Q9DM31_SYMMI9.660e-955.32DNA mismatch repair protein MLH3 n=1 Tax=Symbiodin... [more]
A0A7S2RKY4_9STRA1.120e-848.28Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A482VGN3_9CUCU1.610e-837.90DNA_mis_repair domain-containing protein n=1 Tax=A... [more]
A0A7L1NFB5_RHICY1.760e-857.45MLH3 protein (Fragment) n=1 Tax=Rhinopomastus cyan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66999contigM-pyrifera_M_contig66999:1..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue8.7e-07
Seed eggNOG ortholog44689.DDB0232420
Preferred nameMLH3
KEGG koko:K08739
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005712,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:1990837
EggNOG free text desc.MutL C terminal dimerisation domain
EggNOG OGs3XFUG@554915,COG0323@1,KOG1977@2759
COG Functional cat.L
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.2710972-CDS-M-pyrifera_M_contig66999:0..3781622816560.2710972-CDS-M-pyrifera_M_contig66999:0..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66999 1..378 -
1692278047.0292737-CDS-M-pyrifera_M_contig66999:0..3781692278047.0292737-CDS-M-pyrifera_M_contig66999:0..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66999 1..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66999.16216.1prot_M-pyrifera_M_contig66999.16216.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66999 1..378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66999.16216.1

>prot_M-pyrifera_M_contig66999.16216.1 ID=prot_M-pyrifera_M_contig66999.16216.1|Name=mRNA_M-pyrifera_M_contig66999.16216.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
VAKAAIRDASVIGQWDNKFILAKSFVDVAKGDRKVGGLERAAPKALSVMV
FDQHGVHERIRLEHLESTSHSSPKPTHSQLAEVACRGAVRFGVPLSREAQ
QRLLNALSTCDLPFTCAHGRTIAFPL
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mRNA from alignment at M-pyrifera_M_contig66999:1..378-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66999.16216.1 ID=mRNA_M-pyrifera_M_contig66999.16216.1|Name=mRNA_M-pyrifera_M_contig66999.16216.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig66999:1..378- (Macrocystis pyrifera P11B4 male)
GTAGCGAAGGCAGCGATAAGGGATGCTAGTGTAATTGGGCAATGGGACAA CAAGTTTATTCTTGCGAAATCGTTTGTGGATGTTGCAAAAGGTGATAGGA AAGTTGGAGGGTTGGAGCGTGCGGCTCCCAAAGCTCTTTCTGTAATGGTG TTCGATCAACATGGAGTGCACGAAAGAATACGATTGGAGCATCTCGAATC CACCTCGCACTCCTCCCCAAAACCCACCCACAGCCAACTCGCCGAAGTTG CGTGCAGAGGAGCTGTGCGCTTTGGGGTGCCATTGTCGAGAGAAGCGCAA CAAAGGCTCCTCAACGCTCTCTCCACGTGCGACCTCCCCTTCACCTGTGC CCATGGCAGAACCATCGCATTCCCACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66999:1..378-

>mRNA_M-pyrifera_M_contig66999.16216.1 ID=mRNA_M-pyrifera_M_contig66999.16216.1|Name=mRNA_M-pyrifera_M_contig66999.16216.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig66999:1..378- (Macrocystis pyrifera P11B4 male)
GTAGCGAAGGCAGCGATAAGGGATGCTAGTGTAATTGGGCAATGGGACAA
CAAGTTTATTCTTGCGAAATCGTTTGTGGATGTTGCAAAAGGTGATAGGA
AAGTTGGAGGGTTGGAGCGTGCGGCTCCCAAAGCTCTTTCTGTAATGGTG
TTCGATCAACATGGAGTGCACGAAAGAATACGATTGGAGCATCTCGAATC
CACCTCGCACTCCTCCCCAAAACCCACCCACAGCCAACTCGCCGAAGTTG
CGTGCAGAGGAGCTGTGCGCTTTGGGGTGCCATTGTCGAGAGAAGCGCAA
CAAAGGCTCCTCAACGCTCTCTCCACGTGCGACCTCCCCTTCACCTGTGC
CCATGGCAGAACCATCGCATTCCCACTCGTAGCGAAGGCAGCGATAAGGG
ATGCTAGTGTAATTGGGCAATGGGACAACAAGTTTATTCTTGCGAAATCG
TTTGTGGATGTTGCAAAAGGTGATAGGAAAGTTGGAGGGTTGGAGCGTGC
GGCTCCCAAAGCTCTTTCTGTAATGGTGTTCGATCAACATGGAGTGCACG
AAAGAATACGATTGGAGCATCTCGAATCCACCTCGCACTCCTCCCCAAAA
CCCACCCACAGCCAACTCGCCGAAGTTGCGTGCAGAGGAGCTGTGCGCTT
TGGGGTGCCATTGTCGAGAGAAGCGCAACAAAGGCTCCTCAACGCTCTCT
CCACGTGCGACCTCCCCTTCACCTGTGCCCATGGCAGAACCATCGCATTC
CCACTC
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