mRNA_M-pyrifera_M_contig66258.16080.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66258.16080.1
Unique NamemRNA_M-pyrifera_M_contig66258.16080.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66258.16080.1 vs. uniprot
Match: F0X1K7_9STRA (Uncharacterized protein AlNc14C637G12314 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X1K7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-6
Identity = 31/95 (32.63%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:   37 AGLRNVVSLISSLGGGHYLCHHLDEARKMAHYQIKMLLMLGDEDGARHALLHLVYLDAQSGMHKSATKRLSMVKRLARIHDDEGLLKAAEHAQQF 321
            A L  + + +S+LGGGH++C H+++AR MA  QI + + L D        +HL Y   Q+G  + A K +    R+A   ++E L K  + A+ +
Sbjct:  158 AALVTLNAYVSTLGGGHFMCKHINQARLMARLQIAISIGLQDPVLKSKCRIHLAYNAVQTGHFRKAFKIIRQEARVAEELENEELKKVCDAARTY 252
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BLAST of mRNA_M-pyrifera_M_contig66258.16080.1 vs. uniprot
Match: A0A024GVS3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVS3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.500e-6
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:   37 AGLRNVVSLISSLGGGHYLCHHLDEARKMAHYQIKMLLMLGDEDGARHALLHLVYLDAQSGMHKSATKRLSMVKRLARIHDDEGLLKAAEHAQQF 321
            A L  + + +S+LGGGH+LC H+++AR MA  QI + + L D        +HL Y   Q G  + A K +    R+A   + E L K    A+ +
Sbjct:  159 AALVTLNAYVSTLGGGHFLCKHINQARLMARLQIAISVGLQDPILRSKCRIHLAYNAIQIGQFRRAFKIIRREARVAEELESEELQKVCHAAKTY 253
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BLAST of mRNA_M-pyrifera_M_contig66258.16080.1 vs. uniprot
Match: A0A024TBA3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBA3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.220e-5
Identity = 39/138 (28.26%), Postives = 65/138 (47.10%), Query Frame = 1 
Query:    1 WGYRLNLMARMQAGLRNVVSLISSLGGGHYLCHHLDEARKMAHYQIKMLLMLGDEDGARHALLHLVYLDAQSGMHKSATKRLSMVKRLARIHDDEGLLKAAEHAQQFVD----ISKAVDPHDPSNPFRHHGDDLYRFR 402
            W YR+         L    + IS+LGGG++LC HL++A+ MA  QI +   L D        ++L Y     G  K A + ++   + A I   E +      AQ ++D    + +++  H+P++  R   D+ YR R
Sbjct:   67 WVYRVTRFTNAVVSLVTANAYISTLGGGYFLCRHLNQAKLMAQLQICVSQGLQDPILTSKCRINLAYGAMAQGKFKRAQRIITDETKRAHILRSEEMHSVCHAAQVYLDKTWDLHQSILVHEPTDTTRV-VDEYYRQR 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66258.16080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F0X1K7_9STRA1.160e-632.63Uncharacterized protein AlNc14C637G12314 n=1 Tax=A... [more]
A0A024GVS3_9STRA7.500e-633.68Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A024TBA3_9STRA3.220e-528.26Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66258contigM-pyrifera_M_contig66258:714..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010270.1
Exons1
Model size402
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.4380538-CDS-M-pyrifera_M_contig66258:713..10941622816552.4380538-CDS-M-pyrifera_M_contig66258:713..1094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66258 714..1094 -
1692278042.5195823-CDS-M-pyrifera_M_contig66258:713..10941692278042.5195823-CDS-M-pyrifera_M_contig66258:713..1094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66258 714..1094 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.4494736-UTR-M-pyrifera_M_contig66258:1094..11151622816552.4494736-UTR-M-pyrifera_M_contig66258:1094..1115Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66258 1095..1115 -
1692278042.5331604-UTR-M-pyrifera_M_contig66258:1094..11151692278042.5331604-UTR-M-pyrifera_M_contig66258:1094..1115Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66258 1095..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66258.16080.1prot_M-pyrifera_M_contig66258.16080.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66258 714..1094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66258.16080.1

>prot_M-pyrifera_M_contig66258.16080.1 ID=prot_M-pyrifera_M_contig66258.16080.1|Name=mRNA_M-pyrifera_M_contig66258.16080.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MARMQAGLRNVVSLISSLGGGHYLCHHLDEARKMAHYQIKMLLMLGDEDG
ARHALLHLVYLDAQSGMHKSATKRLSMVKRLARIHDDEGLLKAAEHAQQF
VDISKAVDPHDPSNPFRHHGDDLYRFR
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mRNA from alignment at M-pyrifera_M_contig66258:714..1115-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66258.16080.1 ID=mRNA_M-pyrifera_M_contig66258.16080.1|Name=mRNA_M-pyrifera_M_contig66258.16080.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig66258:714..1115- (Macrocystis pyrifera P11B4 male)
TGGGGGTACAGGTTGAATTTGATGGCCCGTATGCAAGCTGGATTGAGAAA
TGTAGTGTCGCTCATTTCTTCTCTTGGAGGTGGGCATTACCTGTGTCATC
ACTTGGATGAAGCACGAAAGATGGCACACTATCAAATTAAAATGTTACTC
ATGTTAGGAGATGAAGATGGAGCAAGACATGCGTTGTTGCATCTCGTGTA
CTTGGATGCTCAAAGTGGAATGCACAAGAGTGCTACGAAACGGCTTTCTA
TGGTAAAACGACTTGCACGGATACATGATGATGAAGGACTCCTCAAAGCA
GCAGAACATGCACAACAATTTGTTGATATTTCCAAAGCAGTTGATCCTCA
CGATCCTTCCAATCCTTTCAGGCACCATGGAGATGATTTATATCGCTTTC
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66258:714..1115-

>mRNA_M-pyrifera_M_contig66258.16080.1 ID=mRNA_M-pyrifera_M_contig66258.16080.1|Name=mRNA_M-pyrifera_M_contig66258.16080.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig66258:714..1115- (Macrocystis pyrifera P11B4 male)
ATGGCCCGTATGCAAGCTGGATTGAGAAATGTAGTGTCGCTCATTTCTTC
TCTTGGAGGTGGGCATTACCTGTGTCATCACTTGGATGAAGCACGAAAGA
TGGCACACTATCAAATTAAAATGTTACTCATGTTAGGAGATGAAGATGGA
GCAAGACATGCGTTGTTGCATCTCGTGTACTTGGATGCTCAAAGTGGAAT
GCACAAGAGTGCTACGAAACGGCTTTCTATGGTAAAACGACTTGCACGGA
TACATGATGATGAAGGACTCCTCAAAGCAGCAGAACATGCACAACAATTT
GTTGATATTTCCAAAGCAGTTGATCCTCACGATCCTTCCAATCCTTTCAG
GCACCATGGAGATGATTTATATCGCTTTCGAATGGCCCGTATGCAAGCTG
GATTGAGAAATGTAGTGTCGCTCATTTCTTCTCTTGGAGGTGGGCATTAC
CTGTGTCATCACTTGGATGAAGCACGAAAGATGGCACACTATCAAATTAA
AATGTTACTCATGTTAGGAGATGAAGATGGAGCAAGACATGCGTTGTTGC
ATCTCGTGTACTTGGATGCTCAAAGTGGAATGCACAAGAGTGCTACGAAA
CGGCTTTCTATGGTAAAACGACTTGCACGGATACATGATGATGAAGGACT
CCTCAAAGCAGCAGAACATGCACAACAATTTGTTGATATTTCCAAAGCAG
TTGATCCTCACGATCCTTCCAATCCTTTCAGGCACCATGGAGATGATTTA
TATCGCTTTCGA
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