mRNA_M-pyrifera_M_contig66728.16163.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A6P4Y0M2_BRABE (Voltage-gated hydrogen channel 1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y0M2_BRABE) HSP 1 Score: 68.6 bits (166), Expect = 2.210e-10 Identity = 55/179 (30.73%), Postives = 92/179 (51.40%), Query Frame = 1
Query: 1 CFPSLRVRLESPFLQLVVVLLVLLDVLAVFGEILL---VVVCHEDAP------TGEGGEEG-------GHRLLESXXXXXXXXXS--EQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQE-------SPGGGLLAVILLWRVVRVVHGFAVTIETE 462
C L+ LE + + +V+L++LD L V E+L+ V+ D P G G G GH ++++ + E LHV S+ IL IF+++ L I V +L+FF+ +VLD V+V V++GL++ + GGLL ++ LWR+ R+V+G +++E E
Sbjct: 263 CRHKLKHMLERQSVHIAIVVLIVLDTLIVIMELLIDVRVIKLCPDPPDVCVPKAGHNGTTGLVTTGAPGHHVIDAGDHGTGGHEECHHVLIEVLHVVSILILCIFVVEIALKIYVDRLEFFKNGFHVLDAVVVLVSLGLDIASLVRPSAFTDAGGLLILLRLWRITRIVNGIIISVEEE 441
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A8J9YKD3_BRALA (HVCN1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YKD3_BRALA) HSP 1 Score: 65.1 bits (157), Expect = 2.510e-9 Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 136 GEGGEEGGHRLLESXXXXXXXXXSEQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQE-------SPGGGLLAVILLWRVVRVVHGFAVTIETE 462
G GG EG H + E LHV S+ IL IF+++ L I V +L+FF+ +VLD V+V V++GL++ + GGLL ++ LWRV R+V+G +++E E
Sbjct: 160 GTGGHEGCHHVF---------------VEVLHVVSILILCIFVVEIALKIYVDRLEFFKNGFHVLDAVVVLVSLGLDIASLVHPSAFTDAGGLLILLRLWRVTRIVNGIIISVEEE 260
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A7S2FA71_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA71_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 5.370e-9 Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 217 EEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQE------SPGGGLLAVILLWRVVRVVHGFAVTIETEHHATEEAEKQAKLLHER 513
E L++ S++IL+IF +Q +L+ ++ +FF YVLDLV+V A+ LE GGGL A++L WR+VRV+HG +IE ++ A+ AK+ H+R
Sbjct: 136 EIALNILSVSILSIFAMQISMLMFLYGKEFFANAFYVLDLVVVFGALLLETSHWHQWFIVQGGGLFALLLFWRIVRVIHGLFTSIEMQY-----AKLDAKITHDR 235
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A2K1L3E6_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L3E6_PHYPA) HSP 1 Score: 63.2 bits (152), Expect = 1.010e-8 Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 235 TSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHG-FAVTIETEHHATEEAEKQAK 498
TS+ IL +L + LI F FF P+YVLDLV+V+ A+GLEV ++ GL+ ++ LWR+VRV HG F VT E + E E Q K
Sbjct: 155 TSIVILXXLMLNVLGLIVAFGRSFFLHPLYVLDLVVVSTALGLEVLLDADTAGLIIILTLWRIVRVAHGIFEVTDEAWEKSIRELETQVK 244
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A7I4D9H7_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4D9H7_PHYPA) HSP 1 Score: 63.2 bits (152), Expect = 1.200e-8 Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 235 TSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHG-FAVTIETEHHATEEAEKQAK 498
TS+ IL +L + LI F FF P+YVLDLV+V+ A+GLEV ++ GL+ ++ LWR+VRV HG F VT E + E E Q K
Sbjct: 187 TSIVILXXLMLNVLGLIVAFGRSFFLHPLYVLDLVVVSTALGLEVLLDADTAGLIIILTLWRIVRVAHGIFEVTDEAWEKSIRELETQVK 276
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A0G4F510_VITBC (Voltage-gated hydrogen channel 1 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F510_VITBC) HSP 1 Score: 60.1 bits (144), Expect = 1.500e-7 Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 1
Query: 40 LQLVVVLLVLLDVLAVFGEILLVVVCHED-APTGEGGEEGGHRLLESXXXXXXXXXSEQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQESPGGGLLAVILLWRVVRVVHGFAV 447
+ ++VVLL LL + VFG E A GE G GH E+ +E LH+ L IL IF L +L + F +FF YV DL++ ++ LE+ G L+AV+ +WR+VR+VHG A+
Sbjct: 135 IDVIVVLLELLALEGVFGGEGACAFKKEGLAHGGEKGHGEGHSTYET------------IEHTLHIIGLTILCIFNLDVLLHLVAFGWRFFYHLGYVTDLLVAPTSLALELYFPSAGSLIAVVRMWRIVRIVHGIAI 259
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: B3RRR9_TRIAD (Voltage-gated hydrogen channel 1 n=2 Tax=Trichoplax TaxID=10227 RepID=B3RRR9_TRIAD) HSP 1 Score: 58.5 bits (140), Expect = 3.680e-7 Identity = 54/181 (29.83%), Postives = 84/181 (46.41%), Query Frame = 1
Query: 10 SLRVRLESPFLQLVVVLLVLLDVLAVFGEILL---VVVCHEDAPTGEGGEEGGHRLLESXXXXXXXXXSEQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQES-----PGGGLLAVILLWRVVRVVHGFAVTIETE-----HHATEEAEKQAKLLHER 513
LR + S + + +V+LV+LD L V E+L+ V+ H +P + H TS+AILAIFL++ VL + L FF V D +IV V+ L++ S G GLL V+ LWR+ R+V+G +++++ HH E EK L ++
Sbjct: 37 KLRQLIYSHKVHIAIVVLVILDALIVIAELLIDLSVIKVHHTSP---------------------------LARAFHFTSIAILAIFLVEIVLKLYASDLAFFLHYFEVFDALIVIVSFVLDIAYSNSEALSGVGLLVVLRLWRIARIVNGIISSVKSQANDKIHHLRRELEKTRSYLEQK 190
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A7S2C613_9STRA (Voltage-gated hydrogen channel 1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C613_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 7.630e-7 Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 226 LHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHGFAVTIETEHHATEEAEKQAK 498
L V S++IL IF Q +L+ ++ L FF+ YVLDLV+VA A+ LE+ + GG L ++L WR RVVHG ++E H + KQ K
Sbjct: 101 LSVLSISILWIFATQVGMLMIIYGLDFFKNLWYVLDLVVVAGALILELAIKVTGGPLFTLLLSWRFFRVVHGLLTSMELTHKREHDKVKQLK 192
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: D3BSH5_POLPP (Voltage-gated hydrogen channel 1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BSH5_POLPP) HSP 1 Score: 57.4 bits (137), Expect = 1.110e-6 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 208 EQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHGFAVTIE 456
E+ E L V +L IL IF ++ + L+ F FF P YVLDLV++ ++ ++V G LL + LWRVVR+ HG A+++E
Sbjct: 145 ERTESVLRVITLVILGIFEIEIIALMLAFGRDFFFHPFYVLDLVVITTSIVVDVVFRDNAGALLVIFRLWRVVRIGHGIAMSVE 228
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A1S4CVW0_TOBAC (voltage-gated hydrogen channel 1 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4CVW0_TOBAC) HSP 1 Score: 54.7 bits (130), Expect = 1.950e-6 Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 223 GLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVV 432
+H + IL + L+ + L+ FFR+P Y+LD ++V VA+ LEV E GGGLL V+ LWR+VRVV
Sbjct: 2 SIHDNGIIILGLLFLKSIGLVIGLGRSFFRRPGYLLDSIVVVVALFLEVYLEKKGGGLLVVVSLWRIVRVV 72 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig66728.16163.1 >prot_M-pyrifera_M_contig66728.16163.1 ID=prot_M-pyrifera_M_contig66728.16163.1|Name=mRNA_M-pyrifera_M_contig66728.16163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp CFPSLRVRLESPFLQLVVVLLVLLDVLAVFGEILLVVVCHEDAPTGEGGEback to top mRNA from alignment at M-pyrifera_M_contig66728:23..538- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig66728.16163.1 ID=mRNA_M-pyrifera_M_contig66728.16163.1|Name=mRNA_M-pyrifera_M_contig66728.16163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig66728:23..538- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig66728:23..538- >mRNA_M-pyrifera_M_contig66728.16163.1 ID=mRNA_M-pyrifera_M_contig66728.16163.1|Name=mRNA_M-pyrifera_M_contig66728.16163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig66728:23..538- (Macrocystis pyrifera P11B4 male)back to top |