mRNA_M-pyrifera_M_contig66659.16152.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66659.16152.1
Unique NamemRNA_M-pyrifera_M_contig66659.16152.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66659.16152.1 vs. uniprot
Match: UPI00148A204D (uncharacterized protein LOC105328214 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A204D)

HSP 1 Score: 52.8 bits (125), Expect = 3.780e-6
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   49 LKVGDIVRRGPGWGFGSQDGKPGALGTVMELRPDGEACTVAWDCGGRYSYEAGHGRRGDLEV 234
            + VG +VRRGP W +G QDG PG +GTV  L+   E   V W  G + +Y  G+    D+E+
Sbjct:  383 IAVGCLVRRGPDWKWGDQDGGPGNIGTVFRLKTPTEIY-VRWPNGNKSNYRYGYRGYRDIEI 443
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BLAST of mRNA_M-pyrifera_M_contig66659.16152.1 vs. uniprot
Match: A0A8B8E2Z0_CRAVI (uncharacterized protein LOC111131047 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8E2Z0_CRAVI)

HSP 1 Score: 50.1 bits (118), Expect = 3.340e-5
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:   55 VGDIVRRGPGWGFGSQDGKPGALGTVMELRPDGEACTVAWDCGGRYSYEAGHGRRGDLEV 234
            VG +V+RGP W +G QDG  G++GTV     D     V W CG + +Y  G+  + D+ +
Sbjct:  172 VGCLVKRGPDWKWGDQDGGIGSIGTVYRTM-DNSTVYVRWPCGQKSNYRFGYDGKFDINI 230
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BLAST of mRNA_M-pyrifera_M_contig66659.16152.1 vs. uniprot
Match: A0A8B8E117_CRAVI (uncharacterized protein LOC111130316 isoform X1 n=3 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8E117_CRAVI)

HSP 1 Score: 50.1 bits (118), Expect = 3.410e-5
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:   55 VGDIVRRGPGWGFGSQDGKPGALGTVMELRPDGEACTVAWDCGGRYSYEAGHGRRGDLEV 234
            VG +V+RGP W +G QDG  G++GTV     D     V W CG + +Y  G+  + D+ +
Sbjct:  378 VGCLVKRGPDWKWGDQDGGIGSIGTVYRTM-DNSTVYVRWPCGQKSNYRFGYDGKFDINI 436
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BLAST of mRNA_M-pyrifera_M_contig66659.16152.1 vs. uniprot
Match: A0A6J8B4Y8_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8B4Y8_MYTCO)

HSP 1 Score: 50.1 bits (118), Expect = 3.450e-5
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   49 LKVGDIVRRGPGWGFGSQDGKPGALGTVMELRPDGEACTVAWDCGGRYSYEAGHGRRGDLEV 234
            + VG  V RG  W FG  DG PG++GTV+++R +G    V WDC     Y+ G+  R ++ +
Sbjct:  808 IAVGCRVVRGQDWKFGDTDGGPGSIGTVLDVRREGNV-VVRWDCKRTCLYKMGYKGRFEIRL 868
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BLAST of mRNA_M-pyrifera_M_contig66659.16152.1 vs. uniprot
Match: UPI00148A2511 (uncharacterized protein LOC105330031 isoform X1 n=4 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A2511)

HSP 1 Score: 49.3 bits (116), Expect = 6.220e-5
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   49 LKVGDIVRRGPGWGFGSQDGKPGALGTVMELRPDGEACTVAWDCGGRYSYEAGHGRRGDL 228
            + +G +VR+GP W +G+Q+G   ++GTV  ++P GE   V W  G + +Y  G+  R DL
Sbjct:  368 IAIGCLVRKGPHWQWGNQNGSEDSIGTVYRIKPRGEVY-VRWPNGTKSNYRFGYKDRYDL 426
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BLAST of mRNA_M-pyrifera_M_contig66659.16152.1 vs. uniprot
Match: A0A7R8ZIT4_9CRUS (RING-type E3 ubiquitin transferase n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZIT4_9CRUS)

HSP 1 Score: 48.9 bits (115), Expect = 8.850e-5
Identity = 26/70 (37.14%), Postives = 36/70 (51.43%), Query Frame = 1 
Query:   40 VGGLKVGDIVRRGPGWGFGSQDGKPGALGTVMELRP---DGE--ACTVAWDCGGRYSYEAGHGRRGDLEV 234
            + G+  G  V RGP W +G QDG PG +G V+++R    D E     V W  G    Y  GH  + DL++
Sbjct:  190 IQGIFTGARVERGPDWDWGMQDGGPGKVGRVVDIRGWDNDSEFSVANVVWSSGSTNVYRVGHKGKVDLKL 259
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66659.16152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00148A204D3.780e-641.94uncharacterized protein LOC105328214 n=1 Tax=Crass... [more]
A0A8B8E2Z0_CRAVI3.340e-538.33uncharacterized protein LOC111131047 n=1 Tax=Crass... [more]
A0A8B8E117_CRAVI3.410e-538.33uncharacterized protein LOC111130316 isoform X1 n=... [more]
A0A6J8B4Y8_MYTCO3.450e-538.71Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
UPI00148A25116.220e-538.33uncharacterized protein LOC105330031 isoform X1 n=... [more]
A0A7R8ZIT4_9CRUS8.850e-537.14RING-type E3 ubiquitin transferase n=1 Tax=Cypride... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66659contigM-pyrifera_M_contig66659:62..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.7669332-CDS-M-pyrifera_M_contig66659:61..2801622816556.7669332-CDS-M-pyrifera_M_contig66659:61..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66659 62..280 -
1692278045.0093763-CDS-M-pyrifera_M_contig66659:61..2801692278045.0093763-CDS-M-pyrifera_M_contig66659:61..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66659 62..280 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.7776003-UTR-M-pyrifera_M_contig66659:280..2981622816556.7776003-UTR-M-pyrifera_M_contig66659:280..298Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66659 281..298 -
1692278045.0201035-UTR-M-pyrifera_M_contig66659:280..2981692278045.0201035-UTR-M-pyrifera_M_contig66659:280..298Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66659 281..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66659.16152.1prot_M-pyrifera_M_contig66659.16152.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66659 62..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66659.16152.1

>prot_M-pyrifera_M_contig66659.16152.1 ID=prot_M-pyrifera_M_contig66659.16152.1|Name=mRNA_M-pyrifera_M_contig66659.16152.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MPWLPADVGGLKVGDIVRRGPGWGFGSQDGKPGALGTVMELRPDGEACTV
AWDCGGRYSYEAGHGRRGDLEVF
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mRNA from alignment at M-pyrifera_M_contig66659:62..298-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66659.16152.1 ID=mRNA_M-pyrifera_M_contig66659.16152.1|Name=mRNA_M-pyrifera_M_contig66659.16152.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig66659:62..298- (Macrocystis pyrifera P11B4 male)
TCAGATGCAGATCCAACCATGCCATGGTTACCAGCAGATGTTGGAGGGTT
GAAGGTTGGTGATATTGTGAGAAGAGGTCCTGGGTGGGGATTTGGATCAC
AAGATGGAAAACCTGGTGCATTGGGAACTGTGATGGAATTACGACCTGAT
GGGGAAGCATGTACAGTTGCTTGGGATTGTGGTGGAAGATATTCGTATGA
AGCTGGTCATGGGAGGAGAGGGGATTTGGAGGTGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66659:62..298-

>mRNA_M-pyrifera_M_contig66659.16152.1 ID=mRNA_M-pyrifera_M_contig66659.16152.1|Name=mRNA_M-pyrifera_M_contig66659.16152.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig66659:62..298- (Macrocystis pyrifera P11B4 male)
ATGCCATGGTTACCAGCAGATGTTGGAGGGTTGAAGGTTGGTGATATTGT
GAGAAGAGGTCCTGGGTGGGGATTTGGATCACAAGATGGAAAACCTGGTG
CATTGGGAACTGTGATGGAATTACGACCTGATGGGGAAGCATGTACAGTT
GCTTGGGATTGTGGTGGAAGATATTCGTATGAAGCTGGTCATGGGAGGAG
AGGGGATTTGGAGGTGTTTATGCCATGGTTACCAGCAGATGTTGGAGGGT
TGAAGGTTGGTGATATTGTGAGAAGAGGTCCTGGGTGGGGATTTGGATCA
CAAGATGGAAAACCTGGTGCATTGGGAACTGTGATGGAATTACGACCTGA
TGGGGAAGCATGTACAGTTGCTTGGGATTGTGGTGGAAGATATTCGTATG
AAGCTGGTCATGGGAGGAGAGGGGATTTGGAGGTGTTT
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