mRNA_M-pyrifera_M_contig66728.16163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66728.16163.1
Unique NamemRNA_M-pyrifera_M_contig66728.16163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A6P4Y0M2_BRABE (Voltage-gated hydrogen channel 1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y0M2_BRABE)

HSP 1 Score: 68.6 bits (166), Expect = 2.210e-10
Identity = 55/179 (30.73%), Postives = 92/179 (51.40%), Query Frame = 1
Query:    1 CFPSLRVRLESPFLQLVVVLLVLLDVLAVFGEILL---VVVCHEDAP------TGEGGEEG-------GHRLLESXXXXXXXXXS--EQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQE-------SPGGGLLAVILLWRVVRVVHGFAVTIETE 462
            C   L+  LE   + + +V+L++LD L V  E+L+   V+    D P       G  G  G       GH ++++              + E LHV S+ IL IF+++  L I V +L+FF+   +VLD V+V V++GL++         +  GGLL ++ LWR+ R+V+G  +++E E
Sbjct:  263 CRHKLKHMLERQSVHIAIVVLIVLDTLIVIMELLIDVRVIKLCPDPPDVCVPKAGHNGTTGLVTTGAPGHHVIDAGDHGTGGHEECHHVLIEVLHVVSILILCIFVVEIALKIYVDRLEFFKNGFHVLDAVVVLVSLGLDIASLVRPSAFTDAGGLLILLRLWRITRIVNGIIISVEEE 441          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A8J9YKD3_BRALA (HVCN1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YKD3_BRALA)

HSP 1 Score: 65.1 bits (157), Expect = 2.510e-9
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  136 GEGGEEGGHRLLESXXXXXXXXXSEQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQE-------SPGGGLLAVILLWRVVRVVHGFAVTIETE 462
            G GG EG H +                 E LHV S+ IL IF+++  L I V +L+FF+   +VLD V+V V++GL++         +  GGLL ++ LWRV R+V+G  +++E E
Sbjct:  160 GTGGHEGCHHVF---------------VEVLHVVSILILCIFVVEIALKIYVDRLEFFKNGFHVLDAVVVLVSLGLDIASLVHPSAFTDAGGLLILLRLWRVTRIVNGIIISVEEE 260          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A7S2FA71_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA71_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.370e-9
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  217 EEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQE------SPGGGLLAVILLWRVVRVVHGFAVTIETEHHATEEAEKQAKLLHER 513
            E  L++ S++IL+IF +Q  +L+ ++  +FF    YVLDLV+V  A+ LE           GGGL A++L WR+VRV+HG   +IE ++     A+  AK+ H+R
Sbjct:  136 EIALNILSVSILSIFAMQISMLMFLYGKEFFANAFYVLDLVVVFGALLLETSHWHQWFIVQGGGLFALLLFWRIVRVIHGLFTSIEMQY-----AKLDAKITHDR 235          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A2K1L3E6_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L3E6_PHYPA)

HSP 1 Score: 63.2 bits (152), Expect = 1.010e-8
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  235 TSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHG-FAVTIETEHHATEEAEKQAK 498
            TS+ IL   +L  + LI  F   FF  P+YVLDLV+V+ A+GLEV  ++   GL+ ++ LWR+VRV HG F VT E    +  E E Q K
Sbjct:  155 TSIVILXXLMLNVLGLIVAFGRSFFLHPLYVLDLVVVSTALGLEVLLDADTAGLIIILTLWRIVRVAHGIFEVTDEAWEKSIRELETQVK 244          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A7I4D9H7_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4D9H7_PHYPA)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-8
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  235 TSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHG-FAVTIETEHHATEEAEKQAK 498
            TS+ IL   +L  + LI  F   FF  P+YVLDLV+V+ A+GLEV  ++   GL+ ++ LWR+VRV HG F VT E    +  E E Q K
Sbjct:  187 TSIVILXXLMLNVLGLIVAFGRSFFLHPLYVLDLVVVSTALGLEVLLDADTAGLIIILTLWRIVRVAHGIFEVTDEAWEKSIRELETQVK 276          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A0G4F510_VITBC (Voltage-gated hydrogen channel 1 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F510_VITBC)

HSP 1 Score: 60.1 bits (144), Expect = 1.500e-7
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 1
Query:   40 LQLVVVLLVLLDVLAVFGEILLVVVCHED-APTGEGGEEGGHRLLESXXXXXXXXXSEQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQESPGGGLLAVILLWRVVRVVHGFAV 447
            + ++VVLL LL +  VFG         E  A  GE G   GH   E+            +E  LH+  L IL IF L  +L +  F  +FF    YV DL++   ++ LE+     G L+AV+ +WR+VR+VHG A+
Sbjct:  135 IDVIVVLLELLALEGVFGGEGACAFKKEGLAHGGEKGHGEGHSTYET------------IEHTLHIIGLTILCIFNLDVLLHLVAFGWRFFYHLGYVTDLLVAPTSLALELYFPSAGSLIAVVRMWRIVRIVHGIAI 259          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: B3RRR9_TRIAD (Voltage-gated hydrogen channel 1 n=2 Tax=Trichoplax TaxID=10227 RepID=B3RRR9_TRIAD)

HSP 1 Score: 58.5 bits (140), Expect = 3.680e-7
Identity = 54/181 (29.83%), Postives = 84/181 (46.41%), Query Frame = 1
Query:   10 SLRVRLESPFLQLVVVLLVLLDVLAVFGEILL---VVVCHEDAPTGEGGEEGGHRLLESXXXXXXXXXSEQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQES-----PGGGLLAVILLWRVVRVVHGFAVTIETE-----HHATEEAEKQAKLLHER 513
             LR  + S  + + +V+LV+LD L V  E+L+   V+  H  +P                           +    H TS+AILAIFL++ VL +    L FF     V D +IV V+  L++  S      G GLL V+ LWR+ R+V+G   +++++     HH   E EK    L ++
Sbjct:   37 KLRQLIYSHKVHIAIVVLVILDALIVIAELLIDLSVIKVHHTSP---------------------------LARAFHFTSIAILAIFLVEIVLKLYASDLAFFLHYFEVFDALIVIVSFVLDIAYSNSEALSGVGLLVVLRLWRIARIVNGIISSVKSQANDKIHHLRRELEKTRSYLEQK 190          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A7S2C613_9STRA (Voltage-gated hydrogen channel 1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C613_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.630e-7
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  226 LHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHGFAVTIETEHHATEEAEKQAK 498
            L V S++IL IF  Q  +L+ ++ L FF+   YVLDLV+VA A+ LE+  +  GG L  ++L WR  RVVHG   ++E  H    +  KQ K
Sbjct:  101 LSVLSISILWIFATQVGMLMIIYGLDFFKNLWYVLDLVVVAGALILELAIKVTGGPLFTLLLSWRFFRVVHGLLTSMELTHKREHDKVKQLK 192          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: D3BSH5_POLPP (Voltage-gated hydrogen channel 1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BSH5_POLPP)

HSP 1 Score: 57.4 bits (137), Expect = 1.110e-6
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  208 EQVEEGLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVVHGFAVTIE 456
            E+ E  L V +L IL IF ++ + L+  F   FF  P YVLDLV++  ++ ++V      G LL +  LWRVVR+ HG A+++E
Sbjct:  145 ERTESVLRVITLVILGIFEIEIIALMLAFGRDFFFHPFYVLDLVVITTSIVVDVVFRDNAGALLVIFRLWRVVRIGHGIAMSVE 228          
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Match: A0A1S4CVW0_TOBAC (voltage-gated hydrogen channel 1 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4CVW0_TOBAC)

HSP 1 Score: 54.7 bits (130), Expect = 1.950e-6
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  223 GLHVTSLAILAIFLLQQVLLIGVFQLKFFRKPMYVLDLVIVAVAMGLEVQ-ESPGGGLLAVILLWRVVRVV 432
             +H   + IL +  L+ + L+      FFR+P Y+LD ++V VA+ LEV  E  GGGLL V+ LWR+VRVV
Sbjct:    2 SIHDNGIIILGLLFLKSIGLVIGLGRSFFRRPGYLLDSIVVVVALFLEVYLEKKGGGLLVVVSLWRIVRVV 72          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66728.16163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6P4Y0M2_BRABE2.210e-1030.73Voltage-gated hydrogen channel 1 n=1 Tax=Branchios... [more]
A0A8J9YKD3_BRALA2.510e-936.21HVCN1 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A7S2FA71_9STRA5.370e-939.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2K1L3E6_PHYPA1.010e-845.56Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
A0A7I4D9H7_PHYPA1.200e-845.56Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A0G4F510_VITBC1.500e-735.04Voltage-gated hydrogen channel 1 n=1 Tax=Vitrella ... [more]
B3RRR9_TRIAD3.680e-729.83Voltage-gated hydrogen channel 1 n=2 Tax=Trichopla... [more]
A0A7S2C613_9STRA7.630e-742.39Voltage-gated hydrogen channel 1 n=1 Tax=Florencie... [more]
D3BSH5_POLPP1.110e-640.48Voltage-gated hydrogen channel 1 n=1 Tax=Polysphon... [more]
A0A1S4CVW0_TOBAC1.950e-645.07voltage-gated hydrogen channel 1 n=1 Tax=Nicotiana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66728contigM-pyrifera_M_contig66728:23..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog3218.PP1S22_163V6.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Voltage-gated hydrogen channel
EggNOG OGs29QCU@1,2QQMU@2759,37TBM@33090,3GICW@35493
Ec32 ortholog descriptionVoltage-dependent channel, four helix bundle domain
Ec32 orthologEc-05_005470.1
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.6890292-CDS-M-pyrifera_M_contig66728:22..5381622816557.6890292-CDS-M-pyrifera_M_contig66728:22..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66728 23..538 -
1692278045.681375-CDS-M-pyrifera_M_contig66728:22..5381692278045.681375-CDS-M-pyrifera_M_contig66728:22..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66728 23..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66728.16163.1prot_M-pyrifera_M_contig66728.16163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66728 23..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66728.16163.1

>prot_M-pyrifera_M_contig66728.16163.1 ID=prot_M-pyrifera_M_contig66728.16163.1|Name=mRNA_M-pyrifera_M_contig66728.16163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
CFPSLRVRLESPFLQLVVVLLVLLDVLAVFGEILLVVVCHEDAPTGEGGE
EGGHRLLESGGDEGGHSLSEQVEEGLHVTSLAILAIFLLQQVLLIGVFQL
KFFRKPMYVLDLVIVAVAMGLEVQESPGGGLLAVILLWRVVRVVHGFAVT
IETEHHATEEAEKQAKLLHERA
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mRNA from alignment at M-pyrifera_M_contig66728:23..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66728.16163.1 ID=mRNA_M-pyrifera_M_contig66728.16163.1|Name=mRNA_M-pyrifera_M_contig66728.16163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig66728:23..538- (Macrocystis pyrifera P11B4 male)
TGTTTTCCTTCTTTGCGTGTCAGGTTGGAGAGTCCTTTCCTCCAGTTGGT GGTTGTGTTGCTGGTGTTGTTGGACGTTTTGGCGGTGTTTGGAGAGATTT TGCTGGTTGTGGTGTGCCACGAGGATGCCCCGACGGGCGAGGGAGGCGAG GAGGGTGGTCACCGTTTGCTGGAGTCTGGTGGGGATGAGGGAGGGCACAG TTTGTCGGAGCAGGTGGAGGAGGGCTTGCACGTGACGTCGCTTGCGATTT TGGCCATTTTCCTGCTGCAGCAGGTGCTGCTGATCGGGGTGTTCCAGCTC AAGTTCTTCCGAAAGCCCATGTACGTGCTGGATTTGGTGATCGTTGCGGT GGCGATGGGCTTGGAAGTGCAGGAAAGTCCCGGAGGAGGTCTGTTGGCCG TGATTCTGCTGTGGAGAGTGGTGCGGGTGGTGCATGGATTCGCAGTGACC ATCGAAACGGAACACCACGCCACCGAGGAAGCCGAAAAACAGGCCAAACT GCTCCACGAACGGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66728:23..538-

>mRNA_M-pyrifera_M_contig66728.16163.1 ID=mRNA_M-pyrifera_M_contig66728.16163.1|Name=mRNA_M-pyrifera_M_contig66728.16163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig66728:23..538- (Macrocystis pyrifera P11B4 male)
TGTTTTCCTTCTTTGCGTGTCAGGTTGGAGAGTCCTTTCCTCCAGTTGGT
GGTTGTGTTGCTGGTGTTGTTGGACGTTTTGGCGGTGTTTGGAGAGATTT
TGCTGGTTGTGGTGTGCCACGAGGATGCCCCGACGGGCGAGGGAGGCGAG
GAGGGTGGTCACCGTTTGCTGGAGTCTGGTGGGGATGAGGGAGGGCACAG
TTTGTCGGAGCAGGTGGAGGAGGGCTTGCACGTGACGTCGCTTGCGATTT
TGGCCATTTTCCTGCTGCAGCAGGTGCTGCTGATCGGGGTGTTCCAGCTC
AAGTTCTTCCGAAAGCCCATGTACGTGCTGGATTTGGTGATCGTTGCGGT
GGCGATGGGCTTGGAAGTGCAGGAAAGTCCCGGAGGAGGTCTGTTGGCCG
TGATTCTGCTGTGGAGAGTGGTGCGGGTGGTGCATGGATTCGCAGTGACC
ATCGAAACGGAACACCACGCCACCGAGGAAGCCGAAAAACAGGCCAAACT
GCTCCACGAACGGGCGTGTTTTCCTTCTTTGCGTGTCAGGTTGGAGAGTC
CTTTCCTCCAGTTGGTGGTTGTGTTGCTGGTGTTGTTGGACGTTTTGGCG
GTGTTTGGAGAGATTTTGCTGGTTGTGGTGTGCCACGAGGATGCCCCGAC
GGGCGAGGGAGGCGAGGAGGGTGGTCACCGTTTGCTGGAGTCTGGTGGGG
ATGAGGGAGGGCACAGTTTGTCGGAGCAGGTGGAGGAGGGCTTGCACGTG
ACGTCGCTTGCGATTTTGGCCATTTTCCTGCTGCAGCAGGTGCTGCTGAT
CGGGGTGTTCCAGCTCAAGTTCTTCCGAAAGCCCATGTACGTGCTGGATT
TGGTGATCGTTGCGGTGGCGATGGGCTTGGAAGTGCAGGAAAGTCCCGGA
GGAGGTCTGTTGGCCGTGATTCTGCTGTGGAGAGTGGTGCGGGTGGTGCA
TGGATTCGCAGTGACCATCGAAACGGAACACCACGCCACCGAGGAAGCCG
AAAAACAGGCCAAACTGCTCCACGAACGGGCG
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