mRNA_M-pyrifera_M_contig66761.16171.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66761.16171.1
Unique NamemRNA_M-pyrifera_M_contig66761.16171.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66761.16171.1 vs. uniprot
Match: K4L2M6_SIMAS (Uncharacterized protein n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) TaxID=1117647 RepID=K4L2M6_SIMAS)

HSP 1 Score: 57.8 bits (138), Expect = 3.450e-6
Identity = 63/225 (28.00%), Postives = 104/225 (46.22%), Query Frame = 1 
Query:    1 YSLLTVHNYVLNLNTLSPYQP-SQFLPVTLSIPSVALQNAKANLRQILPDKKVKLAITEHNAIFYPDVWGNTSGPAAEFMRASANSGVHAVHVAASLLTMATDPSTFGMANYHSLFQNCGTLPTCNPLLSQPGFGIMSMYFTAKNNTVGFSAVAQLFTHLTTSATSHTSTLSLLPPPTPLLNISILG-TNPSPIQGAIFFNTTPCTFHFWALNRGLTPLTILLPT 669
            +  L +H+YV+    L PY   ++     L+ P+  L  A   ++Q   D    + ITE+N I Y   +  T GP+AE+M A+ ++G ++++ A+ LL    +P    + N+HS+    G L          G+G+  +    ++ T+  + + QL+ HLT+ A        L     PLL I+I G      + GA            W +NR   PLTI LP+
Sbjct:  250 FDALILHHYVMKRQKLDPYTTDAERAKAFLAYPTATLDRAAKLIKQRFGD--YPMWITEYNVIAYYKQFHGT-GPSAEWMLATRDTGWNSLYQASFLLNGMNNPDAIEILNHHSI----GNL--------DHGWGL-GLPIDTRSGTL--TKMGQLYAHLTSIALRQEQMHPLDFSNNPLLGITIEGDAQQRALYGAALSGNDGLAL--WIINRSGHPLTIALPS 454
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66761.16171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K4L2M6_SIMAS3.450e-628.00Uncharacterized protein n=1 Tax=Simiduia agarivora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66761contigM-pyrifera_M_contig66761:120..788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.5e-06
Seed eggNOG ortholog1117647.M5M_16610
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alpha-L-arabinofuranosidase
EggNOG OGs1NRQB@1224,1SJPU@1236,COG3534@1,COG3534@2
COG Functional cat.G
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size669
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.0003333-CDS-M-pyrifera_M_contig66761:119..7881622816558.0003333-CDS-M-pyrifera_M_contig66761:119..788Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66761 120..788 +
1692278045.8004303-CDS-M-pyrifera_M_contig66761:119..7881692278045.8004303-CDS-M-pyrifera_M_contig66761:119..788Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66761 120..788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66761.16171.1prot_M-pyrifera_M_contig66761.16171.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66761 120..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66761.16171.1

>prot_M-pyrifera_M_contig66761.16171.1 ID=prot_M-pyrifera_M_contig66761.16171.1|Name=mRNA_M-pyrifera_M_contig66761.16171.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=223bp
YSLLTVHNYVLNLNTLSPYQPSQFLPVTLSIPSVALQNAKANLRQILPDK
KVKLAITEHNAIFYPDVWGNTSGPAAEFMRASANSGVHAVHVAASLLTMA
TDPSTFGMANYHSLFQNCGTLPTCNPLLSQPGFGIMSMYFTAKNNTVGFS
AVAQLFTHLTTSATSHTSTLSLLPPPTPLLNISILGTNPSPIQGAIFFNT
TPCTFHFWALNRGLTPLTILLPT
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mRNA from alignment at M-pyrifera_M_contig66761:120..788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66761.16171.1 ID=mRNA_M-pyrifera_M_contig66761.16171.1|Name=mRNA_M-pyrifera_M_contig66761.16171.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=669bp|location=Sequence derived from alignment at M-pyrifera_M_contig66761:120..788+ (Macrocystis pyrifera P11B4 male)
TATTCACTCCTCACAGTCCACAACTACGTCCTCAACCTTAATACTCTCTC
CCCCTACCAACCCTCTCAATTTCTCCCCGTCACCCTCTCTATTCCAAGTG
TTGCTCTTCAAAATGCCAAGGCAAACTTGCGTCAGATCCTCCCTGACAAA
AAAGTCAAGCTTGCAATCACAGAACACAATGCCATCTTCTATCCTGATGT
GTGGGGAAATACATCAGGACCTGCAGCTGAGTTCATGAGAGCGTCCGCAA
ATTCTGGTGTGCACGCGGTACACGTAGCTGCTTCCCTCCTCACCATGGCT
ACTGATCCATCCACCTTTGGCATGGCAAATTATCACTCCTTGTTTCAAAA
TTGTGGCACACTCCCAACATGCAACCCTCTCCTCTCCCAGCCTGGTTTCG
GAATCATGTCGATGTATTTCACGGCCAAGAACAACACAGTTGGATTCAGC
GCTGTGGCACAACTCTTTACTCATCTCACAACATCTGCTACATCCCACAC
ATCAACCCTCTCCCTCCTCCCACCACCAACACCTCTCCTCAATATTTCCA
TCCTTGGAACCAATCCATCTCCAATCCAAGGAGCCATATTCTTCAACACA
ACCCCATGTACATTCCACTTTTGGGCTCTCAATCGTGGTCTCACCCCACT
CACAATCCTTCTACCCACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66761:120..788+

>mRNA_M-pyrifera_M_contig66761.16171.1 ID=mRNA_M-pyrifera_M_contig66761.16171.1|Name=mRNA_M-pyrifera_M_contig66761.16171.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1338bp|location=Sequence derived from alignment at M-pyrifera_M_contig66761:120..788+ (Macrocystis pyrifera P11B4 male)
TATTCACTCCTCACAGTCCACAACTACGTCCTCAACCTTAATACTCTCTC
CCCCTACCAACCCTCTCAATTTCTCCCCGTCACCCTCTCTATTCCAAGTG
TTGCTCTTCAAAATGCCAAGGCAAACTTGCGTCAGATCCTCCCTGACAAA
AAAGTCAAGCTTGCAATCACAGAACACAATGCCATCTTCTATCCTGATGT
GTGGGGAAATACATCAGGACCTGCAGCTGAGTTCATGAGAGCGTCCGCAA
ATTCTGGTGTGCACGCGGTACACGTAGCTGCTTCCCTCCTCACCATGGCT
ACTGATCCATCCACCTTTGGCATGGCAAATTATCACTCCTTGTTTCAAAA
TTGTGGCACACTCCCAACATGCAACCCTCTCCTCTCCCAGCCTGGTTTCG
GAATCATGTCGATGTATTTCACGGCCAAGAACAACACAGTTGGATTCAGC
GCTGTGGCACAACTCTTTACTCATCTCACAACATCTGCTACATCCCACAC
ATCAACCCTCTCCCTCCTCCCACCACCAACACCTCTCCTCAATATTTCCA
TCCTTGGAACCAATCCATCTCCAATCCAAGGAGCCATATTCTTCAACACA
ACCCCATGTACATTCCACTTTTGGGCTCTCAATCGTGGTCTCACCCCACT
CACAATCCTTCTACCCACATATTCACTCCTCACAGTCCACAACTACGTCC
TCAACCTTAATACTCTCTCCCCCTACCAACCCTCTCAATTTCTCCCCGTC
ACCCTCTCTATTCCAAGTGTTGCTCTTCAAAATGCCAAGGCAAACTTGCG
TCAGATCCTCCCTGACAAAAAAGTCAAGCTTGCAATCACAGAACACAATG
CCATCTTCTATCCTGATGTGTGGGGAAATACATCAGGACCTGCAGCTGAG
TTCATGAGAGCGTCCGCAAATTCTGGTGTGCACGCGGTACACGTAGCTGC
TTCCCTCCTCACCATGGCTACTGATCCATCCACCTTTGGCATGGCAAATT
ATCACTCCTTGTTTCAAAATTGTGGCACACTCCCAACATGCAACCCTCTC
CTCTCCCAGCCTGGTTTCGGAATCATGTCGATGTATTTCACGGCCAAGAA
CAACACAGTTGGATTCAGCGCTGTGGCACAACTCTTTACTCATCTCACAA
CATCTGCTACATCCCACACATCAACCCTCTCCCTCCTCCCACCACCAACA
CCTCTCCTCAATATTTCCATCCTTGGAACCAATCCATCTCCAATCCAAGG
AGCCATATTCTTCAACACAACCCCATGTACATTCCACTTTTGGGCTCTCA
ATCGTGGTCTCACCCCACTCACAATCCTTCTACCCACA
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