mRNA_M-pyrifera_M_contig66730.16164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66730.16164.1
Unique NamemRNA_M-pyrifera_M_contig66730.16164.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig66730.16164.1 vs. uniprot
Match: A0A6B2KWR6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KWR6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 5.980e-8
Identity = 41/137 (29.93%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:   40 LEARALRMSLSALVGAVSVDYRSLEGLQSALFSLKAELEALRP--VKALGASDVERGFRLRSRAAARDALKLSFSAPTSVHVLGSFMLRTHAKPNLAVDLGCELSRTSFAKRDLKHFTLHDLRCLWLSEVSRQLRGS 444
            +++    + L  ++  VSV+Y     ++ ++ +L   L  + P  V     SD++  F+  S    R    L F  PTSV V+GSF+L+T AKP L +D+  E+  ++F  RD K F  +D R ++L+ +++ L+ +
Sbjct:    1 MQSNLFALQLEEMLREVSVNYNQTRSIEVSIEALNQILSKMPPGRVTPQTFSDLK-FFKFYSGEGER---VLDFKPPTSVMVVGSFLLKTQAKPLLNIDMAIEIPSSTFKDRDKKDFVYYDKRNMYLAHIAQHLQNT 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig66730.16164.1 vs. uniprot
Match: A0A0L0FPF0_9EUKA (Nrap domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPF0_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 8.990e-7
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  229 ARDALKLSFSAPTSVHVLGSFMLRTHAKPNLAVDLGCELSRTSFAKRDLKHFTLHDLRCLWLSEVSRQLR 438
            A+  +  SF  PTSV+++GS++LRT AKP L++D+  E+    F ++D  ++  H  R L+L+ V+  L+
Sbjct:   59 AKTPVSFSFQTPTSVNLVGSYLLRTQAKPVLSIDVAVEMPIALFQEKDFMNYRYHAKRSLYLATVASALK 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig66730.16164.1 vs. uniprot
Match: A0A812UTH7_9DINO (Nol6 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UTH7_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 1.770e-6
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:  136 SLKAELEALRPV--KALGASDVERGF-------RLRSRAAARDALKLSFSAPTSVHVLGSFMLRTHAKPNLAVDLGCELSRTSFAKRDLKHFTLHDLRCLWLSEVSRQLRG 441
            +L+A L ALRP+  + L   D+   F       R   R  A  ++ L F+ P  + V+GSF+L T+ K  LA D+  E+    F  +D  +F  HD R  +L E+ RQL G
Sbjct:   73 ALEAALHALRPLLLEKLRTRDIPADFAREFPALRFVQRGGAAPSV-LRFAPPRRIDVVGSFLLGTYMKDELAADVAVEMPADMFRSKDYLNFRYHDKRAAYLGELHRQLCG 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig66730.16164.1 vs. uniprot
Match: A0A151ZET8_9MYCE (U3 snoRNP protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZET8_9MYCE)

HSP 1 Score: 53.5 bits (127), Expect = 2.090e-5
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:   58 RMSLSALVGAVSVDYRSLEGLQSALFSLKAELEALRPVKALGASDVERGFRLRSRAAARDALKLSFSAPTSVHVLGSFMLRTHAKPNLAVDLGCEL-SRTSFAK--RDLKHFTLHDLRCLW 411
            R+ ++ L   + VDY  L  L++AL  LK  +E +   +     +     ++     + + LK+ FS P+S+ ++GSFM +T  K NL VDL  E+ S T  AK   D K+FT  +L  LW
Sbjct:  156 RLQVNELFKEIKVDYIKLASLETALHQLKTLIEKIPDQQVDVYKNSIENVKVFDLTGSAEDLKIQFSKPSSIEIVGSFMTQTVHKNNLNVDLLLEIPSETITAKDANDFKYFTKRNL-YLW 275
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66730.16164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6B2KWR6_9EUKA5.980e-829.93Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A0L0FPF0_9EUKA8.990e-737.14Nrap domain-containing protein (Fragment) n=1 Tax=... [more]
A0A812UTH7_9DINO1.770e-635.14Nol6 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A151ZET8_9MYCE2.090e-533.88U3 snoRNP protein n=1 Tax=Tieghemostelium lacteum ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66730contigM-pyrifera_M_contig66730:19..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score63.9
Seed ortholog evalue7.1e-08
Seed eggNOG ortholog192875.XP_004345138.1
Preferred nameNOL6
KEGG koko:K14544
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000462,GO:0000793,GO:0000794,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031347,GO:0031348,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045184,GO:0045824,GO:0046483,GO:0046907,GO:0048519,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050776,GO:0050777,GO:0050789,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080134,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGs38FNZ@33154,KOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size444
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.7254725-CDS-M-pyrifera_M_contig66730:18..4621622816557.7254725-CDS-M-pyrifera_M_contig66730:18..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66730 19..462 -
1692278045.6926541-CDS-M-pyrifera_M_contig66730:18..4621692278045.6926541-CDS-M-pyrifera_M_contig66730:18..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66730 19..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66730.16164.1prot_M-pyrifera_M_contig66730.16164.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66730 19..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66730.16164.1

>prot_M-pyrifera_M_contig66730.16164.1 ID=prot_M-pyrifera_M_contig66730.16164.1|Name=mRNA_M-pyrifera_M_contig66730.16164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MPFFRGVDSEALALEARALRMSLSALVGAVSVDYRSLEGLQSALFSLKAE
LEALRPVKALGASDVERGFRLRSRAAARDALKLSFSAPTSVHVLGSFMLR
THAKPNLAVDLGCELSRTSFAKRDLKHFTLHDLRCLWLSEVSRQLRGS
back to top

mRNA from alignment at M-pyrifera_M_contig66730:19..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66730.16164.1 ID=mRNA_M-pyrifera_M_contig66730.16164.1|Name=mRNA_M-pyrifera_M_contig66730.16164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig66730:19..462- (Macrocystis pyrifera P11B4 male)
ATGCCTTTTTTCAGAGGCGTTGATTCGGAGGCACTGGCGTTAGAGGCGCG
AGCCCTACGCATGTCACTCTCTGCACTTGTTGGAGCAGTGTCTGTGGACT
ATCGAAGTCTAGAAGGTCTACAATCGGCACTCTTCTCCCTCAAGGCAGAA
TTGGAAGCATTACGTCCAGTCAAAGCATTGGGTGCCTCAGACGTAGAGCG
AGGATTTCGGTTGCGGTCGAGAGCAGCCGCAAGGGATGCGTTGAAACTGT
CATTTAGCGCACCTACATCTGTCCACGTTTTGGGCTCTTTCATGCTGCGT
ACACATGCAAAACCCAATTTGGCCGTGGATTTGGGTTGTGAATTATCACG
CACATCATTTGCGAAGCGTGATCTCAAACATTTTACCCTCCACGACTTGC
GCTGCCTCTGGCTCTCGGAGGTCAGCCGCCAACTGCGTGGTTCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66730:19..462-

>mRNA_M-pyrifera_M_contig66730.16164.1 ID=mRNA_M-pyrifera_M_contig66730.16164.1|Name=mRNA_M-pyrifera_M_contig66730.16164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig66730:19..462- (Macrocystis pyrifera P11B4 male)
ATGCCTTTTTTCAGAGGCGTTGATTCGGAGGCACTGGCGTTAGAGGCGCG
AGCCCTACGCATGTCACTCTCTGCACTTGTTGGAGCAGTGTCTGTGGACT
ATCGAAGTCTAGAAGGTCTACAATCGGCACTCTTCTCCCTCAAGGCAGAA
TTGGAAGCATTACGTCCAGTCAAAGCATTGGGTGCCTCAGACGTAGAGCG
AGGATTTCGGTTGCGGTCGAGAGCAGCCGCAAGGGATGCGTTGAAACTGT
CATTTAGCGCACCTACATCTGTCCACGTTTTGGGCTCTTTCATGCTGCGT
ACACATGCAAAACCCAATTTGGCCGTGGATTTGGGTTGTGAATTATCACG
CACATCATTTGCGAAGCGTGATCTCAAACATTTTACCCTCCACGACTTGC
GCTGCCTCTGGCTCTCGGAGGTCAGCCGCCAACTGCGTGGTTCTATGCCT
TTTTTCAGAGGCGTTGATTCGGAGGCACTGGCGTTAGAGGCGCGAGCCCT
ACGCATGTCACTCTCTGCACTTGTTGGAGCAGTGTCTGTGGACTATCGAA
GTCTAGAAGGTCTACAATCGGCACTCTTCTCCCTCAAGGCAGAATTGGAA
GCATTACGTCCAGTCAAAGCATTGGGTGCCTCAGACGTAGAGCGAGGATT
TCGGTTGCGGTCGAGAGCAGCCGCAAGGGATGCGTTGAAACTGTCATTTA
GCGCACCTACATCTGTCCACGTTTTGGGCTCTTTCATGCTGCGTACACAT
GCAAAACCCAATTTGGCCGTGGATTTGGGTTGTGAATTATCACGCACATC
ATTTGCGAAGCGTGATCTCAAACATTTTACCCTCCACGACTTGCGCTGCC
TCTGGCTCTCGGAGGTCAGCCGCCAACTGCGTGGTTCT
back to top