mRNA_M-pyrifera_M_contig66527.16130.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66527.16130.1
Unique NamemRNA_M-pyrifera_M_contig66527.16130.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66527.16130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66527contigM-pyrifera_M_contig66527:206..1288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816555.6409478-CDS-M-pyrifera_M_contig66527:205..3681622816555.6409478-CDS-M-pyrifera_M_contig66527:205..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66527 206..368 +
1692278044.4248397-CDS-M-pyrifera_M_contig66527:205..3681692278044.4248397-CDS-M-pyrifera_M_contig66527:205..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66527 206..368 +
1622816555.6545234-CDS-M-pyrifera_M_contig66527:1046..12881622816555.6545234-CDS-M-pyrifera_M_contig66527:1046..1288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66527 1047..1288 +
1692278044.4359474-CDS-M-pyrifera_M_contig66527:1046..12881692278044.4359474-CDS-M-pyrifera_M_contig66527:1046..1288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66527 1047..1288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66527.16130.1prot_M-pyrifera_M_contig66527.16130.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66527 206..1288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66527.16130.1

>prot_M-pyrifera_M_contig66527.16130.1 ID=prot_M-pyrifera_M_contig66527.16130.1|Name=mRNA_M-pyrifera_M_contig66527.16130.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
WTESWSADHKRRFYVNNRDFSTQWERPDDFDATGVPFYPAWEIVKVEGEE
IYMNQPSSSSSEQSPPPPAPTPSSSDAPPPPAPASSSPSPPPPAPAPVPP
PSSSSSAPPPPAPAAAAVDVDDGENDNTTPPPPAP
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mRNA from alignment at M-pyrifera_M_contig66527:206..1288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66527.16130.1 ID=mRNA_M-pyrifera_M_contig66527.16130.1|Name=mRNA_M-pyrifera_M_contig66527.16130.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at M-pyrifera_M_contig66527:206..1288+ (Macrocystis pyrifera P11B4 male)
TGGACAGAATCGTGGTCAGCAGATCATAAAAGGCGGTTTTACGTGAACAA
TCGTGACTTTTCAACACAATGGGAACGTCCTGATGATTTTGATGCAACTG
GTGTGCCGTTCTATCCGGCGTGGGAAATTGTAAAGGTGGAAGGGGAAGAG
ATTTACATGAATCGTTTGACTGGTGAAGAAACCAAGACCAAACCAGCTGA
TTATGATGCTGAAGAGGTGGAAGGGACCATTAGTGGACCTGCACCAGCAC
CTCCTCAAGATTTGCTTGATATGTTGCGAGTATTGCAGTCTGGGATGCGT
CGATATGGTCGTAAAGCTGGATTTTTGGAAAAGAAAGGTGGAGGGAAAAC
GATTTTCGGACGTCGTGCATGGCAACAAAGATATGTGGTACTGCGAGATG
GAATGATTCAATACTTTAAGACAGAATCTGATGCACGTAAACGTGAAGCA
CGCAAAGATGTTTCAGTAGATTGTGACAACTACAATTGTGACCCTATGAT
TGATGATGAGGTTGGCTTTCGACTTGTCCCAATCCACGACAAGACAAAAG
CAGCCAAAGATGCAGATCCAAAGCATGCTCCAGATCCTGACAGATGTTTT
GCGTTCCGAGCTGCATCAAAAGAGGAAAAAATTGAGTGGGTAAATGCTCT
AATGGACTCTGAATCCCCATTCACAGTCCCTGAAGGAATCACAGAAGCAA
GGGCAAGAGTTGTATCAGCCGCAGATGCTGCTGCTGCTGCTGCTGCAGCT
ACTGCAGCTGTTGAAAGTTCTTCTTCACCACCACCACCTTCATCCTCATC
AACCTCATCTCCACCACCAGCACCTGCTCCGTCACCTCCAGAGCCTTCTT
CTTCTTCTTCAGAACAATCTCCTCCTCCACCAGCACCAACACCATCATCA
TCTGACGCTCCTCCACCTCCTGCTCCTGCATCATCAAGTCCATCACCTCC
ACCTCCAGCACCAGCACCAGTTCCACCACCATCCTCATCATCCTCCGCTC
CACCACCCCCAGCACCTGCTGCTGCTGCTGTTGATGTTGATGATGGTGAG
AATGACAACACAACTCCACCTCCTCCCGCACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66527:206..1288+

>mRNA_M-pyrifera_M_contig66527.16130.1 ID=mRNA_M-pyrifera_M_contig66527.16130.1|Name=mRNA_M-pyrifera_M_contig66527.16130.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig66527:206..1288+ (Macrocystis pyrifera P11B4 male)
TGGACAGAATCGTGGTCAGCAGATCATAAAAGGCGGTTTTACGTGAACAA
TCGTGACTTTTCAACACAATGGGAACGTCCTGATGATTTTGATGCAACTG
GTGTGCCGTTCTATCCGGCGTGGGAAATTGTAAAGGTGGAAGGGGAAGAG
ATTTACATGAATCTGGACAGAATCGTGGTCAGCAGATCATAAAAGGCGGT
TTTACGTGAACAATCGTGACTTTTCAACACAATGGGAACGTCCTGATGAT
TTTGATGCAACTGGTGTGCCGTTCTATCCGGCGTGGGAAATTGTAAAGGT
GGAAGGGGAAGAGATTTACATGAATCAGCCTTCTTCTTCTTCTTCAGAAC
AATCTCCTCCTCCACCAGCACCAACACCATCATCATCTGACGCTCCTCCA
CCTCCTGCTCCTGCATCATCAAGTCCATCACCTCCACCTCCAGCACCAGC
ACCAGTTCCACCACCATCCTCATCATCCTCCGCTCCACCACCCCCAGCAC
CTGCTGCTGCTGCTGTTGATGTTGATGATGGTGAGAATGACAACACAACT
CCACCTCCTCCCGCACCTAGCCTTCTTCTTCTTCTTCAGAACAATCTCCT
CCTCCACCAGCACCAACACCATCATCATCTGACGCTCCTCCACCTCCTGC
TCCTGCATCATCAAGTCCATCACCTCCACCTCCAGCACCAGCACCAGTTC
CACCACCATCCTCATCATCCTCCGCTCCACCACCCCCAGCACCTGCTGCT
GCTGCTGTTGATGTTGATGATGGTGAGAATGACAACACAACTCCACCTCC
TCCCGCACCT
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