mRNA_M-pyrifera_M_contig66816.16180.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66816.16180.1
Unique NamemRNA_M-pyrifera_M_contig66816.16180.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: D8LQK8_ECTSI (Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQK8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.200e-38
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAKGIE 234
            SRK++ELK FP+AAITFWWGALHRSVRFEG+VA VSEEESD YF+CRPTGSKIGAWVSDQSEP+ SREE+  KAK +E
Sbjct:  109 SRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMVSEEESDTYFNCRPTGSKIGAWVSDQSEPIASREEMTLKAKEVE 186          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: A0A836CLR6_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.240e-27
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAKGIE 234
            SRKA+EL+  P+AA TFWW  LHRSVR EG VARVS  ESD Y++ RP GS++GAWVSDQS+PV  R+ +DAK + +E
Sbjct:   91 SRKARELEANPFAAATFWWAPLHRSVRVEGAVARVSAAESDTYYASRPRGSRLGAWVSDQSQPVAGRDAMDAKQQEVE 168          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: A0A7R9YBU3_9STRA (Pyridoxal 5'-phosphate synthase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBU3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.480e-24
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAK 219
            SRKA+EL   P+AA+TFWWG L RSVR EG+V R+S+EES+ YF  RP GS+IGA VS+QS P+ +R+ LDA+
Sbjct:   48 SRKAQELDANPFAALTFWWGDLERSVRIEGRVQRISKEESEAYFRSRPRGSQIGALVSEQSRPIENRQALDAR 120          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: A0A7S2XW57_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW57_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.720e-24
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAK 219
            SRK +EL   P+A++ FWWG LHRSVR EGKV +VS EESDEYF  RP GS++GA VS QS PV SR EL+AK
Sbjct:  153 SRKGQELSANPWASLVFWWGDLHRSVRIEGKVEKVSAEESDEYFYSRPVGSQLGAMVSTQSRPVQSRSELEAK 225          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: R7QMD8_CHOCR (Pyridoxal 5'-phosphate synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMD8_CHOCR)

HSP 1 Score: 98.2 bits (243), Expect = 3.280e-23
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAKGI 231
            SRKA +L + P+AA+TFWW +L RSVR EGKV RV  EESD YF  RP  S++GAW SDQS+PVG R  ++ +  G+
Sbjct:  126 SRKAAQLADNPFAALTFWWPSLERSVRIEGKVDRVPTEESDAYFKSRPPASRLGAWASDQSKPVGERHVVEERWNGL 202          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: UPI0003FCEA0A (pyridoxamine 5'-phosphate oxidase n=1 Tax=Flectobacillus major TaxID=103 RepID=UPI0003FCEA0A)

HSP 1 Score: 95.9 bits (237), Expect = 7.580e-23
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAKGI 231
            SRK  EL E P+A ITF+WG L R VR EG + +VSE++SDEYFS RP GS+IGAWVS+QS  + +RE L+ + K I
Sbjct:   83 SRKGTELAENPHACITFFWGELERQVRIEGLIEKVSEQDSDEYFSVRPRGSQIGAWVSNQSMVIDNREVLEEREKSI 159          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: A0A0G4EI35_VITBC (Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EI35_VITBC)

HSP 1 Score: 97.1 bits (240), Expect = 8.160e-23
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAKGIE 234
            SRK KEL E P+A++TFWW AL RS+R EG+V +V  EESD YF+ RP  S++GA  SDQS P+ SRE L+AK   +E
Sbjct:  132 SRKGKELTENPFASLTFWWEALERSIRIEGRVQQVPPEESDAYFTSRPKASRLGAIASDQSRPIASREALEAKWSELE 209          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: A0A6P0M6S8_9CYAN (Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 Tax=Moorena sp. SIO3G5 TaxID=2607837 RepID=A0A6P0M6S8_9CYAN)

HSP 1 Score: 92.4 bits (228), Expect = 3.510e-22
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAKGIE 234
            S KA++L E P+AAITFWW  L R VR EG+V +++  ESD YF+ RP GS++GAWVSDQS+ + SRE L+ + + +E
Sbjct:   17 SNKAQQLIENPWAAITFWWAELERQVRIEGRVDKLTAAESDGYFNSRPKGSQLGAWVSDQSQVIPSREVLEQRLQQLE 94          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: A0A353SSI7_9DELT (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A353SSI7_9DELT)

HSP 1 Score: 93.6 bits (231), Expect = 3.660e-22
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAKGIE 234
            SRK +EL     AA+ FWW  L+R +R EG V + S EESD YFS RP GSK+GAW SDQS P+ SRE L+A+ + +E
Sbjct:   62 SRKGRELPGCRRAALLFWWETLNRQIRIEGVVGKTSPEESDTYFSQRPLGSKLGAWASDQSRPLSSREALEARVREVE 139          
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Match: A0A8H9II78_9BURK (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Alcaligenes pakistanensis TaxID=1482717 RepID=A0A8H9II78_9BURK)

HSP 1 Score: 93.6 bits (231), Expect = 5.360e-22
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTGSKIGAWVSDQSEPVGSREELDAKAK 225
            SRK ++L + P+A+++F+W ++ R VRFEG+++RVS  ESDEYF  RP GS+IGAWVS QS+P+ SR ELDA+ +
Sbjct:   80 SRKGQDLDQNPWASLSFFWPSMERQVRFEGRISRVSAAESDEYFHSRPLGSRIGAWVSPQSQPI-SRAELDARTQ 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66816.16180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQK8_ECTSI1.200e-3880.77Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus... [more]
A0A836CLR6_9STRA1.240e-2762.82Pyridoxal 5'-phosphate synthase n=1 Tax=Tribonema ... [more]
A0A7R9YBU3_9STRA1.480e-2461.64Pyridoxal 5'-phosphate synthase (Fragment) n=1 Tax... [more]
A0A7S2XW57_9STRA2.720e-2465.75Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa... [more]
R7QMD8_CHOCR3.280e-2357.14Pyridoxal 5'-phosphate synthase n=1 Tax=Chondrus c... [more]
UPI0003FCEA0A7.580e-2358.44pyridoxamine 5'-phosphate oxidase n=1 Tax=Flectoba... [more]
A0A0G4EI35_VITBC8.160e-2357.69Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella b... [more]
A0A6P0M6S8_9CYAN3.510e-2253.85Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 T... [more]
A0A353SSI7_9DELT3.660e-2255.13Pyridoxine/pyridoxamine 5'-phosphate oxidase n=2 T... [more]
A0A8H9II78_9BURK5.360e-2256.00Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66816contigM-pyrifera_M_contig66816:2..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D8LQK8
Preferred namePDX3
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009987,GO:0010181,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032553,GO:0034641,GO:0036094,GO:0042364,GO:0042816,GO:0042818,GO:0042819,GO:0042822,GO:0042823,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.pyridoxamine-phosphate oxidase activity
EggNOG OGsCOG0259@1,KOG2586@2759
EC1.4.3.5
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.4684274-CDS-M-pyrifera_M_contig66816:1..791622816558.4684274-CDS-M-pyrifera_M_contig66816:1..79Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66816 2..79 -
1692278045.9959562-CDS-M-pyrifera_M_contig66816:1..791692278045.9959562-CDS-M-pyrifera_M_contig66816:1..79Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66816 2..79 -
1622816558.4826891-CDS-M-pyrifera_M_contig66816:1004..11601622816558.4826891-CDS-M-pyrifera_M_contig66816:1004..1160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66816 1005..1160 -
1692278046.0094795-CDS-M-pyrifera_M_contig66816:1004..11601692278046.0094795-CDS-M-pyrifera_M_contig66816:1004..1160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66816 1005..1160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66816.16180.1prot_M-pyrifera_M_contig66816.16180.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66816 2..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66816.16180.1

>prot_M-pyrifera_M_contig66816.16180.1 ID=prot_M-pyrifera_M_contig66816.16180.1|Name=mRNA_M-pyrifera_M_contig66816.16180.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
SRKAKELKEFPYAAITFWWGALHRSVRFEGKVARVSEEESDEYFSCRPTG
SKIGAWVSDQSEPVGSREELDAKAKGIE
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mRNA from alignment at M-pyrifera_M_contig66816:2..1160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66816.16180.1 ID=mRNA_M-pyrifera_M_contig66816.16180.1|Name=mRNA_M-pyrifera_M_contig66816.16180.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1159bp|location=Sequence derived from alignment at M-pyrifera_M_contig66816:2..1160- (Macrocystis pyrifera P11B4 male)
AGTCGCAAGGCGAAGGAACTCAAGGAGTTCCCGTACGCGGCGATAACTTT CTGGTGGGGGGCTCTGCACCGCTCTGTGCGGTTCGAGGGGAAGGTGGCGA GGGTCAGCGAGGAGGAGAGCGACGAGTACTTCAGCTGCCGTCCAACTGGG AGCAAGGTAGGATGCGTTCTGGTATTTTTACCATTTAAATGTATTATGTT GGGTTTACAAACTACGTAGTAGCAAATATTTTCTTGTATTTTTTTACCAT TGATCTATTATATTGGATATTGGATTTGGACTACTAATAGTATCAAGGCG TTCTTCTGAGGTCCTCGCCAGTACCACCCCTAACGCAGGGCTTACTGCTG TACATGTATCAGAGCGTGGGCAAGTACTTCGGCTGGAAGACCGCTGGGCT CAAATATGCTGTCAATGACACTGGCCGGTAATATTATCACCGTTTGATAT TGAATACTGACACCAAACGGGTATTGTATTTCCGGCAACAGTGGTATAAG AAGACCGGTACTTTTGAGGGCGTCAGAACCGGTATATGGGCTTAGTACTA GTTTCAATGTAGGGGCAACCAGTCAAGGGCTCAAATCGCGGTTTCCTGTA TACCAGATAGCATATCTAACTAGACTACATATTATAGTGGGTTTACAGTA ATAGCGAGGCGTTTATCCGAGGGCCGCGCCAGTTCCACCGCGTTCGCAAG CTCTGCATGTATGTAACCACGGATGAAAGCGCTTGAGGAAGGGATATGTA CGGTGCAGCCTTTATATCCCCAAGGTTGCTGCAGATAGTGCAGATATGTT GAATGACCTCACGATATTGTTTGCCATTGGGACGGACGTCAAGCGGTAAT TTGTTTGAAAATACAGCAATGAGATCCAGACTGGAAAACTCTTCTTTGCA AGATGCGTGCTCGCGTATGAAGTCCGTCGCGCGTTGCGTAGGGGTATGGC CTCGCGCGAAGCTTGTAGGTCGGGGTTCGCCACCGTGGGTGGTAGCACCA GGCTCTACAGGACCATCATACAGTATATACACGACACATTTTATACCTGT TCTTCCCTCGCCCATCCGTGCGTTTGCGCAGATCGGGGCCTGGGTGTCAG ACCAAAGCGAGCCGGTGGGATCGCGCGAAGAACTTGACGCAAAGGCGAAG GGGATAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66816:2..1160-

>mRNA_M-pyrifera_M_contig66816.16180.1 ID=mRNA_M-pyrifera_M_contig66816.16180.1|Name=mRNA_M-pyrifera_M_contig66816.16180.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig66816:2..1160- (Macrocystis pyrifera P11B4 male)
AGTCGCAAGGCGAAGGAACTCAAGGAGTTCCCGTACGCGGCGATAACTTT
CTGGTGGGGGGCTCTGCACCGCTCTGTGCGGTTCGAGGGGAAGGTGGCGA
GGGTCAGCGAGGAGGAGAGCGACGAGTACTTCAGCTGCCGTCCAACTGGG
AGCAAGAGTCGCAAGGCGAAGGAACTCAAGGAGTTCCCGTACGCGGCGAT
AACTTTCTGGTGGGGGGCTCTGCACCGCTCTGTGCGGTTCGAGGGGAAGG
TGGCGAGGGTCAGCGAGGAGGAGAGCGACGAGTACTTCAGCTGCCGTCCA
ACTGGGAGCAAGATCGGGGCCTGGGTGTCAGACCAAAGCGAGCCGGTGGG
ATCGCGCGAAGAACTTGACGCAAAGGCGAAGGGGATAGAGATCGGGGCCT
GGGTGTCAGACCAAAGCGAGCCGGTGGGATCGCGCGAAGAACTTGACGCA
AAGGCGAAGGGGATAGAG
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