mRNA_M-pyrifera_M_contig66552.16136.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66552.16136.1
Unique NamemRNA_M-pyrifera_M_contig66552.16136.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66552.16136.1 vs. uniprot
Match: A0A2E7KBT3_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KBT3_9PLAN)

HSP 1 Score: 329 bits (843), Expect = 5.420e-114
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 1 
Query:    1 MTQSDDYQNEADREEMGYHLMFQQMYPQVRNCDPRAYFRAKLTNHRKALEVLLTEEEYLEECQRIFKEIIDPDKRDLIMNLILLFFIFAGVTGIAYGFYTQNWGFICLVPSTLVSLWFLRGQRRYYYWLNSLTFHQRAEIIDYLRSSHLIDDTEQNQMRSRLESRQ 498
            MTQSDDYQNEADREEMGYHLMFQQMYPQVRNCDPRAYFRAKLTNHRKALEVLLTEEEYLEE QRIFKEIIDPDKRDLIMNLILLFFIFAGVTGIAYGFYTQNWGF+CLVPSTLVSLWFLRGQRRYYYWLNSLTFHQRAEIIDYLRSSHLIDDTEQNQMRSRLESRQ
Sbjct:    1 MTQSDDYQNEADREEMGYHLMFQQMYPQVRNCDPRAYFRAKLTNHRKALEVLLTEEEYLEERQRIFKEIIDPDKRDLIMNLILLFFIFAGVTGIAYGFYTQNWGFVCLVPSTLVSLWFLRGQRRYYYWLNSLTFHQRAEIIDYLRSSHLIDDTEQNQMRSRLESRQ 166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66552.16136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7KBT3_9PLAN5.420e-11498.80Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66552contigM-pyrifera_M_contig66552:642..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.0422113-CDS-M-pyrifera_M_contig66552:641..11421622816556.0422113-CDS-M-pyrifera_M_contig66552:641..1142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66552 642..1142 +
1692278044.6585426-CDS-M-pyrifera_M_contig66552:641..11421692278044.6585426-CDS-M-pyrifera_M_contig66552:641..1142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66552 642..1142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66552.16136.1prot_M-pyrifera_M_contig66552.16136.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66552 642..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66552.16136.1

>prot_M-pyrifera_M_contig66552.16136.1 ID=prot_M-pyrifera_M_contig66552.16136.1|Name=mRNA_M-pyrifera_M_contig66552.16136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MTQSDDYQNEADREEMGYHLMFQQMYPQVRNCDPRAYFRAKLTNHRKALE
VLLTEEEYLEECQRIFKEIIDPDKRDLIMNLILLFFIFAGVTGIAYGFYT
QNWGFICLVPSTLVSLWFLRGQRRYYYWLNSLTFHQRAEIIDYLRSSHLI
DDTEQNQMRSRLESRQ*
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mRNA from alignment at M-pyrifera_M_contig66552:642..1142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66552.16136.1 ID=mRNA_M-pyrifera_M_contig66552.16136.1|Name=mRNA_M-pyrifera_M_contig66552.16136.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig66552:642..1142+ (Macrocystis pyrifera P11B4 male)
ATGACGCAAAGTGATGATTACCAAAATGAGGCGGATAGAGAGGAAATGGG
ATATCATCTGATGTTTCAGCAGATGTATCCACAGGTCCGGAATTGTGACC
CTCGGGCATACTTTCGAGCCAAGCTCACAAATCACAGGAAAGCACTGGAA
GTTCTGCTCACGGAGGAGGAATATCTGGAAGAATGTCAGAGGATATTCAA
AGAGATCATTGATCCGGATAAACGTGATCTGATTATGAATCTGATCCTGT
TATTCTTCATTTTCGCTGGGGTAACCGGAATCGCTTATGGCTTTTATACT
CAGAATTGGGGATTTATCTGTTTGGTTCCTTCAACTCTGGTATCTCTCTG
GTTTCTTCGCGGTCAGCGCCGTTACTACTACTGGTTAAATTCACTGACGT
TTCATCAGCGTGCAGAAATTATCGACTATTTAAGGTCTTCACATCTGATT
GATGATACAGAACAGAACCAGATGCGATCCAGGCTAGAGTCACGACAGTG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66552:642..1142+

>mRNA_M-pyrifera_M_contig66552.16136.1 ID=mRNA_M-pyrifera_M_contig66552.16136.1|Name=mRNA_M-pyrifera_M_contig66552.16136.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig66552:642..1142+ (Macrocystis pyrifera P11B4 male)
ATGACGCAAAGTGATGATTACCAAAATGAGGCGGATAGAGAGGAAATGGG
ATATCATCTGATGTTTCAGCAGATGTATCCACAGGTCCGGAATTGTGACC
CTCGGGCATACTTTCGAGCCAAGCTCACAAATCACAGGAAAGCACTGGAA
GTTCTGCTCACGGAGGAGGAATATCTGGAAGAATGTCAGAGGATATTCAA
AGAGATCATTGATCCGGATAAACGTGATCTGATTATGAATCTGATCCTGT
TATTCTTCATTTTCGCTGGGGTAACCGGAATCGCTTATGGCTTTTATACT
CAGAATTGGGGATTTATCTGTTTGGTTCCTTCAACTCTGGTATCTCTCTG
GTTTCTTCGCGGTCAGCGCCGTTACTACTACTGGTTAAATTCACTGACGT
TTCATCAGCGTGCAGAAATTATCGACTATTTAAGGTCTTCACATCTGATT
GATGATACAGAACAGAACCAGATGCGATCCAGGCTAGAGTCACGACAGTG
AATGACGCAAAGTGATGATTACCAAAATGAGGCGGATAGAGAGGAAATGG
GATATCATCTGATGTTTCAGCAGATGTATCCACAGGTCCGGAATTGTGAC
CCTCGGGCATACTTTCGAGCCAAGCTCACAAATCACAGGAAAGCACTGGA
AGTTCTGCTCACGGAGGAGGAATATCTGGAAGAATGTCAGAGGATATTCA
AAGAGATCATTGATCCGGATAAACGTGATCTGATTATGAATCTGATCCTG
TTATTCTTCATTTTCGCTGGGGTAACCGGAATCGCTTATGGCTTTTATAC
TCAGAATTGGGGATTTATCTGTTTGGTTCCTTCAACTCTGGTATCTCTCT
GGTTTCTTCGCGGTCAGCGCCGTTACTACTACTGGTTAAATTCACTGACG
TTTCATCAGCGTGCAGAAATTATCGACTATTTAAGGTCTTCACATCTGAT
TGATGATACAGAACAGAACCAGATGCGATCCAGGCTAGAGTCACGACAGT
GA
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