mRNA_M-pyrifera_M_contig6658.16142.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6658.16142.1
Unique NamemRNA_M-pyrifera_M_contig6658.16142.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 1.860e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
Query:   73 SMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            SMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:   61 SMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 275 bits (702), Expect = 2.350e-90
Identity = 136/145 (93.79%), Postives = 144/145 (99.31%), Query Frame = 1
Query:   76 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            MGKGKP+GIRAGRKLRIHRRN+RWASKDYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:    1 MGKGKPSGIRAGRKLRIHRRNQRWASKDYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 258 bits (660), Expect = 5.550e-84
Identity = 127/145 (87.59%), Postives = 138/145 (95.17%), Query Frame = 1
Query:   76 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            MGKGKPAG  AGRKLR+HRRNE+WASK +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:    1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 255 bits (652), Expect = 9.080e-83
Identity = 128/145 (88.28%), Postives = 135/145 (93.10%), Query Frame = 1
Query:   76 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            MGK KP+GIR  RKLR+HRR +RWA K YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DENDEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:    1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 253 bits (646), Expect = 1.600e-81
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 1
Query:   91 PAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            PAGIR  RKLR+HRR +RW  K YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   29 PAGIRCARKLRVHRRTQRWNQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: A0A7S2WV04_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV04_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.270e-80
Identity = 125/146 (85.62%), Postives = 138/146 (94.52%), Query Frame = 1
Query:   73 SMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            +MGK KP+GIRAGRKLR+HRR +RWA+  Y KS+SVTA+KANP GG+ MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNFTDENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:   12 TMGKHKPSGIRAGRKLRVHRRAQRWANLKYVKSNSVTALKANPFGGACMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRT 157          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 249 bits (637), Expect = 1.600e-80
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 1
Query:   85 GKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            GKPAGIR GRKLRIHRRN+RW    Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct:    2 GKPAGIRTGRKLRIHRRNQRWHDLKYTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: A0A5A8EIQ0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO)

HSP 1 Score: 247 bits (630), Expect = 1.960e-79
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 1
Query:   76 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            M +GKPAGI+A RKLR HRR +RWA K YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DENDEVLISGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPRS
Sbjct:    1 MTRGKPAGIQAARKLRNHRREQRWAQKTYNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDENDEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: A0A8E8U732_9STRA (40S ribosomal protein S23 n=3 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8U732_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.960e-79
Identity = 119/145 (82.07%), Postives = 135/145 (93.10%), Query Frame = 1
Query:   76 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            MGKG PAGIRA RKLR HRR++RWA KDY KSHS++ +KANP  G++MAKGIV+EK+GIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGRRGHAVGDIPGVRFKVVKVAG +LLALYK+KKEKPR+
Sbjct:    1 MGKGLPAGIRAARKLRDHRRSQRWADKDYRKSHSLSTLKANPFAGATMAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRRGHAVGDIPGVRFKVVKVAGASLLALYKEKKEKPRA 145          
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Match: A0A8E8PJI4_9STRA (40S ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.960e-79
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 1
Query:   76 MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 510
            M KG PAG+RA RKLR HRR +RWA K YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DENDEVL+SGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:    1 MSKGLPAGMRAARKLRTHRRKQRWAQKHYNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6658.16142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM9_ECTSI1.860e-94100.00Ribosomal protein S23, component of cytosolic 80S ... [more]
A0A835Z8V8_9STRA2.350e-9093.79Putative ribosomal protein S23 n=1 Tax=Tribonema m... [more]
W7TKK2_9STRA5.550e-8487.5940s ribosomal protein s23 n=2 Tax=Monodopsidaceae ... [more]
M4BPE8_HYAAE9.080e-8388.28Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A4W5LQ08_9TELE1.600e-8189.2940S ribosomal protein S23 n=31 Tax=Eukaryota TaxID... [more]
A0A7S2WV04_9STRA1.270e-8085.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8C1Z7_THAPS1.600e-8086.62RS23, ribosomal protein 23 40S small ribosomal sub... [more]
A0A5A8EIQ0_CAFRO1.960e-7984.83Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A8E8U732_9STRA1.960e-7982.0740S ribosomal protein S23 n=3 Tax=Placidida sp. Ta... [more]
A0A8E8PJI4_9STRA1.960e-7984.8340S ribosomal protein S23 n=2 Tax=Placidida sp. Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6658contigM-pyrifera_M_contig6658:2957..11606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue1.7e-75
Seed eggNOG ortholog2880.D7FUM9
Preferred nameRPS23
KEGG koko:K02973,ko:K03124
KEGG Pathwayko03010,ko03022,ko05169,ko05203,map03010,map03022,map05169,map05203
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001666,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006606,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030490,GO:0030867,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034063,GO:0034248,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0036293,GO:0036294,GO:0042175,GO:0042221,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090304,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990145,GO:1990904,GO:2000112,GO:2000638,GO:2000640,GO:2001141
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1749@2759
Ec32 ortholog description40S ribosomal protein S23
Ec32 orthologEc-26_002100.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Exons5
Model size951
Cds size438
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.3039844-UTR-M-pyrifera_M_contig6658:2956..30231622816556.3039844-UTR-M-pyrifera_M_contig6658:2956..3023Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6658 2957..3023 +
1692278044.7636695-UTR-M-pyrifera_M_contig6658:2956..30231692278044.7636695-UTR-M-pyrifera_M_contig6658:2956..3023Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6658 2957..3023 +
1622816556.3183992-UTR-M-pyrifera_M_contig6658:4168..41761622816556.3183992-UTR-M-pyrifera_M_contig6658:4168..4176Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6658 4169..4176 +
1692278044.7777297-UTR-M-pyrifera_M_contig6658:4168..41761692278044.7777297-UTR-M-pyrifera_M_contig6658:4168..4176Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6658 4169..4176 +
1622816556.3799634-UTR-M-pyrifera_M_contig6658:11168..116061622816556.3799634-UTR-M-pyrifera_M_contig6658:11168..11606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6658 11169..11606 +
1692278044.8285475-UTR-M-pyrifera_M_contig6658:11168..116061692278044.8285475-UTR-M-pyrifera_M_contig6658:11168..11606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6658 11169..11606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.330664-CDS-M-pyrifera_M_contig6658:4176..42571622816556.330664-CDS-M-pyrifera_M_contig6658:4176..4257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 4177..4257 +
1692278044.7874663-CDS-M-pyrifera_M_contig6658:4176..42571692278044.7874663-CDS-M-pyrifera_M_contig6658:4176..4257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 4177..4257 +
1622816556.34521-CDS-M-pyrifera_M_contig6658:8590..86791622816556.34521-CDS-M-pyrifera_M_contig6658:8590..8679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 8591..8679 +
1692278044.7994444-CDS-M-pyrifera_M_contig6658:8590..86791692278044.7994444-CDS-M-pyrifera_M_contig6658:8590..8679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 8591..8679 +
1622816556.358502-CDS-M-pyrifera_M_contig6658:10199..103261622816556.358502-CDS-M-pyrifera_M_contig6658:10199..10326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 10200..10326 +
1692278044.8091245-CDS-M-pyrifera_M_contig6658:10199..103261692278044.8091245-CDS-M-pyrifera_M_contig6658:10199..10326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 10200..10326 +
1622816556.3692842-CDS-M-pyrifera_M_contig6658:11027..111681622816556.3692842-CDS-M-pyrifera_M_contig6658:11027..11168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 11028..11168 +
1692278044.8183227-CDS-M-pyrifera_M_contig6658:11027..111681692278044.8183227-CDS-M-pyrifera_M_contig6658:11027..11168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6658 11028..11168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6658.16142.1prot_M-pyrifera_M_contig6658.16142.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6658 4177..11168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6658.16142.1

>prot_M-pyrifera_M_contig6658.16142.1 ID=prot_M-pyrifera_M_contig6658.16142.1|Name=mRNA_M-pyrifera_M_contig6658.16142.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAK
GIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEND
EVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS*
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mRNA from alignment at M-pyrifera_M_contig6658:2957..11606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6658.16142.1 ID=mRNA_M-pyrifera_M_contig6658.16142.1|Name=mRNA_M-pyrifera_M_contig6658.16142.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8650bp|location=Sequence derived from alignment at M-pyrifera_M_contig6658:2957..11606+ (Macrocystis pyrifera P11B4 male)
AGCAGCGGCAGCAAGCAACCTCAAGGTCTCTAACCTGTGCCACCTGGCCA CTAGGTTAACCCTCAAGGTGAGGTGTGATCTTGGATTCTCCTGCGGTTTG GTGTCAAGATAAAAATAAATCGGCGGTCCGGAATGCTTGTGCGACATCCT TATCCATTGCACTGCTGTGGAAAGCATTTCGTTACGTAGTTCTCCATGGC TGTGCTTTTGCCCACGGTGTTGGCGAGAGCTATGGGGCGCAAAGGGCTTC TCTGCCACCAAAATGGATTGCTCCTACCGGCTTGCTGGCTTTCTGCTGGA ACCAAGCGTGTTTCTTTCGCAGGACGTGTCGTGTTAGTGTGCTGCTCGCG ATTTTTCCACCCAAGAGAGACAAAAATAGTTACTCGATTTTTTGGACTGC TGTGGCGCCGTGCCCACATGGCAACCACCGATCGAGCAGTGCAATGCCCT GGGTCCTCGCGAGTACTCGTAGCTAGCTAGCTGCCTGGGAAGTTTGGCGT ACGGCCTGCAGCAGGCCCTGTAGGTCTGAACGCTGGCGGTATCTATACAC ACCCTGCCATAGTTTGCTGGGTCCTAGTGCTTTGCCTCTCAAGATGCACC GATTGGCAAGACGCATTTGTACGACGACTGACAGCAGTACGGGCAGTATG CTGCCTTCACGAGTTAATCGTCTCCTGTGATCGCCTCCTCTCCTGCAACC GTACCCCAGAAACACCGTTTGCGACGTATTTTTTGTCCTGCTGTACGTTG CATACATACATACAAGCCAGGTACCGTTTTGTATGTACAGCAGTAGCGCG TGCAGCGGAGAGACGCCAGTTGTATTTTCTTTGACAGCTTCTATGGGAGG CCTCGTACCAATCACCAACAGACCCGATTCCATCCCCCCTCCTTCTCTTA CCCCGCCCCTTCTCCCCTACGTGTACACATTCACCATGCGGTTTCCTTTC GTGATTGCGTCGCCAATATGTACTACTACTATACTGTTCGTACACGTACA CTCACTTTTTATCTTTCTGCTCGTTGTGTGCTTCCATTTTTTTACATCGC TCTCTCTATATCTCTGTCTCCCCACCCTCTCTACAATGGCGGTAATGGCG ATGGCGGATGGTGGTTGCAAACGAATCCACAAACAAATAAACGCCTCTTT GGCGCTTTGCGACTGACTGCTTCTCTGCATAACTTGCCACACACCGGCGC GGGCGAGAGCAGTCAAAAGTATGGGCAAGGGAAAGCCGGCGGGCATCCGC GCGGGGCGCAAGCTCCGCATCCACCGCCGTAACGAACGGTGGGCGAGCAA GGTAAGCGTTTGCCACAAGTGTGCAAGTCTGATTTCTACTGGCACTACTA TCGATAGGTATCAACAGCAGAGAGTACACAGCAGTACCTGATGCCTGGTG CTCGTAGAGCCGCCTTGTGCAAAATATTATACACAAGGCCAGCCGACAGT AGACTCGGCACTATAGCGGCATCGGGCACTACTCCGCACGCTACCACACC GCTTGGGAATCCCACCTGCCCCAAGCGATGGGCATTATAGACAACCGGCG CTACAGAGGGACCACTACTGCTTGACCGGTACGAGTATACGTCGGGTACC GGGTATTCGTAGCACATACCGCACCATAAATTTATTTATCCCGGTGTGAT TCGTACCAGTATGCTACCGCATTTTGGGTGCGCCGTGCGTGCCGGCTGAG CCCTGGCGGAGCAGGTGCGCAGCTGGAGTAAAATAAGGGTCGTAAGAAAA GGGCGAGTCGCGGAGTTTGGGTGCAAGAAAACTTGTACGTCTGATTCCGG TTGTAGCACAAGACGCTTGCTAGACTCGTACCAATCATCAACGAGGAAGG TCGACACCAAGGCGGGCAGGCGCAATAAGGGTAAGGGAAAGAAGCGAAAA GAGTCAGAGCACGACGAGGACCCGTCAAGGGTCCCAGCTGGATCTCTGAC CCAGGTAGTACGGCGGCCGGCCACCGAAAGGCCCAAATGCGGCCACCCGG GCTGCCCTAAGCCCGTCGGCCACACGACGGCAAAGTGCTACCAACGCACC AGCGAGGAGAGGGTAGTTACCAAAGAACGCAGGTAGTGCGTACGGCAGCG CGCGCGATGAAAGGCCCGGATGCGTCTATTGTACGCAACAGCCCGTCTGC CACTCGACGGCACAAGTGCTATCAATAGCAGCGCATCCGCGAGTAGAAGG TGGACACCAAGGCAAGTTGTCCCCCCTCTCCTCGCGTATGCGCTGGTTGC ACTTGGCTGCCGTGTGGCCAACGGGCTTACTGCAGCCTGAGTAACCGCGT TTGGGCCTTACTGTGCGGGCACTGCCGTGCTACTTGGATGCGTACCTGCG TTTTTTCCTTGATTAGGCTCGTATCGGTTTTGGTTACAATGCAGCAGTTT ACAGTTGTAATATGTGTCCACCCAAAAGGATGGTTTCAGACTTTGGAACG AAGGTGGGAATTGCAGTGGGACAGGGGTACCCTTCTTGGGCGCCAGCATC TCCAAGGTGGATGGTGACAAGCGGGCAAAAGGCCGACGATGCACCGGTAC CATAGTGCGAAGCACGGACCGGCTGAGAGTGCCGGGACGAGGGAAACATG GTTTCCCAAAGGCTTTCCAGGTATGAGCCAGTGACTCATAGTGGGGTGAC GAAGGGAACAGACTACGGTCGAGCAGGGCAGGGCTAAGTCTCTCCTCCCA CGTAATGAGGACGGGGTGGCCTTTGCCTAGACCGCCCGCGGCATGGTCTT GGTATTCTGTTTGCCTTTGTGTGCTCTGGACTGGTCGCGATTTGTGGGGC CTACCTCCCTTCGTCCGCCTTAACATACCGGTAGTGCTGTATCCTTTTCC ATAAGGTCAATGGTAATCTGGATTGTCGGTCGATAGGTCCGGTTGGTTGA TCAGTCGTCTGGTAGGTGTGTTGAGCAGTCGTCTCATTGGTTAGTTGATC CGTGGTCCGGTCGGTCGACCAGTCTTGTGGTCGGTAGTTCGATCAGTCGT TTGGTCTATCAATATTTAGCCCGGTAGTTGAACCAGCCGCCTGGTCGGTT GATCCGTAGTCCTGTCAGTGGATCAGTCGTCTGGTCGGTCGATCGGTGGT AGTCCAGTCGATCCACCAGTTGTCTGGTTGGTTGTTCGGCAGTCCGGTCG GTCGATCGGTATCATAGCCCGTCCGATGGATCGATTGCCATGATGGCGCC CTCGGTCGATCAAGTTGATCTGTTTTGTTGATTGGTCGTTGGGTTTGCCA AGGTTCTTGCGATTAAGGCGAGCGACGGTGTGGTCGTGAATATTCCAAAG CTGCCCGAAAGTTGAGTGTTGCGTGTGGAAAATTTGAGAATACTTTCCTC AGGGTTTGATTCCGCCCCCGCCGAGCAAAGATATAGATGTCGCTTGATAG CACTATTTGCCCCGTAGCGGACAGCCGCCAAGCTAAGGACCTCCCCACAC CAAAAATGGTACCGGTGTAGTTTTTTTCGAAAGGCTTTGACGTGTCAAGA CCGCCAACGGGCATGTTTCTGCCGACCACTTGACGGCACTCTTACCCCCA TGACGGACAGCCGCCAAGGACTCCCCCACACACACTACACGTAGTAATTA TTTGCAAGGCTTGACGTGTCAAGATCGTCAAAGGGCGTATTTGGGAACTA CCGTCACCAAAACGAGCCTAACGTCTCTTACATACTTTTCGTCTTGTACA AAAAACTACCAGGTATCAATTAATTAACACGGTATAGTTCTCAAGCATAA GAGCACTCTACAGTAGATGAATCTGAAGAGAAGGTCTTGACGGGCCGAAA CTATTGTACACCGCCACCCCGACTTGTTTGCTGCCTGGAGTCGGGTGGGA GCTGGTACCTTTACAAAATCTACCAAACTTCCTCCTCTCCAGAGTAAAGG AACGATCACGGTTTGTCCATCCATCTTCCCCTGGTGACCCGCCCACCTTG ATCGCTTTTCGTGTGTTTTCTGGTATTCTACGTTATTTCGTTGTGACACT GCATTGAAATGGGAAGCGGTATGCGTGCCGCGCCCATCCTTTATTTCTTG TTCTATGGGTTATAGGAGTATGGGCCCCTCAACAAGAAACGCCTACTCTG AGCTAAGCTGGAACCTTTTTGTAGCACGAAACGCCTGCATACTCTGGGCT ACTGAACGCTTGAACCTTGTTCGGGCACCAACCTTAACCTTTGAGCATGT ACAAGTATAGGCCCACGAATAAGAAACAAGCAAATAAGAATATCAATGCG TACTTTTTGAGGAACGTGTCGAGCAAAAGGAGTTCATAGAACCTACTCGG CGACGAGCGCTACACCTAGCCCTGAAGAAGAGCTCAAGCTCGAGGGTGTT CAATTCTAGCTGGTTCTTGTCGGCGCGCGCGCCCATACTGCTGTAGGCTA CCAGCATGTTCTACGGGAGTGAGTGTAGCTCTCGTTTTCACTGCTGAGCA TGATTTTTTGTCCCAATGTTCAACACGTCGTGCAGATAGATCATGATTTA TCTGTAGATCAGGTAGATCCTGATCTATCTCTGTACGGATGATCTGGTTC CTCGACTGCCGCTATTGTGAGAAGTTGTGCAGGATCTGGATCGGTACAGT ACAGATCGAACCCAGGAAACATGTGCTAGATCATGCAGATTATTACGGCT CCCACCCCGGCAACACTTCGTAGCTACTGCTGTGGGTCATGCAAGATCAG GAACGTATATTCCCTGGAAGATCTAGATGATGATCTATCTGTCCGAGATG TGGGATGTTTTCTAACCCTTTTTTATTTTATATTTAGGTTGTAGTAGTGC GCTGCTGTTCATGATGCATGAAGCTGAGCCTAGTTCCAAGCAGTGCATCC CTCAAACGGGACTGCAGTCCTACTGTAAAGGAGACGGTTAAAAAAGATCG AAAACAACTTGAAACGGACTTATTCCCTGCGTACTATCTCGATGGAAACC CCGGAAAAGTTGCTCGTCGCCAGGCGTCGTCGGCTGGACTCCTGCCCTGT CTTGTTTCTTGTCGGGCGGGGCTGTCGCCCGTTACGTGTTGGATGGAGGG GTGTGACCCCTAATCCACGCGCGATATAGTAACGCGGCGAACGAGTTGTG TTGGCGGATCAGGCACTTCACTTTTTCGATGCTTGATGGTTGCCACCGTG GAAGGACTTTCGCCACGAAACGTTTTGCATAACCGTGTAAGGACCTCTCT CTGTCTGCATGCGTATAGCGGCGAGTGCAAAATGCCGTTGCATGCTTCAG GAAGCGACGGATTGAATGTTTGATTGTATTTATTTGGGAGATGTATGTAC AACCATTGTTTGTAGTAATTACTTTTTTTTATTTTGGATCTCGTGATTTC AGTCCCGCCGTCTGGTGGCCTGGCCATCTGCTTGAACCGCAAGGATTTTG ATGTATCGCTGTCAATTGCTCAATTTCTTCTCCCACGGCTTCGAAAATTG TGTTGGAAATGGTAAATATGTTCTTCCCTGTGCTGTACTTGTTTATGTTT CTGTTTTGTTTTATGAGAGAGTGTGGTTTCGTCGTTTTTTCTTCGTTTTT TCTTCGTTCCCCTTACCCCGCCTTCCCTCCGTGTTTCCGAACACGTTATT CTCTTGGCTGTGTGTCTGGTGACGCCTCTTCCAGGACTACAACAAGTCCC ACTCCGTCACGGCGATGAAGGCGAACCCCCTCGGTGGCTCTTCCATGGCC AAGGGCATCGTCTTGGAGAAGATGTAAGTTTTTGCCCCGTCCTCTGTCCC ATGTCCCCCCCCCGCCCTCTTGGCCGAGGCACACGCGCATTCCTTCTGTT TGTACAGGATGTTGGCGTTTCTTTTCATTTTTTCAAGAGCAGTTCAAGAA CGCACGAGCCAGCCCTTGTCCCCAAAAATTACATATTGATTGTAAACAAC GTGGCCAACGCTAGTTTAGCGTTTACTCTGTCGGCTCGCGCTCGGCATTC TCTCTGTTTTACTCCAGGGAAGGGTTGGCCAATAGACTCACGGGTAAGGA TAGCCGAACGTTGTATCGTGTTGAACCGCGTGTGCGCGATGCATGCGGTG CTTGCAGATGTGGAGTGTGAAGCCCTCATCAATTGTGTTGATGTGTTTTT TTTTTTACGTGCGCAAGGGCCTTTTGTTGGTTCGAGTTTCCAGTTGGTCG CATGGAGCTCTCTCCTCAACGGGGTTTGTACAGCTTTGAAGGCTTTCTTG CGGTCTCGAGTCGTACAGTTGAACGTCTTGAGTTGCAATGTCACGTCAGC CAGGGTGGGGGGAGGAACTTGGTCAACTTTGCAGGTGTTTGTGCAGTTTA CAGAGGCTTTGTCACGATCTCGAGTCTTATAGATGCACATCTTGAGCTGT TATCCACGTCAGGCAGGGCTGTGGTATGAACACGGTCAGCCTTGCAGGTG TTTGTACCGTTTGTGGAGGCTTTCTCGCCGTCTCGAGCCTTTCACTTTAC ACATCTTGAGCTGTCACGCCAGGCAGGACGGGGACGGGAATTTGGTCAGC TTTGCGGTCGGCATCACCTTGTTGATTCAGCCAAGCACTACCGCCTCTGC TAGCGCCATGCTCCATTAAGAATCAATTTATCGCAAGCCTCGTGGTGTAC GTTGTCATGTAGGCTTTGGCCTAGATTTCGAAAAAATGGTCGGAATTTTT CTCTAAAATCCCGAAAAATATGGATCACCGGGGATTTTGTTCGGAATGAA AACCTAGTTGTATAGTTGAGTGAGAACCTACCGGCATATGCCGTAAGAGA ACGTCAAATGTAGAAACCGCGCGCAAAAAAAACCTGCCGAGCATACTTGC GAAAACATGTTGTAGGCATCCCACTATTAATAATAGACAAGGAGACGTTA TCCGCCAGGGGCTGACGCCAACATCTCGAAACGGCTGAATAAAAAATGCA AACCGCATATGAACGTGAGAACCGCTGAGAAGCGTCTACCGGCATTACAC CCCCCCGCAAAAGTTTGTATGGAATACTCGCATGTGTCAAACGTCTAGTC GAAGCAGCACCAGGTCATCAACACAACTTCACTGGACACGCCAGCCACCC GTTGTTTAGCGGTCGTAATAACTGCGGTTTCTTCGTGTCCCACCCCTCGT TCCTTGCTTCGCGTACGCCGCCCGGCCCTGCCTTGCGCTCGCCCCCCTGC TTTGCCTTGTGCTGCCCCGTTTCTTAATCAATACCCTGTCGGCACGGAAC AACCATCACATTGACGACTTGTTGTTTTTCCCGGGTATTTCAGCGGTATC GAAGCGAAACAGCCTAACTCCGCTATCCGGAAGTGCGTGCGGGTGCAGCT CATCAAGAACGGGAAGAAGCTGGCGGCGTTCGTGCCCCGTGACGGTTGCC TCAACTTCACCGACGAGAACGTAAGTACTGACCTCGTAGTTATCTTGTTT TTTTCTCTCGTGTTTTTATATATCAGTTTGCACGAATTTCGGTTTTCGTC TTGTTGTTTGTGTTTCTGCCTTCCAGGTGTTAACTTTTGTTTTCTTTTTG TTGTTTTCTGTGTTTTGCTCAGAGCCTGTTTCGTTTTTTTTTTCGCGTTT GATGATATGCTTCGTAGCGTTAGAAAGTTGTCTTGACGAGGTGTTTGATA GAAATAGAGGCATGTGTCTTGGGGAGAAGAGCTTTGGTTGCCTCTGCATT TCCGGCCTTAGAAGCCGAAAGGGGTATGTATGTACGTACCCACCGCTGCG ATAAATACAGGTAGGCCCTAGTCGAGGGAATCAGGTGGGAGCGTGACAAG ATTGCTCTACGAAGTCGTCCGGAGTACTATGATGGGGAACCATAGTACAT AGGGCCAAATATTGTTAGTAATAATCGGGAAATATATAGTTTTTTTGTGT ACCATAGGTTCTATTTACCATGGTGCTGTTGTACGTTAATTGTGGAGTCA ATATGTACTAGTGAAACTGTCAGTGACGTCGGTTCCATACCGAACCCATG GACGGTTCCGCTTTGTTTTGTTTATCGTTTTTTTTTTCATTTTTTTCTTC TCCCGACTTATTTCTGTACACAAACGTATTCACCCGTCTGTCGCTTCGCT TTTTACTTTTGGCTTTTTCAGGACGAAGTTCTTATCTCCGGATTCGGACG CCGCGGTCACGCCGTGGGTGACATCCCCGGTGTCCGCTTCAAGGTCGTCA AGGTGGCGGGCGTAGCACTGCTCGCCCTCTACAAGGACAAGAAGGAGAAG CCGCGCTCTTAGAAAAACGCATCGCCTCTCATGCGCAAAACCTATGGGGC GGGGGTAGGTTTCGGATCAACGAGTTAACGTAGTTCAAGGCTGGGCGCGG GGGCGAGAAGAAAACAAAGGATTATTTCTTTTCCTTTTTTTTGGTGGCTT GCTTCTTTTTTGGCCTTCGCATCGAAACAAAGGATTATTTTCTTCTCCTT TTTTTTTGGTCGTTTGCTTCTTTTTGGCTTTCGCATCGCTTTCGGGTCTC CCGAATTGGGTACGGTTTGGCTTACCGTTCCGTCTTGAGTACCAGCGTAT CCCTCCCTCCCCCCCTTCCTCGTCGACGTTTCTCAAGCCTGTTGGCCGTT TCCGTCCTTCGATGGGCGTAACACGTTGCGAACGGGCTGGGGATTTTGCG GAGGCGAGGTTGTGCTGGAGATTACCGGTTGTTGTTCGCGGATAAGGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6658:2957..11606+

>mRNA_M-pyrifera_M_contig6658.16142.1 ID=mRNA_M-pyrifera_M_contig6658.16142.1|Name=mRNA_M-pyrifera_M_contig6658.16142.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig6658:2957..11606+ (Macrocystis pyrifera P11B4 male)
ATGGGCAAGGGAAAGCCGGCGGGCATCCGCGCGGGGCGCAAGCTCCGCAT
CCACCGCCGTAACGAACGGTGGGCGAGCAAGATGGGCAAGGGAAAGCCGG
CGGGCATCCGCGCGGGGCGCAAGCTCCGCATCCACCGCCGTAACGAACGG
TGGGCGAGCAAGGACTACAACAAGTCCCACTCCGTCACGGCGATGAAGGC
GAACCCCCTCGGTGGCTCTTCCATGGCCAAGGGCATCGTCTTGGAGAAGA
TGACTACAACAAGTCCCACTCCGTCACGGCGATGAAGGCGAACCCCCTCG
GTGGCTCTTCCATGGCCAAGGGCATCGTCTTGGAGAAGATCGGTATCGAA
GCGAAACAGCCTAACTCCGCTATCCGGAAGTGCGTGCGGGTGCAGCTCAT
CAAGAACGGGAAGAAGCTGGCGGCGTTCGTGCCCCGTGACGGTTGCCTCA
ACTTCACCGACGAGAACCGGTATCGAAGCGAAACAGCCTAACTCCGCTAT
CCGGAAGTGCGTGCGGGTGCAGCTCATCAAGAACGGGAAGAAGCTGGCGG
CGTTCGTGCCCCGTGACGGTTGCCTCAACTTCACCGACGAGAACGACGAA
GTTCTTATCTCCGGATTCGGACGCCGCGGTCACGCCGTGGGTGACATCCC
CGGTGTCCGCTTCAAGGTCGTCAAGGTGGCGGGCGTAGCACTGCTCGCCC
TCTACAAGGACAAGAAGGAGAAGCCGCGCTCTTAGGACGAAGTTCTTATC
TCCGGATTCGGACGCCGCGGTCACGCCGTGGGTGACATCCCCGGTGTCCG
CTTCAAGGTCGTCAAGGTGGCGGGCGTAGCACTGCTCGCCCTCTACAAGG
ACAAGAAGGAGAAGCCGCGCTCTTAG
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