mRNA_M-pyrifera_M_contig66501.16128.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66501.16128.1
Unique NamemRNA_M-pyrifera_M_contig66501.16128.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66501.16128.1 vs. uniprot
Match: A0A7S3C4S6_9EUKA (Alpha-galactosidase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C4S6_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 6.080e-9
Identity = 39/130 (30.00%), Postives = 55/130 (42.31%), Query Frame = 1 
Query:    1 WPVVGNTEAIAINQAWAGEAGRLVMASPQNVTMQVFAGRECEANHTAQLPTFTVWAKTLPEGQAAV-AINTLSAPVSLTVPFEALRLQGTVTATDVWSKQQETVQDQWRVTLP--PRGSKFVKFVPKTDA 381
            WPV+ NTE +AI+Q++ G  GRL++ S   +             H   LPT+ VWAK +  G  A+ A+N     V+L V    L     V   D+W+            T P  P    F+   P   A
Sbjct:  102 WPVIANTEVLAISQSYNGHPGRLILNSSDYLVKHCALWASGMGGHNCTLPTWQVWAKKMAAGAVAMLAVNVGDDAVALNVSLPLLGFDEKVFVRDLWAHSDNGTASGELNTGPLIPHSCVFILLTPVASA 231
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66501.16128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3C4S6_9EUKA6.080e-930.00Alpha-galactosidase n=1 Tax=Haptolina ericina TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66501contigM-pyrifera_M_contig66501:872..1267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog81824.XP_001750559.1
KEGG rclassRC00049,RC00059,RC00451
KEGG koko:K07407
KEGG ReactionR01101,R01103,R01104,R01194,R01329,R02926,R03634,R04019,R04470,R05549,R05961,R06091
KEGG Pathwayko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alpha-galactosidase
EggNOG OGsKOG2366@1,KOG2366@2759
EC3.2.1.22
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816555.5436664-CDS-M-pyrifera_M_contig66501:871..12671622816555.5436664-CDS-M-pyrifera_M_contig66501:871..1267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66501 872..1267 -
1692278044.388718-CDS-M-pyrifera_M_contig66501:871..12671692278044.388718-CDS-M-pyrifera_M_contig66501:871..1267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66501 872..1267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66501.16128.1prot_M-pyrifera_M_contig66501.16128.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66501 872..1267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66501.16128.1

>prot_M-pyrifera_M_contig66501.16128.1 ID=prot_M-pyrifera_M_contig66501.16128.1|Name=mRNA_M-pyrifera_M_contig66501.16128.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
WPVVGNTEAIAINQAWAGEAGRLVMASPQNVTMQVFAGRECEANHTAQLP
TFTVWAKTLPEGQAAVAINTLSAPVSLTVPFEALRLQGTVTATDVWSKQQ
ETVQDQWRVTLPPRGSKFVKFVPKTDAEYRR*
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mRNA from alignment at M-pyrifera_M_contig66501:872..1267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66501.16128.1 ID=mRNA_M-pyrifera_M_contig66501.16128.1|Name=mRNA_M-pyrifera_M_contig66501.16128.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig66501:872..1267- (Macrocystis pyrifera P11B4 male)
TGGCCCGTGGTAGGCAACACAGAGGCCATCGCCATCAACCAGGCCTGGGC
AGGGGAAGCCGGGAGGCTGGTGATGGCCAGTCCGCAAAACGTCACAATGC
AGGTGTTCGCAGGCAGGGAGTGTGAGGCGAACCACACTGCACAGCTCCCG
ACGTTCACGGTCTGGGCCAAGACGCTGCCCGAGGGACAGGCTGCCGTCGC
CATCAACACCCTCTCCGCCCCAGTGTCCCTCACAGTCCCCTTCGAGGCAC
TCAGACTGCAAGGAACCGTCACAGCTACCGACGTCTGGAGCAAGCAACAA
GAAACCGTCCAAGACCAGTGGCGCGTCACACTGCCCCCAAGAGGCTCAAA
GTTTGTCAAGTTTGTCCCAAAAACAGACGCAGAATACCGCAGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66501:872..1267-

>mRNA_M-pyrifera_M_contig66501.16128.1 ID=mRNA_M-pyrifera_M_contig66501.16128.1|Name=mRNA_M-pyrifera_M_contig66501.16128.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig66501:872..1267- (Macrocystis pyrifera P11B4 male)
TGGCCCGTGGTAGGCAACACAGAGGCCATCGCCATCAACCAGGCCTGGGC
AGGGGAAGCCGGGAGGCTGGTGATGGCCAGTCCGCAAAACGTCACAATGC
AGGTGTTCGCAGGCAGGGAGTGTGAGGCGAACCACACTGCACAGCTCCCG
ACGTTCACGGTCTGGGCCAAGACGCTGCCCGAGGGACAGGCTGCCGTCGC
CATCAACACCCTCTCCGCCCCAGTGTCCCTCACAGTCCCCTTCGAGGCAC
TCAGACTGCAAGGAACCGTCACAGCTACCGACGTCTGGAGCAAGCAACAA
GAAACCGTCCAAGACCAGTGGCGCGTCACACTGCCCCCAAGAGGCTCAAA
GTTTGTCAAGTTTGTCCCAAAAACAGACGCAGAATACCGCAGATGATGGC
CCGTGGTAGGCAACACAGAGGCCATCGCCATCAACCAGGCCTGGGCAGGG
GAAGCCGGGAGGCTGGTGATGGCCAGTCCGCAAAACGTCACAATGCAGGT
GTTCGCAGGCAGGGAGTGTGAGGCGAACCACACTGCACAGCTCCCGACGT
TCACGGTCTGGGCCAAGACGCTGCCCGAGGGACAGGCTGCCGTCGCCATC
AACACCCTCTCCGCCCCAGTGTCCCTCACAGTCCCCTTCGAGGCACTCAG
ACTGCAAGGAACCGTCACAGCTACCGACGTCTGGAGCAAGCAACAAGAAA
CCGTCCAAGACCAGTGGCGCGTCACACTGCCCCCAAGAGGCTCAAAGTTT
GTCAAGTTTGTCCCAAAAACAGACGCAGAATACCGCAGATGA
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