mRNA_M-pyrifera_M_contig6642.16111.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6642.16111.1
Unique NamemRNA_M-pyrifera_M_contig6642.16111.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6642.16111.1 vs. uniprot
Match: A0A6H5KCZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-8
Identity = 66/181 (36.46%), Postives = 86/181 (47.51%), Query Frame = 1 
Query:   13 RARRLAQREEEEMNACTFQPSLPRR----PANASMVARTIGS------------------FSSETLIDGGGGGVXXXXRLGG-------------------AGRHHASAPRSGRVNGAASSSCQS---------------GEAVGRRLFEESKRLRERRFEGEERKRMTQEEAFARTCTFE 387
            RAR+LAQREE+E+  CTFQP++P R    P++ + VA  IG+                    + ++ D GGG  XXXX                       AG   A  PRS  V+    SS  S               G  V +RLF+E++RL ERRFEG+ERK M  EE +ARTCTF+
Sbjct:  273 RARKLAQREEQELKDCTFQPNVPPRGALVPSSVTRVAEPIGNGHDCVGTSSSCKPVENDDVGNGSVGDAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEGTAVGPRS--VDKETRSSVSSRGVAVSPPSQGRGCPGNNVMQRLFDETRRLDERRFEGQERKNMAAEEEYARTCTFQ 451
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BLAST of mRNA_M-pyrifera_M_contig6642.16111.1 vs. uniprot
Match: D7G313_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G313_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-7
Identity = 64/179 (35.75%), Postives = 83/179 (46.37%), Query Frame = 1 
Query:   13 RARRLAQREEEEMNACTFQPSLPRRPA----NASMVARTIG---------------------------SFSSETLIDGGG-----GGVXXXXRLGGA----GRHHASAPRSGRVNGAASSSCQSGEAVG--------------RRLFEESKRLRERRFEGEERKRMTQEEAFARTCTFE 387
            RAR+LAQREE+E+  CTFQP++P R A    + +  A  IG                           +   +  +D GG     GG XXXX         G   A+ PRS       + SC S  AV               +RLF+E++RL ERRFEG+ERK M  EE +ARTCTF+
Sbjct:  271 RARKLAQREEQELRDCTFQPNVPLRGALVSGSVTRAAEPIGHGHDCVGRSSSCKPVENDDEGNGSGGNACGGDVHVDAGGTCGVNGGXXXXXXXXXXXXXXGEGTAAGPRSVEKE---TRSCMSSRAVSSPSQGRGCPGNNVVQRLFDETRRLDERRFEGQERKNMAAEEEYARTCTFQ 446
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6642.16111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCZ8_9PHAE1.620e-836.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G313_ECTSI1.470e-735.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6642contigM-pyrifera_M_contig6642:259..645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004110.1
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.3691568-CDS-M-pyrifera_M_contig6642:258..6451622816554.3691568-CDS-M-pyrifera_M_contig6642:258..645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6642 259..645 +
1692278043.7238772-CDS-M-pyrifera_M_contig6642:258..6451692278043.7238772-CDS-M-pyrifera_M_contig6642:258..645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6642 259..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6642.16111.1prot_M-pyrifera_M_contig6642.16111.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6642 259..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6642.16111.1

>prot_M-pyrifera_M_contig6642.16111.1 ID=prot_M-pyrifera_M_contig6642.16111.1|Name=mRNA_M-pyrifera_M_contig6642.16111.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MTTRRARRLAQREEEEMNACTFQPSLPRRPANASMVARTIGSFSSETLID
GGGGGVGGGARLGGAGRHHASAPRSGRVNGAASSSCQSGEAVGRRLFEES
KRLRERRFEGEERKRMTQEEAFARTCTFE
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mRNA from alignment at M-pyrifera_M_contig6642:259..645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6642.16111.1 ID=mRNA_M-pyrifera_M_contig6642.16111.1|Name=mRNA_M-pyrifera_M_contig6642.16111.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig6642:259..645+ (Macrocystis pyrifera P11B4 male)
ATGACAACGAGAAGGGCTCGAAGGTTGGCTCAGCGGGAAGAGGAGGAGAT
GAATGCGTGCACGTTTCAGCCAAGCTTACCCCGGCGACCCGCGAATGCCT
CCATGGTGGCGCGTACAATTGGGAGTTTTTCGTCGGAGACGTTAATAGAC
GGCGGTGGCGGCGGCGTAGGAGGAGGCGCACGCCTGGGTGGTGCTGGGAG
GCATCACGCGTCGGCTCCAAGGTCGGGCAGGGTAAACGGGGCAGCTAGTT
CTTCTTGCCAGAGCGGCGAGGCGGTGGGCAGGCGGCTTTTCGAGGAGAGC
AAGCGATTGCGCGAAAGACGGTTTGAGGGGGAAGAGCGAAAGAGGATGAC
GCAGGAGGAGGCATTCGCGCGAACATGTACTTTTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6642:259..645+

>mRNA_M-pyrifera_M_contig6642.16111.1 ID=mRNA_M-pyrifera_M_contig6642.16111.1|Name=mRNA_M-pyrifera_M_contig6642.16111.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig6642:259..645+ (Macrocystis pyrifera P11B4 male)
ATGACAACGAGAAGGGCTCGAAGGTTGGCTCAGCGGGAAGAGGAGGAGAT
GAATGCGTGCACGTTTCAGCCAAGCTTACCCCGGCGACCCGCGAATGCCT
CCATGGTGGCGCGTACAATTGGGAGTTTTTCGTCGGAGACGTTAATAGAC
GGCGGTGGCGGCGGCGTAGGAGGAGGCGCACGCCTGGGTGGTGCTGGGAG
GCATCACGCGTCGGCTCCAAGGTCGGGCAGGGTAAACGGGGCAGCTAGTT
CTTCTTGCCAGAGCGGCGAGGCGGTGGGCAGGCGGCTTTTCGAGGAGAGC
AAGCGATTGCGCGAAAGACGGTTTGAGGGGGAAGAGCGAAAGAGGATGAC
GCAGGAGGAGGCATTCGCGCGAACATGTACTTTTGAAATGACAACGAGAA
GGGCTCGAAGGTTGGCTCAGCGGGAAGAGGAGGAGATGAATGCGTGCACG
TTTCAGCCAAGCTTACCCCGGCGACCCGCGAATGCCTCCATGGTGGCGCG
TACAATTGGGAGTTTTTCGTCGGAGACGTTAATAGACGGCGGTGGCGGCG
GCGTAGGAGGAGGCGCACGCCTGGGTGGTGCTGGGAGGCATCACGCGTCG
GCTCCAAGGTCGGGCAGGGTAAACGGGGCAGCTAGTTCTTCTTGCCAGAG
CGGCGAGGCGGTGGGCAGGCGGCTTTTCGAGGAGAGCAAGCGATTGCGCG
AAAGACGGTTTGAGGGGGAAGAGCGAAAGAGGATGACGCAGGAGGAGGCA
TTCGCGCGAACATGTACTTTTGAA
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