mRNA_M-pyrifera_M_contig66759.16169.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66759.16169.1
Unique NamemRNA_M-pyrifera_M_contig66759.16169.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66759.16169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66759contigM-pyrifera_M_contig66759:563..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size723
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.9145887-CDS-M-pyrifera_M_contig66759:562..12851622816557.9145887-CDS-M-pyrifera_M_contig66759:562..1285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66759 563..1285 +
1692278045.7634985-CDS-M-pyrifera_M_contig66759:562..12851692278045.7634985-CDS-M-pyrifera_M_contig66759:562..1285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66759 563..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66759.16169.1prot_M-pyrifera_M_contig66759.16169.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66759 563..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66759.16169.1

>prot_M-pyrifera_M_contig66759.16169.1 ID=prot_M-pyrifera_M_contig66759.16169.1|Name=mRNA_M-pyrifera_M_contig66759.16169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=241bp
MSAQLDPEEVQAIADAMAEDVGVSTPPVNERDFRIPRRLSLEVVKRLGDT
LRNLVPALKRQFQALVPVTIELEPLGVREITARGLFEDLELPFIVGRFTT
RGAPGWVVWEPAQAIGCVQSALGMPEPDLDLIDVNHELSFVERRLMGRIL
EELLAPLAARFHFDVDDLFIAEKLDDVGSWEDEGAEADAHRLCIELGLTA
LGQTHTMTLYLPGFLPAEVEEHEEREDARAPAVLRTIPVDV
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mRNA from alignment at M-pyrifera_M_contig66759:563..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66759.16169.1 ID=mRNA_M-pyrifera_M_contig66759.16169.1|Name=mRNA_M-pyrifera_M_contig66759.16169.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=723bp|location=Sequence derived from alignment at M-pyrifera_M_contig66759:563..1285+ (Macrocystis pyrifera P11B4 male)
ATGTCCGCCCAGCTCGATCCGGAAGAGGTCCAGGCCATCGCCGACGCGAT
GGCCGAGGACGTCGGCGTGTCGACGCCGCCGGTCAACGAGCGCGACTTCC
GCATCCCGCGGCGGCTCAGCCTGGAGGTCGTCAAGCGCCTCGGCGACACG
CTGCGCAACCTGGTCCCGGCGCTCAAGCGCCAGTTCCAGGCGCTGGTGCC
GGTCACGATCGAGCTCGAGCCCCTGGGCGTGCGCGAGATCACCGCGCGCG
GGCTGTTCGAGGACCTCGAGCTGCCGTTCATCGTCGGCCGCTTCACGACC
CGCGGTGCGCCCGGCTGGGTCGTGTGGGAGCCGGCCCAGGCGATCGGCTG
CGTGCAGTCGGCGCTCGGCATGCCCGAACCCGACCTCGATCTGATCGACG
TCAACCACGAGCTGTCCTTCGTCGAGCGGCGCCTGATGGGCCGCATCCTC
GAGGAGCTGCTCGCGCCGCTGGCCGCGCGCTTCCACTTCGACGTCGACGA
CCTGTTCATCGCCGAGAAGCTCGACGACGTCGGCTCCTGGGAGGACGAAG
GCGCCGAGGCCGACGCGCACCGGTTGTGCATCGAGCTCGGACTGACCGCG
CTCGGCCAGACCCACACGATGACGCTGTACCTGCCGGGCTTCCTGCCCGC
CGAGGTCGAGGAGCACGAAGAGCGCGAGGACGCCCGCGCGCCCGCGGTGC
TGCGCACGATCCCGGTCGACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66759:563..1285+

>mRNA_M-pyrifera_M_contig66759.16169.1 ID=mRNA_M-pyrifera_M_contig66759.16169.1|Name=mRNA_M-pyrifera_M_contig66759.16169.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1446bp|location=Sequence derived from alignment at M-pyrifera_M_contig66759:563..1285+ (Macrocystis pyrifera P11B4 male)
ATGTCCGCCCAGCTCGATCCGGAAGAGGTCCAGGCCATCGCCGACGCGAT
GGCCGAGGACGTCGGCGTGTCGACGCCGCCGGTCAACGAGCGCGACTTCC
GCATCCCGCGGCGGCTCAGCCTGGAGGTCGTCAAGCGCCTCGGCGACACG
CTGCGCAACCTGGTCCCGGCGCTCAAGCGCCAGTTCCAGGCGCTGGTGCC
GGTCACGATCGAGCTCGAGCCCCTGGGCGTGCGCGAGATCACCGCGCGCG
GGCTGTTCGAGGACCTCGAGCTGCCGTTCATCGTCGGCCGCTTCACGACC
CGCGGTGCGCCCGGCTGGGTCGTGTGGGAGCCGGCCCAGGCGATCGGCTG
CGTGCAGTCGGCGCTCGGCATGCCCGAACCCGACCTCGATCTGATCGACG
TCAACCACGAGCTGTCCTTCGTCGAGCGGCGCCTGATGGGCCGCATCCTC
GAGGAGCTGCTCGCGCCGCTGGCCGCGCGCTTCCACTTCGACGTCGACGA
CCTGTTCATCGCCGAGAAGCTCGACGACGTCGGCTCCTGGGAGGACGAAG
GCGCCGAGGCCGACGCGCACCGGTTGTGCATCGAGCTCGGACTGACCGCG
CTCGGCCAGACCCACACGATGACGCTGTACCTGCCGGGCTTCCTGCCCGC
CGAGGTCGAGGAGCACGAAGAGCGCGAGGACGCCCGCGCGCCCGCGGTGC
TGCGCACGATCCCGGTCGACGTGATGTCCGCCCAGCTCGATCCGGAAGAG
GTCCAGGCCATCGCCGACGCGATGGCCGAGGACGTCGGCGTGTCGACGCC
GCCGGTCAACGAGCGCGACTTCCGCATCCCGCGGCGGCTCAGCCTGGAGG
TCGTCAAGCGCCTCGGCGACACGCTGCGCAACCTGGTCCCGGCGCTCAAG
CGCCAGTTCCAGGCGCTGGTGCCGGTCACGATCGAGCTCGAGCCCCTGGG
CGTGCGCGAGATCACCGCGCGCGGGCTGTTCGAGGACCTCGAGCTGCCGT
TCATCGTCGGCCGCTTCACGACCCGCGGTGCGCCCGGCTGGGTCGTGTGG
GAGCCGGCCCAGGCGATCGGCTGCGTGCAGTCGGCGCTCGGCATGCCCGA
ACCCGACCTCGATCTGATCGACGTCAACCACGAGCTGTCCTTCGTCGAGC
GGCGCCTGATGGGCCGCATCCTCGAGGAGCTGCTCGCGCCGCTGGCCGCG
CGCTTCCACTTCGACGTCGACGACCTGTTCATCGCCGAGAAGCTCGACGA
CGTCGGCTCCTGGGAGGACGAAGGCGCCGAGGCCGACGCGCACCGGTTGT
GCATCGAGCTCGGACTGACCGCGCTCGGCCAGACCCACACGATGACGCTG
TACCTGCCGGGCTTCCTGCCCGCCGAGGTCGAGGAGCACGAAGAGCGCGA
GGACGCCCGCGCGCCCGCGGTGCTGCGCACGATCCCGGTCGACGTG
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