mRNA_M-pyrifera_M_contig66404.16110.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66404.16110.1
Unique NamemRNA_M-pyrifera_M_contig66404.16110.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A7S0PEN5_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PEN5_CAFRO)

HSP 1 Score: 207 bits (526), Expect = 3.420e-59
Identity = 115/232 (49.57%), Postives = 151/232 (65.09%), Query Frame = 1
Query:   67 EGGERRFAVLGLASRRAKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAE----------EQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEEGAWRAAKRDKEVDSVL 732
            E  +R   +  LASRRAK QAD V+  LLP  V ++L  +  +PFE+HP  V++++ADLVGFTALSS+     VM +LN LYS FD LV     L+K+DTIGDAYVI GGL++  +          +     LVE++F VA  MRE    +  A G DI IRIGIH+GPVATGI+GTLRPR+HVFGPT+LEAE MES G R  IQVS+  +R+Y    +   +R +  ++V+
Sbjct:  366 ESQDRHALLQRLASRRAKTQADGVLEQLLPTHVNEKLRRNEPVPFEIHPNDVVMLWADLVGFTALSSSLKPHQVMAILNALYSRFDALV-ERAHLWKVDTIGDAYVIIGGLVDSHQLRPGEAPPRSDMPGPELVERLFGVATSMREQVRAVAQATGQDIGIRIGIHSGPVATGIIGTLRPRWHVFGPTVLEAEHMESEGRRSWIQVSEAAFRLYNMRGFSLVERVRHPEAVV 596          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A5A8C5F5_CAFRO (Guanylate cyclase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5F5_CAFRO)

HSP 1 Score: 207 bits (526), Expect = 3.650e-57
Identity = 115/232 (49.57%), Postives = 151/232 (65.09%), Query Frame = 1
Query:   67 EGGERRFAVLGLASRRAKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAE----------EQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEEGAWRAAKRDKEVDSVL 732
            E  +R   +  LASRRAK QAD V+  LLP  V ++L  +  +PFE+HP  V++++ADLVGFTALSS+     VM +LN LYS FD LV     L+K+DTIGDAYVI GGL++  +          +     LVE++F VA  MRE    +  A G DI IRIGIH+GPVATGI+GTLRPR+HVFGPT+LEAE MES G R  IQVS+  +R+Y    +   +R +  ++V+
Sbjct: 1321 ESQDRHALLQRLASRRAKTQADGVLEQLLPTHVNEKLRRNEPVPFEIHPNDVVMLWADLVGFTALSSSLKPHQVMAILNALYSRFDALV-ERAHLWKVDTIGDAYVIIGGLVDSHQLRPGEAPPRSDMPGPELVERLFGVATSMREQVRAVAQATGQDIGIRIGIHSGPVATGIIGTLRPRWHVFGPTVLEAEHMESEGRRSWIQVSEAAFRLYNMRGFSLVERVRHPEAVV 1551          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A5A8CYR3_CAFRO (Guanylate cyclase domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYR3_CAFRO)

HSP 1 Score: 207 bits (526), Expect = 3.780e-57
Identity = 115/232 (49.57%), Postives = 151/232 (65.09%), Query Frame = 1
Query:   67 EGGERRFAVLGLASRRAKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAE----------EQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEEGAWRAAKRDKEVDSVL 732
            E  +R   +  LASRRAK QAD V+  LLP  V ++L  +  +PFE+HP  V++++ADLVGFTALSS+     VM +LN LYS FD LV     L+K+DTIGDAYVI GGL++  +          +     LVE++F VA  MRE    +  A G DI IRIGIH+GPVATGI+GTLRPR+HVFGPT+LEAE MES G R  IQVS+  +R+Y    +   +R +  ++V+
Sbjct: 2296 ESQDRHALLQRLASRRAKTQADGVLEQLLPTHVNEKLRRNEPVPFEIHPNDVVMLWADLVGFTALSSSLKPHQVMAILNALYSRFDALV-ERAHLWKVDTIGDAYVIIGGLVDSHQLRPGEAPPRSDMPGPELVERLFGVATSMREQVRAVAQATGQDIGIRIGIHSGPVATGIIGTLRPRWHVFGPTVLEAEHMESEGRRSWIQVSEAAFRLYNMRGFSLVERVRHPEAVV 2526          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A5A8C5V9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5V9_CAFRO)

HSP 1 Score: 207 bits (526), Expect = 3.890e-57
Identity = 115/232 (49.57%), Postives = 151/232 (65.09%), Query Frame = 1
Query:   67 EGGERRFAVLGLASRRAKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAE----------EQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEEGAWRAAKRDKEVDSVL 732
            E  +R   +  LASRRAK QAD V+  LLP  V ++L  +  +PFE+HP  V++++ADLVGFTALSS+     VM +LN LYS FD LV     L+K+DTIGDAYVI GGL++  +          +     LVE++F VA  MRE    +  A G DI IRIGIH+GPVATGI+GTLRPR+HVFGPT+LEAE MES G R  IQVS+  +R+Y    +   +R +  ++V+
Sbjct: 4357 ESQDRHALLQRLASRRAKTQADGVLEQLLPTHVNEKLRRNEPVPFEIHPNDVVMLWADLVGFTALSSSLKPHQVMAILNALYSRFDALV-ERAHLWKVDTIGDAYVIIGGLVDSHQLRPGEAPPRSDMPGPELVERLFGVATSMREQVRAVAQATGQDIGIRIGIHSGPVATGIIGTLRPRWHVFGPTVLEAEHMESEGRRSWIQVSEAAFRLYNMRGFSLVERVRHPEAVV 4587          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A812P1B7_9DINO (Npr2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812P1B7_9DINO)

HSP 1 Score: 175 bits (444), Expect = 1.600e-48
Identity = 105/221 (47.51%), Postives = 145/221 (65.61%), Query Frame = 1
Query:   79 RRFAVLGLASRRAKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAEEQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEEGAWRAAKRDKEVDSVLNLG 741
            RR  +L +AS RAK QAD VM  LLP SV   L  + SIPF + P   +I++ADLVGFTALS++  S  V++LL+ +++  D LV +S GL+KLDTIGDAYV C G  E A +     LVEK F +A+ M++  EK     G  + +R+GIHAGPVATGI+GTLRPR++VFG T+LEAE ME++G  G++QVS     +Y +  +   +R+    ++   G
Sbjct:  204 RRAMLLVMASHRAKRQADSVMGQLLPASVNDALNRNESIPFRMLPFDAVILWADLVGFTALSASMDSMAVLRLLHTIFAQCDALVEAS-GLWKLDTIGDAYV-CVGFGEAAGQGP--ALVEKQFALALAMQDIVEKAGG--GCGLGVRVGIHAGPVATGIIGTLRPRFYVFGRTVLEAEHMEASGATGRVQVSPAAASLYFQRTYGLQQREGAPAALFGEG 418          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A842PZS8_9ARCH (Adenylate/guanylate cyclase domain-containing protein n=1 Tax=Nitrososphaera sp. TaxID=1971748 RepID=A0A842PZS8_9ARCH)

HSP 1 Score: 124 bits (311), Expect = 3.410e-31
Identity = 71/194 (36.60%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  103 ASRRAKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAEEQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEE 684
            A R  + ++D+++ ++LP ++A+RL+ D SI  +     V ++FAD+VGFT +SS     +++ LLNE++STFD L     GL K+ TIGDAY++ GGL     +  +A     + ++A+ M++A     N    D  IRIGI++GPV  G++G  +  Y ++G T+  A  MES G+ G IQV++  ++  +E
Sbjct:    1 ALRLEQEKSDRLLLNILPQAIAERLKQDQSIIADTFAE-VTVLFADIVGFTQISSQISPQELVSLLNEIFSTFDRLA-EKHGLEKIKTIGDAYMVVGGLPMPRSDHAEA-----IAEMALDMQQAIADFSNTHTQDFRIRIGINSGPVVAGVIGIKKFIYDLWGDTVNTASRMESHGKPGCIQVTEATYQQLQE 187          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A183CXW0_9BILA (Guanylate cyclase domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183CXW0_9BILA)

HSP 1 Score: 124 bits (310), Expect = 1.160e-30
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 1
Query:  115 AKFQADKVMRSLLPPSVAKRLEADLSIP---FEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAEEQTQAGLVEKVFKVAVGMREATEKMRNAQGVD-IAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVS 657
            A  +ADK++  LLPP VA  L+   S+P   FE+      ++F+D+VGFT + S     +V+ +LN LY  FDE + +  G YK++TIGDAY++  G+     E+     V+ +  VA+ MRE  +  R     + +  R G H GPVA G++G   PRY +FG T+ EA  MESTG  GKIQ+S
Sbjct:   26 ANIRADKLLSQLLPPYVANELKLGRSVPPRLFEM----ATVLFSDIVGFTTICSASTPLEVVTMLNGLYKGFDECI-TRYGAYKVETIGDAYMVVSGI----PEENGTKHVQCIADVALDMREYLQDYRVPHRPEKLQCRWGFHTGPVAAGVVGLTAPRYCLFGDTVNEASRMESTGLPGKIQIS 201          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A3P7DJV1_WUCBA (Guanylate cyclase domain-containing protein n=2 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7DJV1_WUCBA)

HSP 1 Score: 123 bits (308), Expect = 1.510e-30
Identity = 70/189 (37.04%), Postives = 114/189 (60.32%), Query Frame = 1
Query:  115 AKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAEEQTQAGLVEKVFKVAVGMREATEKMRNAQGVD--IAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRM 675
            A+ QAD+++ S+LP S+A  L+    +P +++P    ++F+D+ GFT LSS      ++K LN+L+S FD+++ S    YK++TIGDAY+I  GL     ++     VE +  +A+ MR    K +     +  + +RIG H+G VA G++G + PRY +FG T+  A  MEST E  +IQ+SD  + +
Sbjct:   12 AQQQADRLLYSILPKSIADDLKVGRQVPPQLYPCAT-VLFSDIRGFTRLSSISTPFQIVKFLNDLFSGFDDII-SKHDAYKVETIGDAYMIVSGL----PKENGYAHVENIGNIALQMRSFVTKFKIVHRPEERLMVRIGFHSGAVAAGVVGLITPRYCLFGDTVNMASRMESTCEPNEIQISDQSYNL 194          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: A0A2T1DSE7_9CYAN (Adenylate/guanylate cyclase (Fragment) n=1 Tax=filamentous cyanobacterium Phorm 46 TaxID=2107705 RepID=A0A2T1DSE7_9CYAN)

HSP 1 Score: 127 bits (319), Expect = 3.540e-30
Identity = 81/227 (35.68%), Postives = 134/227 (59.03%), Query Frame = 1
Query:   76 ERRFAVLGLASRRAKFQADKVMRSLLPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAEEQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEEGAWRAAKRDKEVDSVLNLGGGATY 756
            ER+ A   L   +AK  ++K++ ++LP ++A+RL+ + +   E  P  V ++FAD+VGFTALSST    ++++LLN+++S FD L+    GL K+ TIGDAY++ GGL E   +  +A     + K+A+ M+    +         +IRIGIH+GPV  G++G  +  Y ++G T+  A  MES G   +IQVS+T +++ E    +   +++ +  V   GG  TY
Sbjct:  268 ERKQAEDALREEQAK--SEKLLLNILPKAIAERLKQNETTIAEYFPE-VTVLFADIVGFTALSSTMNPIELVELLNKIFSRFD-LLCEQHGLEKIKTIGDAYMVVGGLPEPRADHAEA-----IAKMALDMQTEMARFNANNNKYFSIRIGIHSGPVVAGVIGIKKFIYDLWGDTVNIASRMESHGLPWRIQVSETTYKLLEH---KYLLQERGIIQVKGKGGMITY 482          
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Match: B5JTL4_9GAMM (Adenylate cyclase n=1 Tax=gamma proteobacterium HTCC5015 TaxID=391615 RepID=B5JTL4_9GAMM)

HSP 1 Score: 125 bits (315), Expect = 6.020e-30
Identity = 73/204 (35.78%), Postives = 120/204 (58.82%), Query Frame = 1
Query:   76 ERRFAVLGLASRRAKFQADKVMRSLLPPSVAKRL-EADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLLNELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAEEQTQAGLVEKVFKVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPTILEAELMESTGERGKIQVSDTVWRMYEE 684
            ER   V      +A+ ++D+++ ++LP S+A+R+ + +L I  + HP+ V ++FADL GFT  +S R    V+ +L  ++S FD LV  + G  K+ TIGDAY++  G  +   +  Q      +  +A+ M    E++   QG  +A+R+G+H GPV  G++G LR  Y V+G T+  A  MES GE G+IQVS+  ++  +E
Sbjct:  201 EREVLVSEADLEQARERSDRLLAAVLPESIAERMRQGELQIA-DSHPQ-VTVLFADLSGFTPWASGREPAQVVAMLERIFSGFDRLV-EAAGAEKIKTIGDAYMVVSGAPQARSDHAQV-----IAGIALEMLAVVEQVNREQGSRLALRVGVHTGPVVAGVIGKLRFSYDVWGDTVNTASRMESHGEPGRIQVSEATFKQLDE 396          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66404.16110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PEN5_CAFRO3.420e-5949.57Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8C5F5_CAFRO3.650e-5749.57Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A5A8CYR3_CAFRO3.780e-5749.57Guanylate cyclase domain-containing protein n=2 Ta... [more]
A0A5A8C5V9_CAFRO3.890e-5749.57Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812P1B7_9DINO1.600e-4847.51Npr2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A842PZS8_9ARCH3.410e-3136.60Adenylate/guanylate cyclase domain-containing prot... [more]
A0A183CXW0_9BILA1.160e-3040.54Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A3P7DJV1_WUCBA1.510e-3037.04Guanylate cyclase domain-containing protein n=2 Ta... [more]
A0A2T1DSE7_9CYAN3.540e-3035.68Adenylate/guanylate cyclase (Fragment) n=1 Tax=fil... [more]
B5JTL4_9GAMM6.020e-3035.78Adenylate cyclase n=1 Tax=gamma proteobacterium HT... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66404contigM-pyrifera_M_contig66404:29..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score129.8
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog391615.ABSJ01000042_gene2211
KEGG rclassRC00295
KEGG koko:K01768
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213
KEGG ModuleM00695
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Adenylyl- / guanylyl cyclase, catalytic domain
EggNOG OGs1QWNC@1224,1S3UK@1236,COG2114@1,COG2114@2
EC4.6.1.1
COG Functional cat.T
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size792
Cds size792
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.3315103-CDS-M-pyrifera_M_contig66404:28..8201622816554.3315103-CDS-M-pyrifera_M_contig66404:28..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66404 29..820 -
1692278043.7039666-CDS-M-pyrifera_M_contig66404:28..8201692278043.7039666-CDS-M-pyrifera_M_contig66404:28..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66404 29..820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66404.16110.1prot_M-pyrifera_M_contig66404.16110.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66404 29..820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66404.16110.1

>prot_M-pyrifera_M_contig66404.16110.1 ID=prot_M-pyrifera_M_contig66404.16110.1|Name=mRNA_M-pyrifera_M_contig66404.16110.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=264bp
VAFGWIVSVVTSIVAVNVMVEWEGGERRFAVLGLASRRAKFQADKVMRSL
LPPSVAKRLEADLSIPFEVHPRPVLIIFADLVGFTALSSTRGSGDVMKLL
NELYSTFDELVMSSTGLYKLDTIGDAYVICGGLLEQAEEQTQAGLVEKVF
KVAVGMREATEKMRNAQGVDIAIRIGIHAGPVATGIMGTLRPRYHVFGPT
ILEAELMESTGERGKIQVSDTVWRMYEEGAWRAAKRDKEVDSVLNLGGGA
TYGRVEGKWLEKE*
back to top

mRNA from alignment at M-pyrifera_M_contig66404:29..820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66404.16110.1 ID=mRNA_M-pyrifera_M_contig66404.16110.1|Name=mRNA_M-pyrifera_M_contig66404.16110.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig66404:29..820- (Macrocystis pyrifera P11B4 male)
GTTGCATTTGGATGGATTGTGTCCGTGGTGACTTCGATTGTAGCTGTCAA CGTGATGGTAGAATGGGAGGGTGGTGAGCGCAGATTTGCGGTGTTGGGGT TGGCAAGTCGCCGTGCAAAATTCCAAGCTGACAAAGTCATGCGCTCCCTC CTCCCTCCCTCCGTTGCGAAGCGTCTCGAAGCAGACTTATCTATTCCTTT TGAAGTTCACCCACGACCTGTTCTCATCATATTTGCTGACTTGGTAGGCT TCACCGCGCTCTCGTCAACCCGTGGATCTGGTGATGTGATGAAACTACTC AATGAGCTTTACAGCACATTCGACGAACTTGTCATGAGTAGCACGGGGCT GTACAAGCTTGACACCATTGGTGATGCTTATGTAATTTGTGGAGGGTTGT TGGAACAAGCAGAGGAGCAAACGCAAGCTGGTCTTGTTGAAAAAGTGTTC AAAGTTGCCGTAGGCATGCGAGAAGCAACAGAAAAGATGCGAAATGCGCA AGGTGTGGATATTGCCATCCGAATTGGAATTCATGCTGGACCAGTTGCGA CGGGAATTATGGGAACACTGCGCCCAAGATACCATGTGTTTGGCCCAACC ATCCTTGAAGCAGAATTGATGGAGAGTACAGGAGAGAGAGGAAAGATTCA AGTAAGCGATACTGTGTGGCGTATGTACGAAGAAGGAGCATGGAGGGCAG CAAAACGAGACAAGGAAGTTGATAGTGTCCTGAATCTAGGAGGTGGCGCG ACATATGGAAGAGTTGAAGGAAAATGGTTGGAGAAAGAGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66404:29..820-

>mRNA_M-pyrifera_M_contig66404.16110.1 ID=mRNA_M-pyrifera_M_contig66404.16110.1|Name=mRNA_M-pyrifera_M_contig66404.16110.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1584bp|location=Sequence derived from alignment at M-pyrifera_M_contig66404:29..820- (Macrocystis pyrifera P11B4 male)
GTTGCATTTGGATGGATTGTGTCCGTGGTGACTTCGATTGTAGCTGTCAA
CGTGATGGTAGAATGGGAGGGTGGTGAGCGCAGATTTGCGGTGTTGGGGT
TGGCAAGTCGCCGTGCAAAATTCCAAGCTGACAAAGTCATGCGCTCCCTC
CTCCCTCCCTCCGTTGCGAAGCGTCTCGAAGCAGACTTATCTATTCCTTT
TGAAGTTCACCCACGACCTGTTCTCATCATATTTGCTGACTTGGTAGGCT
TCACCGCGCTCTCGTCAACCCGTGGATCTGGTGATGTGATGAAACTACTC
AATGAGCTTTACAGCACATTCGACGAACTTGTCATGAGTAGCACGGGGCT
GTACAAGCTTGACACCATTGGTGATGCTTATGTAATTTGTGGAGGGTTGT
TGGAACAAGCAGAGGAGCAAACGCAAGCTGGTCTTGTTGAAAAAGTGTTC
AAAGTTGCCGTAGGCATGCGAGAAGCAACAGAAAAGATGCGAAATGCGCA
AGGTGTGGATATTGCCATCCGAATTGGAATTCATGCTGGACCAGTTGCGA
CGGGAATTATGGGAACACTGCGCCCAAGATACCATGTGTTTGGCCCAACC
ATCCTTGAAGCAGAATTGATGGAGAGTACAGGAGAGAGAGGAAAGATTCA
AGTAAGCGATACTGTGTGGCGTATGTACGAAGAAGGAGCATGGAGGGCAG
CAAAACGAGACAAGGAAGTTGATAGTGTCCTGAATCTAGGAGGTGGCGCG
ACATATGGAAGAGTTGAAGGAAAATGGTTGGAGAAAGAGTAAGTTGCATT
TGGATGGATTGTGTCCGTGGTGACTTCGATTGTAGCTGTCAACGTGATGG
TAGAATGGGAGGGTGGTGAGCGCAGATTTGCGGTGTTGGGGTTGGCAAGT
CGCCGTGCAAAATTCCAAGCTGACAAAGTCATGCGCTCCCTCCTCCCTCC
CTCCGTTGCGAAGCGTCTCGAAGCAGACTTATCTATTCCTTTTGAAGTTC
ACCCACGACCTGTTCTCATCATATTTGCTGACTTGGTAGGCTTCACCGCG
CTCTCGTCAACCCGTGGATCTGGTGATGTGATGAAACTACTCAATGAGCT
TTACAGCACATTCGACGAACTTGTCATGAGTAGCACGGGGCTGTACAAGC
TTGACACCATTGGTGATGCTTATGTAATTTGTGGAGGGTTGTTGGAACAA
GCAGAGGAGCAAACGCAAGCTGGTCTTGTTGAAAAAGTGTTCAAAGTTGC
CGTAGGCATGCGAGAAGCAACAGAAAAGATGCGAAATGCGCAAGGTGTGG
ATATTGCCATCCGAATTGGAATTCATGCTGGACCAGTTGCGACGGGAATT
ATGGGAACACTGCGCCCAAGATACCATGTGTTTGGCCCAACCATCCTTGA
AGCAGAATTGATGGAGAGTACAGGAGAGAGAGGAAAGATTCAAGTAAGCG
ATACTGTGTGGCGTATGTACGAAGAAGGAGCATGGAGGGCAGCAAAACGA
GACAAGGAAGTTGATAGTGTCCTGAATCTAGGAGGTGGCGCGACATATGG
AAGAGTTGAAGGAAAATGGTTGGAGAAAGAGTAA
back to top