mRNA_M-pyrifera_M_contig66457.16119.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66457.16119.1
Unique NamemRNA_M-pyrifera_M_contig66457.16119.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66457.16119.1 vs. uniprot
Match: A0A7Y2GR55_9ACTN (DUF4129 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GR55_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 3.700e-18
Identity = 62/171 (36.26%), Postives = 83/171 (48.54%), Query Frame = 1 
Query:   19 RFLEWLAGLFDISAGGGQQNGSGGFLLGWILLAIAAAAAVWFLIRVMPRRRLRASAKSEPVVEQRTRHRATRKEWLKRAAEAEAARDFTGAVRARYRALIAGLADRDELAPDEARTSGEHLRSFEADGPRVERFSRATDRYERAWFGDEPVVLDDSQELAGIDHE-MVEGG 528
            R +E ++ L  + A        GG  +GWI+LA      V+FL R +PR         EP +     HR +R EWL  A +AE+A  +  AVRARYRA++AGL DR E+  D   T  E   +F     R   F  AT  Y   W+G +     DS+  A  D + M EGG
Sbjct:   36 RVIELISDLLSVVA---DSTVFGGVAIGWIILAAMVGLIVFFLYRYLPRYGSSGRRSVEPTIVVERAHR-SRDEWLAEARDAESAGRYREAVRARYRAMVAGLVDRGEIPEDPGATPNELRSAFGGSERRTAPFGSATAAYSDVWYGGDRAERADSERFATWDSDVMTEGG 202
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BLAST of mRNA_M-pyrifera_M_contig66457.16119.1 vs. uniprot
Match: A0A359F1F1_9ACTN (DUF4129 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A359F1F1_9ACTN)

HSP 1 Score: 66.2 bits (160), Expect = 4.630e-10
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 1 
Query:   13 IGRFLEWLAGLF--DISAGGGQQNGSGGFLLGWILLAIAAAAA---VWFLIRVMPR-RRLRASAKSEPVVEQRTRHRATRKEWLKRAAEAEAARDFTGAVRARYRALIAGLADRDELAPDEARTSGEHLRSFEADGPRVER-FSRATDRYERAWFG 459
            I RF++WLA       +  G QQNG    ++  +L+A+A       +W +++  PR +RL+ S   E VVE+   H     EW   A++ EA+ D+ GA+R RYR L+A L  R  +     RT+GE  +   A  P V R FS AT  +E  W+G
Sbjct:   40 IERFVDWLAERLGGQPTPDGFQQNGWLNVVIWTVLIALAIGLVSFIIWLIVKRKPRAKRLKTSP--ELVVERDRSH----SEWADEASQLEASGDWKGAIRCRYRELVAVLVQRRLVESVPGRTTGELRQDLSASHPAVAREFSEATLLFELPWYG 189
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BLAST of mRNA_M-pyrifera_M_contig66457.16119.1 vs. uniprot
Match: A0A411YIU9_9ACTN (DUF4129 domain-containing protein n=1 Tax=Egibacter rhizosphaerae TaxID=1670831 RepID=A0A411YIU9_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 3.390e-5
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1 
Query:   94 LLGWILLAIAAAAAVWFLIRVMPRRRLRASAKSEPVVEQRTRHRATRKEWLKRAAEAEAARDFTGAVRARYRALIAGLADRDELAPDEARTSGEHLRSFEADGPR-VERFSRATDRYERAWFGDEPVVLDDSQELAGIDHEM 516
            +LG ++LA     AV  L+R +  RR+RAS  +    +  T    T   W   A   E   ++  A+R  YRAL+A L   + +     RT  E+L +   D P        ATD +E AW+G +PV  DD +++   D E+
Sbjct:    1 MLGLLVLAGGIVLAVVLLVRAL--RRVRASTGTRARAD--TLEGRTAASWRSLAEAHEHDGEWRDALRCHYRALLAELVAAERVEEVPGRTPREYLAAVSEDAPAFTSPLEAATDAFEAAWYGHQPVGPDDVEDVRARDAEI 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66457.16119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y2GR55_9ACTN3.700e-1836.26DUF4129 domain-containing protein n=1 Tax=Acidimic... [more]
A0A359F1F1_9ACTN4.630e-1035.90DUF4129 domain-containing protein n=1 Tax=Acidimic... [more]
A0A411YIU9_9ACTN3.390e-531.69DUF4129 domain-containing protein n=1 Tax=Egibacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66457contigM-pyrifera_M_contig66457:742..1278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size537
Cds size537
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.6898217-CDS-M-pyrifera_M_contig66457:741..12781622816554.6898217-CDS-M-pyrifera_M_contig66457:741..1278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66457 742..1278 -
1692278043.8741398-CDS-M-pyrifera_M_contig66457:741..12781692278043.8741398-CDS-M-pyrifera_M_contig66457:741..1278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66457 742..1278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66457.16119.1prot_M-pyrifera_M_contig66457.16119.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66457 742..1278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66457.16119.1

>prot_M-pyrifera_M_contig66457.16119.1 ID=prot_M-pyrifera_M_contig66457.16119.1|Name=mRNA_M-pyrifera_M_contig66457.16119.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
VGDAIGRFLEWLAGLFDISAGGGQQNGSGGFLLGWILLAIAAAAAVWFLI
RVMPRRRLRASAKSEPVVEQRTRHRATRKEWLKRAAEAEAARDFTGAVRA
RYRALIAGLADRDELAPDEARTSGEHLRSFEADGPRVERFSRATDRYERA
WFGDEPVVLDDSQELAGIDHEMVEGGRS*
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mRNA from alignment at M-pyrifera_M_contig66457:742..1278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66457.16119.1 ID=mRNA_M-pyrifera_M_contig66457.16119.1|Name=mRNA_M-pyrifera_M_contig66457.16119.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig66457:742..1278- (Macrocystis pyrifera P11B4 male)
GTCGGCGATGCGATCGGCCGGTTCCTCGAGTGGCTTGCCGGGCTGTTCGA
CATCTCGGCCGGTGGTGGCCAACAGAACGGATCTGGCGGCTTCCTGCTCG
GCTGGATTCTTCTTGCCATCGCTGCCGCTGCTGCGGTCTGGTTCCTGATC
CGGGTGATGCCACGGCGCCGCTTGCGAGCATCGGCCAAGAGCGAACCCGT
CGTCGAACAGCGAACGAGGCACCGTGCCACGCGCAAGGAATGGCTCAAAC
GTGCAGCCGAGGCCGAGGCCGCACGCGATTTCACCGGTGCCGTTCGTGCT
CGGTACCGAGCGCTCATCGCCGGACTCGCCGATCGTGATGAACTCGCCCC
CGATGAGGCACGCACCAGCGGGGAACATCTGCGATCCTTCGAGGCCGACG
GACCGCGCGTCGAGCGCTTCTCCCGAGCCACCGACCGTTACGAGCGAGCC
TGGTTCGGCGATGAACCGGTGGTGCTCGACGATTCGCAGGAGCTTGCTGG
GATCGACCACGAGATGGTCGAGGGAGGGCGGTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66457:742..1278-

>mRNA_M-pyrifera_M_contig66457.16119.1 ID=mRNA_M-pyrifera_M_contig66457.16119.1|Name=mRNA_M-pyrifera_M_contig66457.16119.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig66457:742..1278- (Macrocystis pyrifera P11B4 male)
GTCGGCGATGCGATCGGCCGGTTCCTCGAGTGGCTTGCCGGGCTGTTCGA
CATCTCGGCCGGTGGTGGCCAACAGAACGGATCTGGCGGCTTCCTGCTCG
GCTGGATTCTTCTTGCCATCGCTGCCGCTGCTGCGGTCTGGTTCCTGATC
CGGGTGATGCCACGGCGCCGCTTGCGAGCATCGGCCAAGAGCGAACCCGT
CGTCGAACAGCGAACGAGGCACCGTGCCACGCGCAAGGAATGGCTCAAAC
GTGCAGCCGAGGCCGAGGCCGCACGCGATTTCACCGGTGCCGTTCGTGCT
CGGTACCGAGCGCTCATCGCCGGACTCGCCGATCGTGATGAACTCGCCCC
CGATGAGGCACGCACCAGCGGGGAACATCTGCGATCCTTCGAGGCCGACG
GACCGCGCGTCGAGCGCTTCTCCCGAGCCACCGACCGTTACGAGCGAGCC
TGGTTCGGCGATGAACCGGTGGTGCTCGACGATTCGCAGGAGCTTGCTGG
GATCGACCACGAGATGGTCGAGGGAGGGCGGTCGTGAGTCGGCGATGCGA
TCGGCCGGTTCCTCGAGTGGCTTGCCGGGCTGTTCGACATCTCGGCCGGT
GGTGGCCAACAGAACGGATCTGGCGGCTTCCTGCTCGGCTGGATTCTTCT
TGCCATCGCTGCCGCTGCTGCGGTCTGGTTCCTGATCCGGGTGATGCCAC
GGCGCCGCTTGCGAGCATCGGCCAAGAGCGAACCCGTCGTCGAACAGCGA
ACGAGGCACCGTGCCACGCGCAAGGAATGGCTCAAACGTGCAGCCGAGGC
CGAGGCCGCACGCGATTTCACCGGTGCCGTTCGTGCTCGGTACCGAGCGC
TCATCGCCGGACTCGCCGATCGTGATGAACTCGCCCCCGATGAGGCACGC
ACCAGCGGGGAACATCTGCGATCCTTCGAGGCCGACGGACCGCGCGTCGA
GCGCTTCTCCCGAGCCACCGACCGTTACGAGCGAGCCTGGTTCGGCGATG
AACCGGTGGTGCTCGACGATTCGCAGGAGCTTGCTGGGATCGACCACGAG
ATGGTCGAGGGAGGGCGGTCGTGA
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