mRNA_M-pyrifera_M_contig66343.16094.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66343.16094.1
Unique NamemRNA_M-pyrifera_M_contig66343.16094.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66343.16094.1 vs. uniprot
Match: A0A2P6V2J8_9CHLO (Histone H4 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V2J8_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.130e-10
Identity = 88/304 (28.95%), Postives = 121/304 (39.80%), Query Frame = 1 
Query:   13 EVGGXXXXEAGGRKKKEKMVEAPFDPKVVSALEMMGLSKERAIRGAWLGRDEETGEQSEARALEWLEAHEGDENLDDPFLVPKSEVEASLPLEERLRAAKELIARKRLERAEEEXXXXXXXXXXXXXXXXXLAAAREELDALQRKREAEXXXXXXXEAAEALHRQRVMLLRDRVERALRNGNEAKAAELKQQLRELEEGKATPALDRIS------DVREKFHRAIRAMKTFHK-DDAGLKAI-KAIRTICGNAQSKSAEDPKFLTLPLHTPGVQRRLVPVMGAIAFLQAAGFQKTEDGNALVLP 900
            E G      +GG  + E+MV A      +  +E MG    RA R  +      +GE  EA AL WLE H+GD ++D+P +VPKS  +  L  EE   AA ELI R R  R  + X                LA A  + D L+ KR  E    XXX                      + G   +  E                  +        +V EK    +  MK  H   D G+K   + +  +CGN  +   ED KF  + L  P +Q+R+    GA+ FL  AGFQ+   G  L +P
Sbjct:  206 EAGDARPGSSGGGGEPEEMVPAEVHADTLKQMEEMGFPTARATRALY-----HSGESLEA-ALGWLEEHQGDADIDEPLMVPKSAPKKKLTPEEAKAAAAELIKRARERRERDXXEAERLREQERIRAGKELALAARQEDELRLKRMIEARRLXXXXXXXXXXXXXXXXXXXXXXXXXKLGLPEELTEXXXXXXXXXXXXXXXXXXKRKLPVKPVEVGEKMRNILVDMKKAHGGQDEGVKTCWQTLLKMCGNVYANPGED-KFRRIRLTNPAIQQRVAAFTGAVDFLLLAGFQRDASGEGLEMP 502
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BLAST of mRNA_M-pyrifera_M_contig66343.16094.1 vs. uniprot
Match: E1ZIQ9_CHLVA (UBA domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIQ9_CHLVA)

HSP 1 Score: 58.9 bits (141), Expect = 4.440e-6
Identity = 87/302 (28.81%), Postives = 121/302 (40.07%), Query Frame = 1 
Query:   40 AGGRKKKEKMVEAPFDPKVVSALEMMGLSKERAIRGAWLGRDEETGEQSEARALEWLEAHEGDENLDDPFLVPKSEVEASLPLEERLRAAKELIARKRLERAEEEXXXXXXXXXXXXXXXXXLAAAREELDALQRKREAEXXXXXXXEAAEALHRQRVMLLRDRVERALRNGNEAKAAELKQQLRELEEGKATPALDRIS-------------DVREKFHRAIRAMKTFH--KDDAGLKAIKAIRTICGNAQSKSAEDPKFLTLPLHTPGVQRRLVPVMGAIAFLQAAGFQKTEDGNALVLP 900
            AGG  + E++V A  +  ++  +E MG    RA R  +       GE  EA A+ WLE H+GD +LD+P LVPKS+ +  L  EE    A EL+ + R       XX               LA A  + + L       XXXXXXX                      R G       L ++L E                           +V EK    +  MK  H  +DDA     + +  +CGN  +   ED KF  + L  P +Q+R+    GA+ FL  AGFQ+   G  L +P
Sbjct:   97 AGGGSQAEELVPAEVNADLLKQMEEMGFPAARATRALY----HSGGENLEA-AVGWLEEHQGDADLDEPLLVPKSQPKKKLSPEEAKAQAAELVRKVRERXXXXXXXTERLREQERIRAGKELALAARQEEXLXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLG-------LPEELTEXXXXXXXXXXXXXXXXXXXRRLPIKPVEVGEKMRTLLVDMKKAHPGQDDALKTCWQTLLKMCGNIYANPGED-KFRRVRLTNPAIQQRVAAFTGAVDFLHLAGFQRDAGGENLEMP 385
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BLAST of mRNA_M-pyrifera_M_contig66343.16094.1 vs. uniprot
Match: A0A250XFS3_9CHLO (UBA domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XFS3_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 6.120e-5
Identity = 81/290 (27.93%), Postives = 132/290 (45.52%), Query Frame = 1 
Query:   64 KMVEAPFDPKVVSALEMMGLSKERAIRGAWLGRDEETGEQSEARALEWLEAHEGDENLDDPFLVPKSEVEASLPLEERLRAAKELIARKRLERAEEEXXXXXXXXXXXXXXXXXLAAAREELDALQRKREAEXXXXXXX-------------EAAEALHRQRVMLLRDRVERALRNGNEAKAAELKQQLRELEEGKATPALDRISDVREKFHRAIRAMK-----TFHKDDAGLKAIKAIRTICGNAQSKSAEDPKFLTLPLHTPGVQRRLVPVMGAIAFLQAAGFQKTED 879
            +MV A  D  ++  +E MG S  RA R         +G  S   A+ WL+ HE D +LD+P L+PK  ++  L  EE  + A+E I + + +R    XXXXX            + A + + D   RKR   XXXXXXX             E        ++ L  +  E   R    A+A ++++Q +E EEGK      +   V +K  + +  MK     +  +++    A+  +    GN  S+  E+ KF  + L     Q+R+  + G++  L+ AGFQ+ ++
Sbjct:  115 EMVPAVVDESMLKEMEGMGFSAPRATRALHF-----SGNSSVEGAINWLDQHEADIDLDEPLLIPKESLKPKLSPEEARKKAEEAIRKAKEKRXXXXXXXXXVRELERIRAGKEMLAMKAKADEADRKRXXXXXXXXXXXXXXXXXXIXAKLEXXXXXXXXQMGLPEELTEEEKR----AEAEKVEKQRKE-EEGKKVFTFVKPISVIDKVRKTLVDMKKASSASSAEEERFKTAVSTMLKYVGNVASQPDEE-KFRNIKLSNAAFQQRVASLEGSLVVLEQAGFQRVDE 393
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66343.16094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2P6V2J8_9CHLO1.130e-1028.95Histone H4 n=1 Tax=Micractinium conductrix TaxID=5... [more]
E1ZIQ9_CHLVA4.440e-628.81UBA domain-containing protein n=1 Tax=Chlorella va... [more]
A0A250XFS3_9CHLO6.120e-527.93UBA domain-containing protein n=1 Tax=Chlamydomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66343contigM-pyrifera_M_contig66343:72..1226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue5.5e-13
Seed eggNOG ortholog67593.Physo129041
Preferred nameTXNDC8
KEGG koko:K03671,ko:K14011,ko:K15627
KEGG Pathwayko04141,ko04621,ko05202,ko05418,map04141,map04621,map05202,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PUB domain
EggNOG OGs3QBRY@4776,COG0526@1,KOG0907@2759,KOG2699@1,KOG2699@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons3
Model size972
Cds size972
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66343.16094.1prot_M-pyrifera_M_contig66343.16094.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66343 72..1226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.4793985-CDS-M-pyrifera_M_contig66343:71..7671622816553.4793985-CDS-M-pyrifera_M_contig66343:71..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66343 72..767 -
1692278043.1513093-CDS-M-pyrifera_M_contig66343:71..7671692278043.1513093-CDS-M-pyrifera_M_contig66343:71..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66343 72..767 -
1622816553.4933102-CDS-M-pyrifera_M_contig66343:908..11391622816553.4933102-CDS-M-pyrifera_M_contig66343:908..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66343 909..1139 -
1692278043.1757247-CDS-M-pyrifera_M_contig66343:908..11391692278043.1757247-CDS-M-pyrifera_M_contig66343:908..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66343 909..1139 -
1622816553.5096378-CDS-M-pyrifera_M_contig66343:1181..12261622816553.5096378-CDS-M-pyrifera_M_contig66343:1181..1226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66343 1182..1226 -
1692278043.188123-CDS-M-pyrifera_M_contig66343:1181..12261692278043.188123-CDS-M-pyrifera_M_contig66343:1181..1226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66343 1182..1226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66343.16094.1

>prot_M-pyrifera_M_contig66343.16094.1 ID=prot_M-pyrifera_M_contig66343.16094.1|Name=mRNA_M-pyrifera_M_contig66343.16094.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=324bp
GGGGEVGGGGVGEAGGRKKKEKMVEAPFDPKVVSALEMMGLSKERAIRGA
WLGRDEETGEQSEARALEWLEAHEGDENLDDPFLVPKSEVEASLPLEERL
RAAKELIARKRLERAEEEKRLAREREIRRREEGRKLAAAREELDALQRKR
EAEKRAREKKEAAEALHRQRVMLLRDRVERALRNGNEAKAAELKQQLREL
EEGKATPALDRISDVREKFHRAIRAMKTFHKDDAGLKAIKAIRTICGNAQ
SKSAEDPKFLTLPLHTPGVQRRLVPVMGAIAFLQAAGFQKTEDGNALVLP
DPAAHPDIATNLERASAALQAAID
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mRNA from alignment at M-pyrifera_M_contig66343:72..1226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66343.16094.1 ID=mRNA_M-pyrifera_M_contig66343.16094.1|Name=mRNA_M-pyrifera_M_contig66343.16094.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at M-pyrifera_M_contig66343:72..1226- (Macrocystis pyrifera P11B4 male)
GGAGGTGGTGGGGAGGTGGGAGGAGGTGGGGTGGGGGAGGCGGGGGTGGT
GGAGGGGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGGGGAGGAAGAAGA
AAGAAAAGATGGTTGAGGCTCCGTTTGATCCAAAAGTGGTTTCTGCGTTG
GAAATGATGGGGTTGAGCAAGGAGCGTGCAATTCGTGGTGCGTGGTTGGG
GCGTGATGAGGAGACTGGGGAGCAATCTGAGGCACGTGCATTGGAGTGGT
TGGAGGCGCATGAAGGAGATGAAAATTTGGATGATCCTTTTCTTGTGCCG
AAATCAGAGGTGGAGGCTGTCTTGTCACGGGTGATGGAGACGTTCTCTGC
AGGTGTGGCGGTGGCGGTGGGGGGTGGTGGGGAAGGTGAAGGTGGTGGGG
GTGGTGGGGATGGTGGGGAAGAGGAGGAAATGGAGGCTGCGATGCGAGAA
GGAGATCAGAGTTTGCCTCTGGAGGAACGGTTGCGAGCAGCCAAGGAGTT
GATAGCGAGGAAGCGATTGGAGCGAGCGGAGGAGGAGAAGCGATTGGCTC
GAGAGCGAGAGATTCGAAGGAGGGAGGAAGGGAGGAAGCTGGCTGCCGCA
AGGGAGGAGCTGGATGCGTTGCAGCGCAAGAGGGAGGCGGAGAAGAGGGC
GAGGGAGAAGAAGGAGGCTGCCGAGGCCTTGCATCGCCAGAGAGTCATGT
TGTTGCGAGATCGCGTGGAACGGGCATTGCGTAATGGAAACGAGGCTAAG
GCGGCAGAGTTGAAGCAGCAGCTGCGGGAGCTGGAGGAAGGCAAGGCCAC
TCCAGCACTGGACCGCATTTCCGACGTGCGTGAGAAATTTCACCGGGCCA
TTCGGGCTATGAAAACGTTCCACAAGGATGACGCGGGACTCAAGGCCATC
AAGGCCATTCGCACCATTTGCGGCAACGCACAGAGCAAGAGCGCCGAAGA
CCCAAAGTTCCTCACTCTCCCGCTCCACACGCCAGGTGTGCAGAGGAGGC
TCGTTCCCGTCATGGGCGCCATCGCATTCCTCCAGGCCGCGGGATTCCAG
AAAACAGAGGACGGAAACGCACTCGTCCTCCCAGACCCAGCCGCACACCC
AGACATCGCCACCAACCTCGAAAGAGCCAGCGCGGCACTGCAGGCAGCCA
TCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66343:72..1226-

>mRNA_M-pyrifera_M_contig66343.16094.1 ID=mRNA_M-pyrifera_M_contig66343.16094.1|Name=mRNA_M-pyrifera_M_contig66343.16094.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1944bp|location=Sequence derived from alignment at M-pyrifera_M_contig66343:72..1226- (Macrocystis pyrifera P11B4 male)
GGAGGTGGTGGGGAGGTGGGAGGAGGTGGGGTGGGGGAGGCGGGGGGAGG
TGGTGGGGAGGTGGGAGGAGGTGGGGTGGGGGAGGCGGGGGGGAGGAAGA
AGAAAGAAAAGATGGTTGAGGCTCCGTTTGATCCAAAAGTGGTTTCTGCG
TTGGAAATGATGGGGTTGAGCAAGGAGCGTGCAATTCGTGGTGCGTGGTT
GGGGCGTGATGAGGAGACTGGGGAGCAATCTGAGGCACGTGCATTGGAGT
GGTTGGAGGCGCATGAAGGAGATGAAAATTTGGATGATCCTTTTCTTGTG
CCGAAATCAGAGGTGGAGGCTGGGAGGAAGAAGAAAGAAAAGATGGTTGA
GGCTCCGTTTGATCCAAAAGTGGTTTCTGCGTTGGAAATGATGGGGTTGA
GCAAGGAGCGTGCAATTCGTGGTGCGTGGTTGGGGCGTGATGAGGAGACT
GGGGAGCAATCTGAGGCACGTGCATTGGAGTGGTTGGAGGCGCATGAAGG
AGATGAAAATTTGGATGATCCTTTTCTTGTGCCGAAATCAGAGGTGGAGG
CTAGTTTGCCTCTGGAGGAACGGTTGCGAGCAGCCAAGGAGTTGATAGCG
AGGAAGCGATTGGAGCGAGCGGAGGAGGAGAAGCGATTGGCTCGAGAGCG
AGAGATTCGAAGGAGGGAGGAAGGGAGGAAGCTGGCTGCCGCAAGGGAGG
AGCTGGATGCGTTGCAGCGCAAGAGGGAGGCGGAGAAGAGGGCGAGGGAG
AAGAAGGAGGCTGCCGAGGCCTTGCATCGCCAGAGAGTCATGTTGTTGCG
AGATCGCGTGGAACGGGCATTGCGTAATGGAAACGAGGCTAAGGCGGCAG
AGTTGAAGCAGCAGCTGCGGGAGCTGGAGGAAGGCAAGGCCACTCCAGCA
CTGGACCGCATTTCCGACGTGCGTGAGAAATTTCACCGGGCCATTCGGGC
TATGAAAACGTTCCACAAGGATGACGCGGGACTCAAGGCCATCAAGGCCA
TTCGCACCATTTGCGGCAACGCACAGAGCAAGAGCGCCGAAGACCCAAAG
TTCCTCACTCTCCCGCTCCACACGCCAGGTGTGCAGAGGAGGCTCGTTCC
CGTCATGGGCGCCATCGCATTCCTCCAGGCCGCGGGATTCCAGAAAACAG
AGGACGGAAACGCACTCGTCCTCCCAGACCCAGCCGCACACCCAGACATC
GCCACCAACCTCGAAAGAGCCAGCGCGGCACTGCAGGCAGCCATCGACAG
TTTGCCTCTGGAGGAACGGTTGCGAGCAGCCAAGGAGTTGATAGCGAGGA
AGCGATTGGAGCGAGCGGAGGAGGAGAAGCGATTGGCTCGAGAGCGAGAG
ATTCGAAGGAGGGAGGAAGGGAGGAAGCTGGCTGCCGCAAGGGAGGAGCT
GGATGCGTTGCAGCGCAAGAGGGAGGCGGAGAAGAGGGCGAGGGAGAAGA
AGGAGGCTGCCGAGGCCTTGCATCGCCAGAGAGTCATGTTGTTGCGAGAT
CGCGTGGAACGGGCATTGCGTAATGGAAACGAGGCTAAGGCGGCAGAGTT
GAAGCAGCAGCTGCGGGAGCTGGAGGAAGGCAAGGCCACTCCAGCACTGG
ACCGCATTTCCGACGTGCGTGAGAAATTTCACCGGGCCATTCGGGCTATG
AAAACGTTCCACAAGGATGACGCGGGACTCAAGGCCATCAAGGCCATTCG
CACCATTTGCGGCAACGCACAGAGCAAGAGCGCCGAAGACCCAAAGTTCC
TCACTCTCCCGCTCCACACGCCAGGTGTGCAGAGGAGGCTCGTTCCCGTC
ATGGGCGCCATCGCATTCCTCCAGGCCGCGGGATTCCAGAAAACAGAGGA
CGGAAACGCACTCGTCCTCCCAGACCCAGCCGCACACCCAGACATCGCCA
CCAACCTCGAAAGAGCCAGCGCGGCACTGCAGGCAGCCATCGAC
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