mRNA_M-pyrifera_M_contig66349.16099.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66349.16099.1
Unique NamemRNA_M-pyrifera_M_contig66349.16099.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A5A8E9G2_CAFRO (JmjC domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9G2_CAFRO)

HSP 1 Score: 159 bits (401), Expect = 1.660e-42
Identity = 72/187 (38.50%), Postives = 110/187 (58.82%), Query Frame = 1
Query:    7 VDEFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEG--------EAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCA-----KDNRE---------DWYQPSDDLCAVLQSSCFPWWEAAF 501
            V E  L+ HWR++L G +G+GMFNH+DTL T+S+Q +++G KRWH+CS  +D +L+             GR  LFRPDY ++P L+ LDCF D++M GE +FYP+ +WH+T+++ D ++  +G+L+   N   + ++    CA     +  R          D+ QPS DLC   +  C  WWE  F
Sbjct:  332 VSEHFLTTHWRMLLVGRKGSGMFNHKDTLQTTSYQLQLQGAKRWHLCSPVHDRVLDALGNAFATDNGGAGRLSLFRPDYGRYPSLRSLDCFVDDVMEGEAVFYPREFWHETDNLYDWTVSLSGSLVGPRNGAHLARQLRASCADAAASEGGRRAAGSQSAPLDFIQPSADLCRHYER-CLQWWEDGF 517          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A5A8E9R7_CAFRO (JmjC domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9R7_CAFRO)

HSP 1 Score: 147 bits (372), Expect = 3.560e-40
Identity = 71/167 (42.51%), Postives = 102/167 (61.08%), Query Frame = 1
Query:    1 SFVDEFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQSSCFPWWEAAF 501
            +  +EF  ++HWR++L+GSRGAGMF H D L T+S+Q ++ G KRWH+C+      L   A+    D F PDYT     +DL CF D ++PGE +FYP+N+WHQTE++   S   + T++D  N R V  E +  C+  NR    +PS  LC+ L   CF WW +A+
Sbjct:  100 ALAEEFSRASHWRMLLSGSRGAGMFGHWDVLATASWQFQVSGAKRWHVCAPDQRPRLGNAAD---FDGFFPDYTAVEGARDLLCFLDVVLPGEFIFYPRNFWHQTENLVTPSTSISSTVVDALNHRTVANELKRECSGLNRL--MRPSPALCSALDR-CFEWWGSAY 260          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A5A8C179_CAFRO (JmjC domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C179_CAFRO)

HSP 1 Score: 147 bits (372), Expect = 2.220e-39
Identity = 71/167 (42.51%), Postives = 102/167 (61.08%), Query Frame = 1
Query:    1 SFVDEFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQSSCFPWWEAAF 501
            +  +EF  ++HWR++L+GSRGAGMF H D L T+S+Q ++ G KRWH+C+      L   A+    D F PDYT     +DL CF D ++PGE +FYP+N+WHQTE++   S   + T++D  N R V  E +  C+  NR    +PS  LC+ L   CF WW +A+
Sbjct:  194 ALAEEFSRASHWRMLLSGSRGAGMFGHWDVLATASWQFQVSGAKRWHVCAPDQRPRLGNAAD---FDGFFPDYTAVEGARDLLCFLDVVLPGEFIFYPRNFWHQTENLVTPSTSISSTVVDALNHRTVANELKRECSGLNRL--MRPSPALCSALDR-CFEWWGSAY 354          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A0G4IH14_PLABS (JmjC domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IH14_PLABS)

HSP 1 Score: 143 bits (361), Expect = 1.150e-37
Identity = 71/171 (41.52%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    1 SFVDEFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICS-TANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQSSCFPWWEAAFSFD 510
            + VD F L  HWR++L G++GAGMF H D L  SS+Q +I G KRW IC   AND +L      G  D FRPD  ++P+     C+ D + PGE+LFYP++YWHQT +++  ++  TGT++D+NN   V++E  + C    +  W+   DDLC  L+  C+  W A  + D
Sbjct:  277 ALVDRFSLRLHWRMLLIGTQGAGMFFHHDVLRGSSWQVQIAGSKRWTICDPAANDGLLYAA---GDVDTFRPDLARWPRFAASTCYDDVVRPGEMLFYPRDYWHQTLNLETPTITLTGTVVDENNADTVERELRDECTT-GKWGWHL-GDDLCGQLEQ-CYALWNATMTGD 441          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A0H5RE41_9EUKA (JmjC domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RE41_9EUKA)

HSP 1 Score: 135 bits (341), Expect = 5.820e-35
Identity = 66/155 (42.58%), Postives = 99/155 (63.87%), Query Frame = 1
Query:    7 VDEFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICS-TANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQ 468
            ++E+ L  HWR+VL G++ AGMF HRD L  SS+QA++ G KRW IC   AN+  L    E G  + F PD  +FP+     C+ D +M GE++FYP++YWHQT +M   ++  +GT++D NN + V+QE E+ C +  + +W+  SD LC  L+
Sbjct:  274 INEYSLRLHWRMVLIGTKDAGMFFHRDVLRGSSWQAQVSGSKRWTICDPVANNGRLY---EAGDVNTFAPDLVKFPKFAQTICYDDVVMAGEMIFYPQDYWHQTLNMATPTITISGTMVDHNNLQGVEQELESECKR-GKWNWHLSSD-LCDALE 423          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A812K2C0_9DINO (HSPBAP1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812K2C0_9DINO)

HSP 1 Score: 122 bits (306), Expect = 1.910e-29
Identity = 62/167 (37.13%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    7 VDEFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLC-AKDNREDWYQPSDDLCAVLQSSCFPWWEAAFS 504
            ++ F  ++HWR++L G+R AGMFNH D L +SS+Q +  GRK WHIC  +     +   + G  + F P Y +FP+  D DC      PG++L+YP++YWH T ++DD ++ FT TL D  N   +  EF++ C    NR      + + C  L +S + +W  AF+
Sbjct:  331 INNFQKASHWRMLLIGNRHAGMFNHWDILRSSSYQFQAAGRKLWHICPPSE---WDRMYKAGDVNTFNPLYERFPKFLDADCVLGVAQPGDMLWYPRDYWHHTYNVDDWNVAFTSTLADGYNTDTLAAEFDSECRGVTNRLPGM--TKETCRKL-TSAYDFWRQAFT 491          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A482T0H8_9ARCH (JmjC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0H8_9ARCH)

HSP 1 Score: 110 bits (274), Expect = 3.200e-25
Identity = 50/158 (31.65%), Postives = 82/158 (51.90%), Query Frame = 1
Query:   13 EFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQSSCFPW 486
            ++    HW+++L G  GAGMF H+D L T+++Q ++ GRK WH+C       L    + G  D+F PDY  +P  +   C+   +  G++LFYP  YWHQT + D  S+  + ++I +     +  E +  C    R   + PS+ LC  ++     W
Sbjct:  284 DYFWKTHWKMLLLGEEGAGMFLHQDILLTAAYQIQLVGRKEWHLCDALQSPYLY---KAGDVDMFIPDYQTYPLAEQAACYEVVVHAGDLLFYPHAYWHQTVNHDTPSIAISSSVITKQGLPGLLAELQKECGGARRI--FVPSESLCGGIERCGVEW 436          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A7S2XFS9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFS9_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 3.350e-25
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   13 EFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQS 471
            EF +  HWR++L GS+GAGMFNH D+L TSS+ A +RG+K W++C+                             K+  C    + PGEVLFY   +WH+T+++ + ++  TGT ID+ N+R V +     C +   E  ++ S +LC  L +
Sbjct:   49 EFFIKTHWRVILVGSKGAGMFNHTDSLRTSSWHAHVRGKKWWYLCAP----------------------------KERGCMEAVVEPGEVLFYSTGWWHETQNLLNPTITVTGTRIDKRNFRAVTKMLHGECVRG--EVGFKFSSELCDALDT 171          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: F0Y6F9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6F9_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 9.770e-21
Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   13 EFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQS 471
            E+ L  HW+I+L G+RGAGMFNH D+L TSS+ A++ GRK WH+C   +D               RP            C+   + PGE+L+Y + + H+T+++DD +   T T +   N+  V  +    C ++  +  ++ S  LC  L +
Sbjct:  370 EYHLKTHWKILLVGARGAGMFNHSDSLQTSSWHAQLAGRKWWHVCGALSDG--------------RP-----------KCYEGIVAPGEILYYGRGWSHETQNLDDPTATITDTAVHARNFAAVADKLHGECTREVLD--FRFSGQLCDALDA 495          
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Match: A0A7S0A463_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A463_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 6.090e-19
Identity = 51/161 (31.68%), Postives = 72/161 (44.72%), Query Frame = 1
Query:   13 EFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICSTANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKNYWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDDLCAVLQSSCFPWWEA 495
            E+ L  HW+I+L GS GAGM NH DTL TSS+ A + G K WH+C                           PQ     CF   L PGE+L+YP+ + H+T+ +   ++  T T+   +N   + ++    C        +  S  LC  L   C  WW A
Sbjct:   46 EWHLKTHWKIILVGSHGAGMLNHSDTLMTSSWHAHVVGNKWWHLCG-------------------------HPQNGSTVCFEGVLRPGEILYYPQGWHHETQCLKTPTVTITDTVAHTSNAEGILEKAYGECTG-RAPLKFDFSARLCDALDE-CALWWRA 179          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66349.16099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A5A8E9G2_CAFRO1.660e-4238.50JmjC domain-containing protein n=5 Tax=Cafeteria r... [more]
A0A5A8E9R7_CAFRO3.560e-4042.51JmjC domain-containing protein n=2 Tax=Cafeteria r... [more]
A0A5A8C179_CAFRO2.220e-3942.51JmjC domain-containing protein n=2 Tax=Cafeteria r... [more]
A0A0G4IH14_PLABS1.150e-3741.52JmjC domain-containing protein n=1 Tax=Plasmodioph... [more]
A0A0H5RE41_9EUKA5.820e-3542.58JmjC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A812K2C0_9DINO1.910e-2937.13HSPBAP1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A482T0H8_9ARCH3.200e-2531.65JmjC domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S2XFS9_9EUKA3.350e-2533.99Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
F0Y6F9_AURAN9.770e-2132.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0A463_9DINO6.090e-1931.68Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66349contigM-pyrifera_M_contig66349:318..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue6.2e-24
Seed eggNOG ortholog227086.JGI_V11_67214
Hectar predicted targeting categoryother localisation
EggNOG OGs2D17N@1,2SH0I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.6863499-CDS-M-pyrifera_M_contig66349:317..8271622816553.6863499-CDS-M-pyrifera_M_contig66349:317..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66349 318..827 -
1692278043.2518032-CDS-M-pyrifera_M_contig66349:317..8271692278043.2518032-CDS-M-pyrifera_M_contig66349:317..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66349 318..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66349.16099.1prot_M-pyrifera_M_contig66349.16099.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66349 318..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66349.16099.1

>prot_M-pyrifera_M_contig66349.16099.1 ID=prot_M-pyrifera_M_contig66349.16099.1|Name=mRNA_M-pyrifera_M_contig66349.16099.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
SFVDEFLLSNHWRIVLTGSRGAGMFNHRDTLHTSSFQAKIRGRKRWHICS
TANDVILEGEAEEGRADLFRPDYTQFPQLKDLDCFADELMPGEVLFYPKN
YWHQTESMDDVSLGFTGTLIDQNNWRDVKQEFENLCAKDNREDWYQPSDD
LCAVLQSSCFPWWEAAFSFD
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mRNA from alignment at M-pyrifera_M_contig66349:318..827-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66349.16099.1 ID=mRNA_M-pyrifera_M_contig66349.16099.1|Name=mRNA_M-pyrifera_M_contig66349.16099.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig66349:318..827- (Macrocystis pyrifera P11B4 male)
TCTTTTGTGGACGAATTTTTGTTGAGCAATCATTGGAGGATTGTATTGAC TGGGAGTCGAGGTGCTGGGATGTTCAATCACCGCGATACGTTGCATACAA GTTCATTCCAAGCTAAAATTCGTGGGAGGAAGCGATGGCATATATGCAGT ACTGCGAATGATGTAATCTTGGAAGGAGAAGCAGAAGAAGGGAGGGCGGA TTTATTCCGGCCAGACTATACGCAGTTTCCACAATTGAAGGACCTAGATT GTTTTGCTGACGAGTTGATGCCTGGAGAAGTGCTCTTTTACCCCAAGAAC TACTGGCATCAAACAGAATCGATGGATGACGTGAGTCTTGGCTTTACAGG CACTCTGATCGACCAAAACAACTGGAGAGATGTAAAACAAGAATTCGAAA ATTTATGTGCCAAAGACAATCGAGAAGATTGGTACCAACCATCTGACGAC CTCTGTGCTGTCTTGCAATCGTCCTGTTTTCCCTGGTGGGAAGCGGCCTT CTCCTTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66349:318..827-

>mRNA_M-pyrifera_M_contig66349.16099.1 ID=mRNA_M-pyrifera_M_contig66349.16099.1|Name=mRNA_M-pyrifera_M_contig66349.16099.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig66349:318..827- (Macrocystis pyrifera P11B4 male)
TCTTTTGTGGACGAATTTTTGTTGAGCAATCATTGGAGGATTGTATTGAC
TGGGAGTCGAGGTGCTGGGATGTTCAATCACCGCGATACGTTGCATACAA
GTTCATTCCAAGCTAAAATTCGTGGGAGGAAGCGATGGCATATATGCAGT
ACTGCGAATGATGTAATCTTGGAAGGAGAAGCAGAAGAAGGGAGGGCGGA
TTTATTCCGGCCAGACTATACGCAGTTTCCACAATTGAAGGACCTAGATT
GTTTTGCTGACGAGTTGATGCCTGGAGAAGTGCTCTTTTACCCCAAGAAC
TACTGGCATCAAACAGAATCGATGGATGACGTGAGTCTTGGCTTTACAGG
CACTCTGATCGACCAAAACAACTGGAGAGATGTAAAACAAGAATTCGAAA
ATTTATGTGCCAAAGACAATCGAGAAGATTGGTACCAACCATCTGACGAC
CTCTGTGCTGTCTTGCAATCGTCCTGTTTTCCCTGGTGGGAAGCGGCCTT
CTCCTTCGACTCTTTTGTGGACGAATTTTTGTTGAGCAATCATTGGAGGA
TTGTATTGACTGGGAGTCGAGGTGCTGGGATGTTCAATCACCGCGATACG
TTGCATACAAGTTCATTCCAAGCTAAAATTCGTGGGAGGAAGCGATGGCA
TATATGCAGTACTGCGAATGATGTAATCTTGGAAGGAGAAGCAGAAGAAG
GGAGGGCGGATTTATTCCGGCCAGACTATACGCAGTTTCCACAATTGAAG
GACCTAGATTGTTTTGCTGACGAGTTGATGCCTGGAGAAGTGCTCTTTTA
CCCCAAGAACTACTGGCATCAAACAGAATCGATGGATGACGTGAGTCTTG
GCTTTACAGGCACTCTGATCGACCAAAACAACTGGAGAGATGTAAAACAA
GAATTCGAAAATTTATGTGCCAAAGACAATCGAGAAGATTGGTACCAACC
ATCTGACGACCTCTGTGCTGTCTTGCAATCGTCCTGTTTTCCCTGGTGGG
AAGCGGCCTTCTCCTTCGAC
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