mRNA_M-pyrifera_M_contig66430.16115.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66430.16115.1
Unique NamemRNA_M-pyrifera_M_contig66430.16115.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A2E5VPY1_9PLAN (Cadherin domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5VPY1_9PLAN)

HSP 1 Score: 152 bits (385), Expect = 7.970e-39
Identity = 94/230 (40.87%), Postives = 140/230 (60.87%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGANKD--GALDEGAIYVISLNTLGHAHVLSKVSSSTSS-ISLQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGGGPVLKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEAIPLSTGANFGMSIAWPGDINGDGLLNEILVGA 681
            FG SL ++GDL  +G+  D+VVGA+ D  G +  GA++V+ +NT G A   +K++S T    +L    +FG +   +G+LDGD    +L V A  D + G  RG VF+L +  DG  + ++KI S  GGGP L D D FGHSLA LGD+ GD +A++A+GA  DD GG   GA++++ +   G      K++S +     LSTG  FG S+A  GD++GD ++ ++ VGA
Sbjct:  844 FGSSLTALGDLDADGV-GDLVVGAHGDDTGRISAGAVHVLMMNTDGTAKSSTKIASDTGGGPTLDTWNYFGRSVAALGDLDGDG-VPDLAVGAERDDTGGLWRGAVFVLLMKPDGTAKSVTKIASGTGGGPALSDRDGFGHSLAGLGDLDGDGVADLAVGADGDDTGGFWRGAVHVLLMKPDGTAKSTIKIASGSGGGPSLSTGDRFGSSVAAIGDLDGDAVI-DLAVGA 1070          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A2D5AXK0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AXK0_9BACT)

HSP 1 Score: 147 bits (371), Expect = 6.310e-37
Identity = 96/236 (40.68%), Postives = 140/236 (59.32%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGANKD----GALDEGAIYVISLNTLGHAHVLSKVSSSTSSIS--LQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGGGPVLK--DDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPE-AIPLSTGANFGMSIAWPGDINGDGLLNEILVGA 681
            FG S+A++GD+ G+G+ SD+ VGA  D    GALD GAIY++ +N+ G A    K++     IS  L  G  FG +   IG+LDGD  T +L V +  D   G  RG V+IL L++DG  R   KI   LG G +L   + D FG ++  LGDI GD++ ++ +G+ YDDDGG + GA YI+ LNT G      K+S +     + L  G  FG +++  GD +GDG+ N+++VG+
Sbjct:   54 FGRSVANLGDIDGDGI-SDLAVGAQGDDDGPGALDRGAIYILLMNSNGVAKSYQKIAEGIGGISGLLDPGDQFGRSIGSIGDLDGDGIT-DLAVGSNFDDDGGTNRGAVYILFLNSDGTVRSHQKISDLLGNGTILGLGNFDEFGRAIDGLGDIDGDMVPDMVVGSSYDDDGGVNKGAAYILFLNTDGTLKAFQKISQNQGNLGMNLRGGDFFGHAVSCMGDFDGDGV-NDLIVGS 286          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A7K4P243_9ARCH (DUF2341 domain-containing protein n=1 Tax=Marine Group I thaumarchaeote TaxID=2511932 RepID=A0A7K4P243_9ARCH)

HSP 1 Score: 147 bits (370), Expect = 8.510e-37
Identity = 94/237 (39.66%), Postives = 143/237 (60.34%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGANKD--GALDEGAIYVISLNTLGHAHVLSKVSSSTSS-ISLQNGGHFGIAACGIGELDGDSETRELLVSAPLD-------SSRGERRGVVFILSLHADGETRLISKIGSSLGGGPVLKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEAIPLSTGANFGMSIAWPGDINGDGLLNEILVGA 681
            FG S+A+IGDL G+G+ +DIVVGA  D  G  + GAI+++ +N  G      +++SST +  +L N  +FG +   IG+L+GD    ++ V A  D       +S G  RG + I+ ++ DG      +I  S   GPVL + D FG S+A +GD++GD + ++A+GA  DD+GG D GA++I+ +N  G      +++SST     L+ G NFG S+A  GD+NGDG+ N+I VGA
Sbjct: 1688 FGYSVANIGDLNGDGV-NDIVVGARYDNEGGSNRGAIHIMFMNIDGSVDSTVEINSSTDNGPTLTNSDYFGFSVANIGDLNGDG-VNDIAVGAVNDDMDENDNASGGNNRGAIHIMFMNIDGSVDSTVEINDSTNNGPVLTNSDYFGSSVANIGDLNGDGVNDLAVGAHDDDEGGSDRGAIHIMFMNINGTVASTVEINSSTTNGPTLADGDNFGYSVANIGDLNGDGV-NDIAVGA 1921          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A202E203_9BACT (LamGL domain-containing protein n=1 Tax=bacterium K02(2017) TaxID=1932696 RepID=A0A202E203_9BACT)

HSP 1 Score: 139 bits (350), Expect = 3.590e-34
Identity = 90/233 (38.63%), Postives = 135/233 (57.94%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGANKD--GALDEGAIYVISLNTLGHAHVLSKVSSSTSSIS--LQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGGGPV-LKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEAIPLSTGAN-FGMSIAWPGDINGDGLLNEILVGA 681
            FGV++++IGDL G+ + +D++VGA++D  G  D GA+YV+ L + G      K+S +  S +  L N  +FGI+A  IG++D D    ++ V A  D   G  +G V+IL L  DG      KI  + G         D FG S+A +GD++GD + ++A+GA YDDDGG D GA+YII LN  G      K+S +      +    + FG+S+A   D+NGDG+ NE+ VG+
Sbjct:  436 FGVTISNIGDLDGDSI-NDLIVGAHQDDDGGADRGAVYVLFLESDGTVSSFQKISDTAGSFTAVLDNTDYFGISAASIGDIDTDG-INDIAVGAFFDDDGGTNKGAVYILFLENDGTVSSFQKISDTAGSFTASFTVTDLFGRSVASMGDVNGDSVPDIAVGAYYDDDGGTDRGAVYIIFLNNDGTVKSFQKISDTEGSFTGVLDNTDYFGVSVASIKDLNGDGI-NELAVGS 665          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A1G1ZIN4_9BACT (DUF5011 domain-containing protein n=1 Tax=Candidatus Harrisonbacteria bacterium RIFCSPHIGHO2_02_FULL_42_16 TaxID=1798404 RepID=A0A1G1ZIN4_9BACT)

HSP 1 Score: 138 bits (348), Expect = 7.330e-34
Identity = 91/234 (38.89%), Postives = 135/234 (57.69%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGA--NKDGALDEGAIYVISLNTLGHAHVLSKVSSSTSS--ISLQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGG-GPVLKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPE-AIPLSTGANFGMSIAWPGDINGDGLLNEILVGAP 684
            FG S+A+IGDL G+G+ +DI VGA  + DG  D GA+Y++ +N  G      K+SS+     +++     FG     +G+LDGD  T +L+V A  D       G  +IL ++ DG  +   KI S+ G  G  L   D FG+S+A LGD+ GD + ++ +GA  D+DG  D GA+YI+ +N  G      K+SS+     + + TG  FG+SIA  GD++GDG+  +I VGAP
Sbjct: 1067 FGQSIANIGDLDGDGV-TDIAVGAFVDDDGNTDGGAVYILFMNPDGTVKSNQKISSTAGGLGVTMDTDDQFGQDIASLGDLDGDGVT-DLVVGAHQDDDGNTDGGAAYILFMNPDGTVKSNQKISSTAGNFGTTLVATDSFGYSVASLGDLDGDSVKDIVVGARLDNDGNTDGGAVYILFMNPNGTVKSKQKISSTAGGLGVTMDTGDQFGVSIASVGDLDGDGIT-DIAVGAP 1297          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A7C9TST9_9CYAN (Uncharacterized protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TST9_9CYAN)

HSP 1 Score: 138 bits (347), Expect = 9.710e-34
Identity = 87/230 (37.83%), Postives = 132/230 (57.39%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGA--NKDGALDEGAIYVISLNTLGHAHVLSKVSSSTSSI-SLQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGGGPVLKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEAIPLSTGANFGMSIAWPGDINGDGLLNEILVGA 681
            FG S+A IGDL  + +  D+ VG+  N  G  D GA+YV+ +N  G      K++ +T  + +L N   FGI+   IG+L+ D    +L V A LD + G  RG  ++L ++A+G      KI  S GG   L D DRFG S+A +GD+  D + ++A+GA +DD GG D GA+Y++ +N  G      K++ +T     L+ G  FG+S+A  GD+N DG+  ++ VGA
Sbjct:   94 FGASVAGIGDLNSDSIP-DLAVGSVHNDTGGTDRGAVYVLFMNADGTVASSQKIAHNTGGLGTLANIDEFGISVAAIGDLNSDG-ILDLAVGARLDDTGGTDRGAAYVLFMNANGTVASSQKIAHSTGGFGTLADGDRFGRSVAAIGDLDSDGITDLAVGARFDDTGGTDRGAVYVLLMNADGTVAGEQKIADNTGGFGILTDGDEFGISLAAIGDLNSDGIP-DLAVGA 320          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A2E0QW77_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QW77_9BACT)

HSP 1 Score: 137 bits (346), Expect = 1.210e-33
Identity = 90/228 (39.47%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGANKDGALDEGAIYVISLNTLGHAHVLSKVSSSTSSI-SLQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGGGPVLKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEAIPLSTGANFGMSIAWPGDINGDGLLNEILVGA 681
            FG S  +IGDL G+G+  ++ VGA  D     GA+Y++ L   G     +K++S TS + +L NG  FG+++  +G+ +GD    ++ V AP D + G  RG ++ILSL+ +G  +   KI  + GG   L D D FG+S A LGD+ GD ++++AIGA  +D GG   GA++I  LN  G      K++ +T     L+ G NFG S A  GD+NGDG+  E+ VGA
Sbjct:   57 FGRSTTNIGDLNGDGIP-ELAVGAFND--TSGGALYILFLKADGTVKSQTKIASDTSGLGTLANGDSFGMSSAALGDFNGDG-IPDIAVGAPGDDTGGSGRGAIYILSLNTNGTVKSQEKIADNTGGFGTLVDGDSFGNSCASLGDLDGDGISDLAIGANVEDTGGSGRGAVFIAFLNADGTVKSQTKLAHNTNGLGSLADGDNFGFSCANLGDLNGDGIP-ELGVGA 279          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A2E0QW63_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QW63_9BACT)

HSP 1 Score: 137 bits (345), Expect = 1.640e-33
Identity = 88/230 (38.26%), Postives = 136/230 (59.13%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGANKD--GALDEGAIYVISLNTLGHAHVLSKVSSSTSSIS-LQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGGGPVLKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEAIPLSTGANFGMSIAWPGDINGDGLLNEILVGA 681
            FG S  ++GDL G+G+  ++VVGA  D  G  + GA+Y++ L+  G     +K++ +T   S L N   FG +   +G+LDGD    EL+V A  D + G+ RG + IL L+ +G  +  +KI  + GG   L D D+FG S A LGD+ GD ++E+ +GA  DD GG + GA+YI+ L+  G      K++++T E   L+    FG S   PGD++GDG+  +++VGA
Sbjct:   50 FGTSCTTLGDLDGDGIP-ELVVGATGDNTGGSNRGALYILFLDRNGSVKSQTKIADNTGGFSTLANFDEFGSSCTSLGDLDGDG-IPELVVGAIGDDTGGDSRGAIHILFLNRNGSVKSQTKIADNTGGFGTLADADKFGISCAALGDLDGDGVSELVVGASDDDTGGSNRGALYILFLDRNGSVKSQTKIANNTGEFGTLTNADFFGTSCTTPGDLDGDGIP-DLVVGA 276          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A518BKI9_9BACT (FG-GAP repeat protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BKI9_9BACT)

HSP 1 Score: 134 bits (336), Expect = 1.240e-32
Identity = 89/224 (39.73%), Postives = 130/224 (58.04%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGANK--DGALDEGAIYVISLNTLGHAHVLSKVSSSTSSI--SLQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGG-GPVLKDDDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEA-IPLSTGANFGMSIAWPGDINGDG 654
            FG S+A +GDL G+G   D+ VGA +   G +D G ++++ L+  G      ++ S       SL +G  FG A   +G+LDGD    +L V A  DS  G + G V+IL L  DG  R   KI ++ GG GP L   DRFG ++A +GD+ GD +AE+A+GAPYD DGG  +GA++I+ L   G     +K+S+++  A   L  G +F  S+A  GD++GDG
Sbjct:   67 FGRSVAHLGDLDGDGF-GDLAVGAVRADTGGIDRGVVWILFLDGAGGVRASVEIGSGVGGFAGSLADGDRFGSALANLGDLDGDGVC-DLAVGARFDSDGGAKSGAVWILFLRPDGTVRAQQKISATQGGLGPGLDPGDRFGAAVASIGDLDGDGVAELAVGAPYDGDGGARSGAIWILHLTPGGMVAGRSKLSATSGWAGSGLDPGDSFARSLAALGDLDGDG 288          
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Match: A0A7Y3DEY5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3DEY5_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 2.030e-32
Identity = 92/233 (39.48%), Postives = 133/233 (57.08%), Query Frame = 1
Query:    1 FGVSLASIGDLTGNGMESDIVVGA--NKDGALDEGAIYVISLNTLGHAHVLSKVSSSTSSIS--LQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERRGVVFILSLHADGETRLISKIGSSLGGGPVLKD-DDRFGHSLAYLGDISGDLLAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPE-AIPLSTGANFGMSIAWPGDINGDGLLNEILVGA 681
            FG S+ASIGD+ G+G+ +D+ VGA  + DG  D GA+YV+ +N  G      K+S +   ++  L N   FG+   GIG+LDGD    +L V    D   G  +G ++IL L+ DG  +    I  + GG     D +DRFG S+A +GD+ GD L ++ +GA  DDDGG D GA+Y++ LN  G      K+S ++      L T   FG+ +A  GD++GDGL  +I VGA
Sbjct:  717 FGRSVASIGDVDGDGI-TDLAVGAPFDDDGGSDRGAVYVLFINANGTVKSEQKISDTVGGLATALANLDEFGMGVAGIGDLDGDL-IPDLAVGVHQDDDGGGNQGAIYILFLNPDGTVKGEQVISETQGGLAATIDINDRFGSSVAAIGDLDGDGLNDIVVGAKDDDDGGVDQGAVYVLFLNADGTVKAEQKISETSGGLGAVLDTTDAFGIDVAGLGDLDGDGL-GDIAVGA 946          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66430.16115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5VPY1_9PLAN7.970e-3940.87Cadherin domain-containing protein n=1 Tax=Plancto... [more]
A0A2D5AXK0_9BACT6.310e-3740.68Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7K4P243_9ARCH8.510e-3739.66DUF2341 domain-containing protein n=1 Tax=Marine G... [more]
A0A202E203_9BACT3.590e-3438.63LamGL domain-containing protein n=1 Tax=bacterium ... [more]
A0A1G1ZIN4_9BACT7.330e-3438.89DUF5011 domain-containing protein n=1 Tax=Candidat... [more]
A0A7C9TST9_9CYAN9.710e-3437.83Uncharacterized protein n=1 Tax=Oscillatoria sp. S... [more]
A0A2E0QW77_9BACT1.210e-3339.47Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A2E0QW63_9BACT1.640e-3338.26Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A518BKI9_9BACT1.240e-3239.73FG-GAP repeat protein n=1 Tax=Planctomycetes bacte... [more]
A0A7Y3DEY5_9ACTN2.030e-3239.48Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66430contigM-pyrifera_M_contig66430:435..1118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score120.9
Seed ortholog evalue7.5e-25
Seed eggNOG ortholog382464.ABSI01000016_gene740
KEGG koko:K13735
KEGG Pathwayko05100,map05100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein involved in outer membrane biogenesis
EggNOG OGsCOG2982@1,COG2982@2,COG4932@1,COG4932@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.5738828-CDS-M-pyrifera_M_contig66430:434..11181622816554.5738828-CDS-M-pyrifera_M_contig66430:434..1118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66430 435..1118 -
1692278043.8229423-CDS-M-pyrifera_M_contig66430:434..11181692278043.8229423-CDS-M-pyrifera_M_contig66430:434..1118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66430 435..1118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66430.16115.1prot_M-pyrifera_M_contig66430.16115.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66430 435..1118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66430.16115.1

>prot_M-pyrifera_M_contig66430.16115.1 ID=prot_M-pyrifera_M_contig66430.16115.1|Name=mRNA_M-pyrifera_M_contig66430.16115.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
FGVSLASIGDLTGNGMESDIVVGANKDGALDEGAIYVISLNTLGHAHVLS
KVSSSTSSISLQNGGHFGIAACGIGELDGDSETRELLVSAPLDSSRGERR
GVVFILSLHADGETRLISKIGSSLGGGPVLKDDDRFGHSLAYLGDISGDL
LAEVAIGAPYDDDGGPDAGAMYIISLNTVGEGIVLAKVSSSTPEAIPLST
GANFGMSIAWPGDINGDGLLNEILVGAP
back to top

mRNA from alignment at M-pyrifera_M_contig66430:435..1118-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66430.16115.1 ID=mRNA_M-pyrifera_M_contig66430.16115.1|Name=mRNA_M-pyrifera_M_contig66430.16115.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig66430:435..1118- (Macrocystis pyrifera P11B4 male)
TTTGGGGTATCGCTTGCTTCCATTGGCGATCTCACTGGGAACGGCATGGA GTCTGACATTGTAGTTGGGGCAAATAAAGATGGCGCGTTAGACGAAGGAG CAATTTATGTCATATCATTGAACACTCTCGGCCATGCTCATGTGTTGTCC AAAGTTTCGTCCAGCACTTCGTCGATTTCATTACAAAATGGTGGGCATTT CGGCATTGCAGCTTGTGGTATCGGTGAATTGGATGGTGATTCTGAAACAA GGGAGTTGCTTGTTTCCGCTCCTCTTGACAGCTCAAGAGGAGAGCGTCGT GGCGTTGTATTCATTTTGTCACTACATGCTGATGGAGAGACGAGGTTGAT TTCGAAGATTGGGTCATCACTTGGTGGGGGACCTGTGTTGAAGGATGATG ATCGATTTGGCCATTCGCTTGCATATTTAGGTGATATCAGTGGAGACTTA CTTGCAGAAGTTGCTATAGGTGCTCCTTATGATGACGATGGAGGTCCTGA CGCTGGAGCGATGTACATAATATCGTTGAATACTGTTGGGGAGGGGATAG TTTTGGCAAAGGTATCATCCTCCACTCCCGAAGCAATCCCTCTTAGTACT GGTGCCAACTTTGGGATGTCAATTGCGTGGCCTGGTGATATAAATGGGGA CGGTCTCTTGAATGAAATCCTTGTTGGTGCTCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66430:435..1118-

>mRNA_M-pyrifera_M_contig66430.16115.1 ID=mRNA_M-pyrifera_M_contig66430.16115.1|Name=mRNA_M-pyrifera_M_contig66430.16115.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig66430:435..1118- (Macrocystis pyrifera P11B4 male)
TTTGGGGTATCGCTTGCTTCCATTGGCGATCTCACTGGGAACGGCATGGA
GTCTGACATTGTAGTTGGGGCAAATAAAGATGGCGCGTTAGACGAAGGAG
CAATTTATGTCATATCATTGAACACTCTCGGCCATGCTCATGTGTTGTCC
AAAGTTTCGTCCAGCACTTCGTCGATTTCATTACAAAATGGTGGGCATTT
CGGCATTGCAGCTTGTGGTATCGGTGAATTGGATGGTGATTCTGAAACAA
GGGAGTTGCTTGTTTCCGCTCCTCTTGACAGCTCAAGAGGAGAGCGTCGT
GGCGTTGTATTCATTTTGTCACTACATGCTGATGGAGAGACGAGGTTGAT
TTCGAAGATTGGGTCATCACTTGGTGGGGGACCTGTGTTGAAGGATGATG
ATCGATTTGGCCATTCGCTTGCATATTTAGGTGATATCAGTGGAGACTTA
CTTGCAGAAGTTGCTATAGGTGCTCCTTATGATGACGATGGAGGTCCTGA
CGCTGGAGCGATGTACATAATATCGTTGAATACTGTTGGGGAGGGGATAG
TTTTGGCAAAGGTATCATCCTCCACTCCCGAAGCAATCCCTCTTAGTACT
GGTGCCAACTTTGGGATGTCAATTGCGTGGCCTGGTGATATAAATGGGGA
CGGTCTCTTGAATGAAATCCTTGTTGGTGCTCCCTTTGGGGTATCGCTTG
CTTCCATTGGCGATCTCACTGGGAACGGCATGGAGTCTGACATTGTAGTT
GGGGCAAATAAAGATGGCGCGTTAGACGAAGGAGCAATTTATGTCATATC
ATTGAACACTCTCGGCCATGCTCATGTGTTGTCCAAAGTTTCGTCCAGCA
CTTCGTCGATTTCATTACAAAATGGTGGGCATTTCGGCATTGCAGCTTGT
GGTATCGGTGAATTGGATGGTGATTCTGAAACAAGGGAGTTGCTTGTTTC
CGCTCCTCTTGACAGCTCAAGAGGAGAGCGTCGTGGCGTTGTATTCATTT
TGTCACTACATGCTGATGGAGAGACGAGGTTGATTTCGAAGATTGGGTCA
TCACTTGGTGGGGGACCTGTGTTGAAGGATGATGATCGATTTGGCCATTC
GCTTGCATATTTAGGTGATATCAGTGGAGACTTACTTGCAGAAGTTGCTA
TAGGTGCTCCTTATGATGACGATGGAGGTCCTGACGCTGGAGCGATGTAC
ATAATATCGTTGAATACTGTTGGGGAGGGGATAGTTTTGGCAAAGGTATC
ATCCTCCACTCCCGAAGCAATCCCTCTTAGTACTGGTGCCAACTTTGGGA
TGTCAATTGCGTGGCCTGGTGATATAAATGGGGACGGTCTCTTGAATGAA
ATCCTTGTTGGTGCTCCC
back to top