mRNA_M-pyrifera_M_contig66742.16165.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66742.16165.1
Unique NamemRNA_M-pyrifera_M_contig66742.16165.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66742.16165.1 vs. uniprot
Match: D7FVH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH9_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.190e-22
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 QGVGFRHAPDWDVYKNDDWGRRREVLRRLVNSVGTWVVRGRAGKRLAAIQ 153
            QGVGFRH PDWD+YKNDDWGRRREVLRRLVN VG W++R RAG+RL AIQ
Sbjct:  731 QGVGFRHKPDWDLYKNDDWGRRREVLRRLVNLVGAWIIRRRAGRRLGAIQ 780
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BLAST of mRNA_M-pyrifera_M_contig66742.16165.1 vs. uniprot
Match: A0A6H5LAN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.190e-22
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 QGVGFRHAPDWDVYKNDDWGRRREVLRRLVNSVGTWVVRGRAGKRLAAIQ 153
            QG+GFRH PDWD+YKNDDWGRRREVLRRLVN VG W+VR RAG+RL AIQ
Sbjct:  625 QGIGFRHKPDWDLYKNDDWGRRREVLRRLVNLVGAWIVRRRAGRRLGAIQ 674
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66742.16165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVH9_ECTSI4.190e-2282.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAN5_9PHAE4.190e-2282.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66742contigM-pyrifera_M_contig66742:734..886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D7FVH9
Preferred nameCFAP221
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs28KJC@1,2QT0T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.7568247-CDS-M-pyrifera_M_contig66742:733..8861622816557.7568247-CDS-M-pyrifera_M_contig66742:733..886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66742 734..886 -
1692278045.707281-CDS-M-pyrifera_M_contig66742:733..8861692278045.707281-CDS-M-pyrifera_M_contig66742:733..886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66742 734..886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66742.16165.1prot_M-pyrifera_M_contig66742.16165.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66742 734..886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66742.16165.1

>prot_M-pyrifera_M_contig66742.16165.1 ID=prot_M-pyrifera_M_contig66742.16165.1|Name=mRNA_M-pyrifera_M_contig66742.16165.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
MQGVGFRHAPDWDVYKNDDWGRRREVLRRLVNSVGTWVVRGRAGKRLAAI
Q
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mRNA from alignment at M-pyrifera_M_contig66742:734..886-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66742.16165.1 ID=mRNA_M-pyrifera_M_contig66742.16165.1|Name=mRNA_M-pyrifera_M_contig66742.16165.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig66742:734..886- (Macrocystis pyrifera P11B4 male)
ATGCAAGGAGTCGGTTTCCGACATGCTCCAGACTGGGACGTGTACAAGAA
TGACGACTGGGGTAGGCGGAGAGAGGTGCTGAGACGACTCGTCAACTCGG
TCGGGACGTGGGTTGTCAGAGGGAGGGCCGGGAAACGATTAGCGGCCATT
CAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66742:734..886-

>mRNA_M-pyrifera_M_contig66742.16165.1 ID=mRNA_M-pyrifera_M_contig66742.16165.1|Name=mRNA_M-pyrifera_M_contig66742.16165.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig66742:734..886- (Macrocystis pyrifera P11B4 male)
ATGCAAGGAGTCGGTTTCCGACATGCTCCAGACTGGGACGTGTACAAGAA
TGACGACTGGGGTAGGCGGAGAGAGGTGCTGAGACGACTCGTCAACTCGG
TCGGGACGTGGGTTGTCAGAGGGAGGGCCGGGAAACGATTAGCGGCCATT
CAGATGCAAGGAGTCGGTTTCCGACATGCTCCAGACTGGGACGTGTACAA
GAATGACGACTGGGGTAGGCGGAGAGAGGTGCTGAGACGACTCGTCAACT
CGGTCGGGACGTGGGTTGTCAGAGGGAGGGCCGGGAAACGATTAGCGGCC
ATTCAG
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