mRNA_M-pyrifera_M_contig6628.16083.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI) HSP 1 Score: 121 bits (303), Expect = 6.000e-25 Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 1
Query: 1672 SACFGGAEWSS---IEQMLDRMHACAANYASALDSPSCTSDSNPEGGPVPTRSDKGSD-EWGP-GRGEAGIVQAYNYVIRTCGKAGGSEMALDFIQQMHKRGIAPDAASYSGAIVACDLSGMWEQAVALLGDMRDK 2064
SAC W + +LD MHAC A A + P EGG R G D +WGP G +G+VQAYN+VIR CG AGG+E L +Q+MH+RG+ PDAASYSGAI+ACDL+GMW +AV LL DMR+K
Sbjct: 38 SACGKAGRWEEAVGLLDILDLMHACEARAQPADNPPGINGAL--EGG----RESVGGDADWGPDGGSSSGLVQAYNHVIRACGAAGGTEFVLALLQEMHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMREK 167
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: A0A6H5J961_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J961_9PHAE) HSP 1 Score: 112 bits (280), Expect = 3.890e-22 Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = 1
Query: 1714 MLDRMHACAANYASALDSPSCTSDSNPEGGPVPTRSDKGSD-EWGP-GRGEAGIVQAYNYVIRTCGKAGGSEMALDFIQQMHKRGIAPDAASYSGAIVACDLSGMWEQAVALLGDMRDK 2064
+LD MHACAA+ A + P EGG R G D WG G +G+VQAYN+VIR CG AGG+E L +Q+MH+RG+ PDAASYSG I+ACDL+GMW +AV LL DMR +
Sbjct: 83 VLDLMHACAASAQPADNPPGFNR--TLEGG----RESVGGDAHWGADGGSSSGLVQAYNHVIRACGAAGGAEFVLALLQEMHRRGVPPDAASYSGGIIACDLAGMWREAVGLLDDMRQE 195
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 4.020e-10 Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 4 QAISMCGRQGLWKEAVFLLRDAQ--AAPRARRGVDVVTYSAAIXXXXXXXXXXXXXXXXXXMQATGIKADQI 213
QAIS+CGRQG W++A+FLLRDAQ ++P RGVDVVTYSAA+ MQA GIK DQI
Sbjct: 9 QAISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALMEEMQAAGIKPDQI 80
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.880e-9 Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 4 QAISMCGRQGLWKEAVFLLRDAQ--AAPRARRGVDVVTYSAAIXXXXXXXXXXXXXXXXXXMQATGIKADQI 213
+AIS+CGRQG W++AVFLLRDAQ ++P RRGVDVVT+SAA+ MQA GIK DQI
Sbjct: 107 KAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQI 178 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6628.16083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6628.16083.1 >prot_M-pyrifera_M_contig6628.16083.1 ID=prot_M-pyrifera_M_contig6628.16083.1|Name=mRNA_M-pyrifera_M_contig6628.16083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=719bp MQAISMCGRQGLWKEAVFLLRDAQAAPRARRGVDVVTYSAAIAACRNGGEback to top mRNA from alignment at M-pyrifera_M_contig6628:198..13357+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6628.16083.1 ID=mRNA_M-pyrifera_M_contig6628.16083.1|Name=mRNA_M-pyrifera_M_contig6628.16083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=13160bp|location=Sequence derived from alignment at M-pyrifera_M_contig6628:198..13357+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6628:198..13357+ >mRNA_M-pyrifera_M_contig6628.16083.1 ID=mRNA_M-pyrifera_M_contig6628.16083.1|Name=mRNA_M-pyrifera_M_contig6628.16083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4314bp|location=Sequence derived from alignment at M-pyrifera_M_contig6628:198..13357+ (Macrocystis pyrifera P11B4 male)back to top |