mRNA_M-pyrifera_M_contig66900.16195.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66900.16195.1
Unique NamemRNA_M-pyrifera_M_contig66900.16195.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66900.16195.1 vs. uniprot
Match: L7CH99_RHOBT (Uncharacterized protein n=5 Tax=Rhodopirellula TaxID=265488 RepID=L7CH99_RHOBT)

HSP 1 Score: 595 bits (1533), Expect = 9.850e-205
Identity = 304/423 (71.87%), Postives = 347/423 (82.03%), Query Frame = 1 
Query:   10 LFGEVLQKINAWEKKGWISPATHNALHDAVYTEILLVGAPEQAGSILAKLRPPAWHPNLELPRAIRRFFSGDPADPEAHAEIDQFIESTQSNPNLSDSDRTAIKAAVNGHIAFFLGTLLNRYTEEVMRQNDEDSDELIAFQLIGERWLKRILNAVQACPQWDAPLQ-IPFDSVDPILLSPVLIGEIHETRLKARGDDADVLFSAAEFFLQRDLQRARPLVQQLIQIAPRDERTIRLAWKLGTLSFINAIQNGEMKEAEQHLELFTSNVPPDQPDGVLGLYRAIFQLAQAPDTDVKSILVENDQSDLPPFASLLLMEAIAARCGLPAKPRKNLRDARKPYSKSPSLQAVSSACQLVGTMLANERLDFPGRAGMKTELITATKRASKHAGTRTYNIETANTIGVFVVLAQDDVLRRQFLRATRDH 1275
            LF EVL KIN WEK+GWISPAT NALHDA+YT++L+   P+QAG+I AKLRPPAW P L LP+AI +FFSGDPADP AHA+ID+F+ESTQSNP+LSDSDRTAIKA VN  IAFFLGTL+ R+ +E++   + DSD L   Q+IG+++L+R+LNAVQACP WDAPLQ  PF  +DPILL   LI EIHETRLKARGDD  VLFSAAE ++Q DLQR RPLVQQLIQIAPRD+RTIRLAW L TLSFI AIQNG   EAEQHLEL +SNVP DQPDG+L LYRAI QLAQ PDTD++S LV+ND+  +P FASLLL+EAI+ARCGLPAK RK LRDARKP SKSPSLQAVSSAC   G ML NE+LDFPGRAGMK ELIT  KRA   +    Y+IETANTIGVFVVLAQDDVL R+FL+AT  H
Sbjct:  275 LFHEVLLKINTWEKEGWISPATRNALHDAIYTQLLITRTPDQAGAIYAKLRPPAWDPKLALPKAIGQFFSGDPADPHAHAQIDRFVESTQSNPHLSDSDRTAIKAVVNASIAFFLGTLVKRFNDELLPDAEGDSDSLKTIQVIGKQYLERMLNAVQACPHWDAPLQHAPFAGIDPILLPQELICEIHETRLKARGDDLGVLFSAAESYIQTDLQRTRPLVQQLIQIAPRDQRTIRLAWNLSTLSFIAAIQNGNTDEAEQHLELLSSNVPSDQPDGLLELYRAICQLAQDPDTDLESCLVKNDELKVPRFASLLLLEAISARCGLPAKTRKKLRDARKPLSKSPSLQAVSSACDKAGRMLVNEKLDFPGRAGMKKELITVAKRALTQSKIEAYDIETANTIGVFVVLAQDDVLCRRFLQATPRH 697
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66900.16195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
L7CH99_RHOBT9.850e-20571.87Uncharacterized protein n=5 Tax=Rhodopirellula Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66900contigM-pyrifera_M_contig66900:3..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1275
Cds size1275
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.3464134-CDS-M-pyrifera_M_contig66900:2..12771622816559.3464134-CDS-M-pyrifera_M_contig66900:2..1277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66900 3..1277 +
1692278046.5267959-CDS-M-pyrifera_M_contig66900:2..12771692278046.5267959-CDS-M-pyrifera_M_contig66900:2..1277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66900 3..1277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66900.16195.1prot_M-pyrifera_M_contig66900.16195.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66900 3..1277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66900.16195.1

>prot_M-pyrifera_M_contig66900.16195.1 ID=prot_M-pyrifera_M_contig66900.16195.1|Name=mRNA_M-pyrifera_M_contig66900.16195.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=425bp
DGPLFGEVLQKINAWEKKGWISPATHNALHDAVYTEILLVGAPEQAGSIL
AKLRPPAWHPNLELPRAIRRFFSGDPADPEAHAEIDQFIESTQSNPNLSD
SDRTAIKAAVNGHIAFFLGTLLNRYTEEVMRQNDEDSDELIAFQLIGERW
LKRILNAVQACPQWDAPLQIPFDSVDPILLSPVLIGEIHETRLKARGDDA
DVLFSAAEFFLQRDLQRARPLVQQLIQIAPRDERTIRLAWKLGTLSFINA
IQNGEMKEAEQHLELFTSNVPPDQPDGVLGLYRAIFQLAQAPDTDVKSIL
VENDQSDLPPFASLLLMEAIAARCGLPAKPRKNLRDARKPYSKSPSLQAV
SSACQLVGTMLANERLDFPGRAGMKTELITATKRASKHAGTRTYNIETAN
TIGVFVVLAQDDVLRRQFLRATRDH
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mRNA from alignment at M-pyrifera_M_contig66900:3..1277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66900.16195.1 ID=mRNA_M-pyrifera_M_contig66900.16195.1|Name=mRNA_M-pyrifera_M_contig66900.16195.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at M-pyrifera_M_contig66900:3..1277+ (Macrocystis pyrifera P11B4 male)
GATGGACCACTATTCGGCGAAGTCCTGCAAAAGATCAATGCATGGGAGAA
GAAGGGCTGGATCTCACCGGCGACTCACAATGCTCTGCACGACGCCGTCT
ACACGGAAATCTTGTTGGTGGGTGCTCCCGAACAAGCAGGTTCGATCCTG
GCTAAACTTCGTCCACCGGCATGGCACCCCAACCTGGAATTGCCCCGGGC
AATCAGACGATTCTTTTCTGGCGATCCCGCCGACCCCGAAGCTCATGCCG
AGATTGATCAATTCATTGAGTCGACTCAAAGCAACCCCAACCTTTCGGAT
TCCGATCGGACCGCCATCAAAGCTGCGGTGAACGGCCACATCGCCTTCTT
CCTCGGCACGTTGCTGAACCGCTACACAGAGGAAGTCATGCGGCAGAACG
ACGAGGACTCGGATGAGCTGATAGCGTTCCAACTCATTGGAGAACGATGG
CTGAAACGGATTTTGAATGCCGTCCAGGCGTGCCCGCAGTGGGACGCGCC
GCTTCAGATCCCCTTTGACTCCGTTGATCCGATTCTGCTTTCCCCTGTCT
TGATCGGCGAGATACACGAAACCCGTTTGAAGGCTCGGGGAGACGATGCT
GACGTCCTCTTTTCTGCAGCCGAATTCTTTCTGCAAAGGGACCTGCAGCG
TGCTCGTCCCCTGGTGCAGCAGTTGATTCAGATCGCGCCGCGTGACGAGC
GCACGATCCGTCTTGCATGGAAACTCGGCACACTCTCCTTCATCAATGCG
ATCCAAAACGGAGAGATGAAAGAGGCTGAGCAGCACCTCGAGTTGTTCAC
CTCAAATGTGCCTCCTGATCAGCCAGACGGTGTGCTGGGACTGTACCGTG
CCATCTTCCAGTTGGCGCAAGCCCCCGACACCGATGTCAAATCCATTCTC
GTCGAGAACGATCAGTCGGACCTTCCACCCTTTGCATCCTTGCTTCTGAT
GGAAGCGATCGCCGCAAGGTGTGGGTTGCCTGCCAAACCCCGCAAAAACC
TTCGCGACGCGCGCAAGCCGTATTCAAAATCGCCTTCGCTGCAAGCGGTT
TCATCCGCCTGTCAGTTGGTGGGGACGATGTTGGCGAACGAAAGACTCGA
CTTTCCTGGCCGTGCTGGCATGAAGACAGAATTGATCACGGCGACAAAAC
GAGCGTCGAAGCATGCGGGCACTCGTACGTACAACATCGAAACCGCGAAC
ACCATTGGCGTCTTTGTTGTCCTTGCCCAAGACGACGTCCTGCGCCGTCA
ATTTCTACGAGCCACCCGCGATCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66900:3..1277+

>mRNA_M-pyrifera_M_contig66900.16195.1 ID=mRNA_M-pyrifera_M_contig66900.16195.1|Name=mRNA_M-pyrifera_M_contig66900.16195.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2550bp|location=Sequence derived from alignment at M-pyrifera_M_contig66900:3..1277+ (Macrocystis pyrifera P11B4 male)
GATGGACCACTATTCGGCGAAGTCCTGCAAAAGATCAATGCATGGGAGAA
GAAGGGCTGGATCTCACCGGCGACTCACAATGCTCTGCACGACGCCGTCT
ACACGGAAATCTTGTTGGTGGGTGCTCCCGAACAAGCAGGTTCGATCCTG
GCTAAACTTCGTCCACCGGCATGGCACCCCAACCTGGAATTGCCCCGGGC
AATCAGACGATTCTTTTCTGGCGATCCCGCCGACCCCGAAGCTCATGCCG
AGATTGATCAATTCATTGAGTCGACTCAAAGCAACCCCAACCTTTCGGAT
TCCGATCGGACCGCCATCAAAGCTGCGGTGAACGGCCACATCGCCTTCTT
CCTCGGCACGTTGCTGAACCGCTACACAGAGGAAGTCATGCGGCAGAACG
ACGAGGACTCGGATGAGCTGATAGCGTTCCAACTCATTGGAGAACGATGG
CTGAAACGGATTTTGAATGCCGTCCAGGCGTGCCCGCAGTGGGACGCGCC
GCTTCAGATCCCCTTTGACTCCGTTGATCCGATTCTGCTTTCCCCTGTCT
TGATCGGCGAGATACACGAAACCCGTTTGAAGGCTCGGGGAGACGATGCT
GACGTCCTCTTTTCTGCAGCCGAATTCTTTCTGCAAAGGGACCTGCAGCG
TGCTCGTCCCCTGGTGCAGCAGTTGATTCAGATCGCGCCGCGTGACGAGC
GCACGATCCGTCTTGCATGGAAACTCGGCACACTCTCCTTCATCAATGCG
ATCCAAAACGGAGAGATGAAAGAGGCTGAGCAGCACCTCGAGTTGTTCAC
CTCAAATGTGCCTCCTGATCAGCCAGACGGTGTGCTGGGACTGTACCGTG
CCATCTTCCAGTTGGCGCAAGCCCCCGACACCGATGTCAAATCCATTCTC
GTCGAGAACGATCAGTCGGACCTTCCACCCTTTGCATCCTTGCTTCTGAT
GGAAGCGATCGCCGCAAGGTGTGGGTTGCCTGCCAAACCCCGCAAAAACC
TTCGCGACGCGCGCAAGCCGTATTCAAAATCGCCTTCGCTGCAAGCGGTT
TCATCCGCCTGTCAGTTGGTGGGGACGATGTTGGCGAACGAAAGACTCGA
CTTTCCTGGCCGTGCTGGCATGAAGACAGAATTGATCACGGCGACAAAAC
GAGCGTCGAAGCATGCGGGCACTCGTACGTACAACATCGAAACCGCGAAC
ACCATTGGCGTCTTTGTTGTCCTTGCCCAAGACGACGTCCTGCGCCGTCA
ATTTCTACGAGCCACCCGCGATCACGATGGACCACTATTCGGCGAAGTCC
TGCAAAAGATCAATGCATGGGAGAAGAAGGGCTGGATCTCACCGGCGACT
CACAATGCTCTGCACGACGCCGTCTACACGGAAATCTTGTTGGTGGGTGC
TCCCGAACAAGCAGGTTCGATCCTGGCTAAACTTCGTCCACCGGCATGGC
ACCCCAACCTGGAATTGCCCCGGGCAATCAGACGATTCTTTTCTGGCGAT
CCCGCCGACCCCGAAGCTCATGCCGAGATTGATCAATTCATTGAGTCGAC
TCAAAGCAACCCCAACCTTTCGGATTCCGATCGGACCGCCATCAAAGCTG
CGGTGAACGGCCACATCGCCTTCTTCCTCGGCACGTTGCTGAACCGCTAC
ACAGAGGAAGTCATGCGGCAGAACGACGAGGACTCGGATGAGCTGATAGC
GTTCCAACTCATTGGAGAACGATGGCTGAAACGGATTTTGAATGCCGTCC
AGGCGTGCCCGCAGTGGGACGCGCCGCTTCAGATCCCCTTTGACTCCGTT
GATCCGATTCTGCTTTCCCCTGTCTTGATCGGCGAGATACACGAAACCCG
TTTGAAGGCTCGGGGAGACGATGCTGACGTCCTCTTTTCTGCAGCCGAAT
TCTTTCTGCAAAGGGACCTGCAGCGTGCTCGTCCCCTGGTGCAGCAGTTG
ATTCAGATCGCGCCGCGTGACGAGCGCACGATCCGTCTTGCATGGAAACT
CGGCACACTCTCCTTCATCAATGCGATCCAAAACGGAGAGATGAAAGAGG
CTGAGCAGCACCTCGAGTTGTTCACCTCAAATGTGCCTCCTGATCAGCCA
GACGGTGTGCTGGGACTGTACCGTGCCATCTTCCAGTTGGCGCAAGCCCC
CGACACCGATGTCAAATCCATTCTCGTCGAGAACGATCAGTCGGACCTTC
CACCCTTTGCATCCTTGCTTCTGATGGAAGCGATCGCCGCAAGGTGTGGG
TTGCCTGCCAAACCCCGCAAAAACCTTCGCGACGCGCGCAAGCCGTATTC
AAAATCGCCTTCGCTGCAAGCGGTTTCATCCGCCTGTCAGTTGGTGGGGA
CGATGTTGGCGAACGAAAGACTCGACTTTCCTGGCCGTGCTGGCATGAAG
ACAGAATTGATCACGGCGACAAAACGAGCGTCGAAGCATGCGGGCACTCG
TACGTACAACATCGAAACCGCGAACACCATTGGCGTCTTTGTTGTCCTTG
CCCAAGACGACGTCCTGCGCCGTCAATTTCTACGAGCCACCCGCGATCAC
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