mRNA_M-pyrifera_M_contig6619.16066.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6619.16066.1
Unique NamemRNA_M-pyrifera_M_contig6619.16066.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6619.16066.1 vs. uniprot
Match: D8LKN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN4_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.020e-16
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 LAQQSLNAKHEEESQRLQGVIESLRLEGASRDGAVRQAE--QASVDLEEQVEGLLRDAGTLEHRLVGAQQERDEAVARCSDLEGEVQRL---SVEARDAAE 288
            LAQ++L A H+EE  RL+ V+ESLR E  S   A RQA   +A+   +EQVE  LRDAG+LEHRLVG QQERDEAVAR S LE + +RL   +VE+R+AAE
Sbjct:   89 LAQENLKASHQEECARLEAVVESLRQE-VSASEAQRQASAAEAASKSQEQVESFLRDAGSLEHRLVGVQQERDEAVARASQLEEQARRLEEAAVESREAAE 188
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BLAST of mRNA_M-pyrifera_M_contig6619.16066.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.810e-15
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 LAQQSLNAKHEEESQRLQGVIESLRLEGASRDGAVRQAE--QASVDLEEQVEGLLRDAGTLEHRLVGAQQERDEAVARCSDLEGEVQRLS---VEARDAAEGK 294
            LAQ++L A H+EE  RL+ VI+SLR E  S   A RQA   +A+   +EQVE LLRDAG LEHRLVG QQERDEAVA+ S LE + +RL    VE+R+AAE +
Sbjct:  137 LAQENLKALHQEECARLEAVIDSLRQE-ISASEAQRQASAAEAASKSQEQVESLLRDAGLLEHRLVGVQQERDEAVAQASQLEEQARRLEEAVVESREAAEAR 238
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6619.16066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKN4_ECTSI2.020e-1658.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSR4_9PHAE1.810e-1557.28GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6619contigM-pyrifera_M_contig6619:1033..3109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size843
Cds size843
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6619.16066.1prot_M-pyrifera_M_contig6619.16066.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6619 1033..3109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816551.518464-CDS-M-pyrifera_M_contig6619:1032..15421622816551.518464-CDS-M-pyrifera_M_contig6619:1032..1542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6619 1033..1542 -
1692278041.9524965-CDS-M-pyrifera_M_contig6619:1032..15421692278041.9524965-CDS-M-pyrifera_M_contig6619:1032..1542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6619 1033..1542 -
1622816551.530183-CDS-M-pyrifera_M_contig6619:1914..22111622816551.530183-CDS-M-pyrifera_M_contig6619:1914..2211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6619 1915..2211 -
1692278041.9618847-CDS-M-pyrifera_M_contig6619:1914..22111692278041.9618847-CDS-M-pyrifera_M_contig6619:1914..2211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6619 1915..2211 -
1622816551.5416663-CDS-M-pyrifera_M_contig6619:3073..31091622816551.5416663-CDS-M-pyrifera_M_contig6619:3073..3109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6619 3074..3109 -
1692278041.9698613-CDS-M-pyrifera_M_contig6619:3073..31091692278041.9698613-CDS-M-pyrifera_M_contig6619:3073..3109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6619 3074..3109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6619.16066.1

>prot_M-pyrifera_M_contig6619.16066.1 ID=prot_M-pyrifera_M_contig6619.16066.1|Name=mRNA_M-pyrifera_M_contig6619.16066.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=281bp
LAQQSLNAKHEEESQRLQGVIESLRLEGASRDGAVRQAEQASVDLEEQVE
GLLRDAGTLEHRLVGAQQERDEAVARCSDLEGEVQRLSVEARDAAEGKAG
EVGRLEAERESSESLQNLVAESAKERDEALAELGGARAELEMFECRTQEI
AANVAVVERERDEAKAEALALKGELDELRSELEVFESRADGAESRADGAA
ANVAAVEAERDEAVAKVVAAKGELDGLKAALEAFESRADGNAAKVVVVER
ERDAAMAEVVGLKEELEGARAELEREREAVA
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mRNA from alignment at M-pyrifera_M_contig6619:1033..3109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6619.16066.1 ID=mRNA_M-pyrifera_M_contig6619.16066.1|Name=mRNA_M-pyrifera_M_contig6619.16066.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2077bp|location=Sequence derived from alignment at M-pyrifera_M_contig6619:1033..3109- (Macrocystis pyrifera P11B4 male)
CTTGCTCAACAGTCCCTCAACGCCAAGCACGAGGAGGTACGTAGGGGTTT
CCGTCCGGCTGCAAGCAACATTTAAACGGGGGGGGGGGGGGGGGGGGGGG
GGGGAAACCCCCCCCCGAAAGGGGGAAAGGAGAGAACGGGCGGGGGGGTG
GGGGAAGAAAGACCCCACGTGGCACGGCGGCCCTTTNNNNNNNNNNCGCC
CGCTCACCGCGCGCCGCCCCCCCACGCAGGTGCAGGAGGGGGGGTGGGGG
CGGGGGTGCGGCGGGGAGGGCAGGGGCGGGGGGGGGGGGGGGGGGGGGGG
GGGGGTGAGGGAGATATATCGCCCAGAAAGGCGGTAATGTGAAGCACGTC
GAGGTGTTGAGCGATCAAAGTCCCGCCGTTAGCATGCGGTCCTTTCTCTC
TGTGTCTGTCTCTCCCCCCCCTGCCTCCCTCCCTCACTCCCTCCCTGCCT
CTCCCGAACCCCCATAAGCCCAAAGCCTCCCGACTGGCGACCTTTCCAGT
ACTGAGACAGCACTTGACAAATTGAGAGTTGAACAGTTTTCGGCTCGATG
TTTTGCACCATAAACATGAGAATATCATACTGAAATTAGTGTAGGACACA
ACCCTGCCTCACAGGTCAATTTGACCCCTTTTTTTTTACTGGCAACAAGA
ATATTCTCCACTAGTTTCAAATTGTTTTTCTCCCGCAAGATGATTTTACA
GCGCTGAAGGGGTCACGTAACCCCTTAAGTACTGCAACCATTGTTTCGGG
ACAAACTACTTGGGAGTTAGTGTGGGATAATTTTTTCCAATAGTAAAAGG
GTGAGCTTGCCCCCAAAATACTGTCCATCGCGTACTTTTATATCGGGATG
CCTCTTTTCTGCCGTCTGCATCTGCATCATCCTTTGCCCCCCCTCCAGGA
ATCCCAGCGGCTTCAGGGTGTGATTGAGTCCCTACGGCTCGAGGGGGCGA
GCCGCGACGGCGCTGTTCGTCAGGCAGAGCAGGCGTCTGTCGACCTCGAA
GAGCAGGTGGAAGGGCTTCTGAGGGACGCAGGGACGCTGGAGCACCGCCT
TGTCGGCGCGCAGCAGGAGCGAGACGAGGCAGTGGCCCGCTGTTCTGATC
TGGAGGGGGAGGTCCAGCGCCTTAGCGTTGAGGCACGGGACGCGGCCGAG
GGCAAGGCGGGGGAGGTGGGGCGCCTCGAAGCGGAGCGGGAGTCTGTACG
GGTCGAGCTCGAGCAGCAGTACGAGCAGCAGCGAGAAAAGCAGCAGGAGC
AGCAACAGGAGAAGCAGCGAGAGCAGCTGGAGTCTTTGCGGGTTGAGCTC
GAGCAGCAGCAGGAGCAGCAACAGGAGCAGCAGCAGCAGCAGCTGGAATC
TTTGCGCGTTGAGCTCAAGCAGCAGCAGGAACGACAGCGGGAGCAGCGGC
TGGAGCAGCAGCAGGGGTTGGAGCAACAACAGCAAAGCCTGGAACAGCAG
CAAAGCCTGGAACAGCAACAGAAGCTAAAGCTGGAGCAGGCGCTCGCCGA
TGCGCTGGAGGAGTCGGAGACGCTTCGGCGCGAACTCGAGGAGGCCCGGA
CCGCCGAGGACGGCAAGTCCGAGTCCCTGCAAAACCTTGTGGCGGAGTCA
GCGAAGGAACGCGATGAGGCGTTGGCGGAGCTGGGGGGCGCTAGGGCCGA
GTTGGAGATGTTCGAGTGTCGGACACAAGAGATCGCGGCGAATGTCGCGG
TTGTTGAGCGGGAGAGGGACGAGGCGAAAGCCGAAGCATTGGCGCTGAAG
GGCGAGCTGGACGAGCTCAGGTCCGAGCTGGAGGTGTTCGAGTCGCGGGC
GGACGGTGCTGAGTCGCGGGCCGACGGCGCTGCCGCGAATGTGGCTGCTG
TGGAGGCGGAGAGGGACGAGGCGGTGGCCAAGGTCGTGGCTGCGAAGGGG
GAGCTGGATGGGCTTAAGGCTGCGCTGGAGGCGTTTGAGTCGCGAGCGGA
TGGGAACGCGGCGAAGGTTGTGGTTGTGGAGCGGGAGAGAGATGCAGCGA
TGGCCGAGGTGGTTGGTTTGAAGGAAGAGCTCGAGGGAGCTAGGGCGGAA
TTGGAGCGGGAGAGGGAGGCGGTGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6619:1033..3109-

>mRNA_M-pyrifera_M_contig6619.16066.1 ID=mRNA_M-pyrifera_M_contig6619.16066.1|Name=mRNA_M-pyrifera_M_contig6619.16066.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1686bp|location=Sequence derived from alignment at M-pyrifera_M_contig6619:1033..3109- (Macrocystis pyrifera P11B4 male)
CTTGCTCAACAGTCCCTCAACGCCAAGCACGAGGAGCTTGCTCAACAGTC
CCTCAACGCCAAGCACGAGGAGGAATCCCAGCGGCTTCAGGGTGTGATTG
AGTCCCTACGGCTCGAGGGGGCGAGCCGCGACGGCGCTGTTCGTCAGGCA
GAGCAGGCGTCTGTCGACCTCGAAGAGCAGGTGGAAGGGCTTCTGAGGGA
CGCAGGGACGCTGGAGCACCGCCTTGTCGGCGCGCAGCAGGAGCGAGACG
AGGCAGTGGCCCGCTGTTCTGATCTGGAGGGGGAGGTCCAGCGCCTTAGC
GTTGAGGCACGGGACGCGGCCGAGGGCAAGGCGGGGGAGGTGGGGCGCCT
CGAAGCGGAGCGGGAGTCTGAATCCCAGCGGCTTCAGGGTGTGATTGAGT
CCCTACGGCTCGAGGGGGCGAGCCGCGACGGCGCTGTTCGTCAGGCAGAG
CAGGCGTCTGTCGACCTCGAAGAGCAGGTGGAAGGGCTTCTGAGGGACGC
AGGGACGCTGGAGCACCGCCTTGTCGGCGCGCAGCAGGAGCGAGACGAGG
CAGTGGCCCGCTGTTCTGATCTGGAGGGGGAGGTCCAGCGCCTTAGCGTT
GAGGCACGGGACGCGGCCGAGGGCAAGGCGGGGGAGGTGGGGCGCCTCGA
AGCGGAGCGGGAGTCTTCCGAGTCCCTGCAAAACCTTGTGGCGGAGTCAG
CGAAGGAACGCGATGAGGCGTTGGCGGAGCTGGGGGGCGCTAGGGCCGAG
TTGGAGATGTTCGAGTGTCGGACACAAGAGATCGCGGCGAATGTCGCGGT
TGTTGAGCGGGAGAGGGACGAGGCGAAAGCCGAAGCATTGGCGCTGAAGG
GCGAGCTGGACGAGCTCAGGTCCGAGCTGGAGGTGTTCGAGTCGCGGGCG
GACGGTGCTGAGTCGCGGGCCGACGGCGCTGCCGCGAATGTGGCTGCTGT
GGAGGCGGAGAGGGACGAGGCGGTGGCCAAGGTCGTGGCTGCGAAGGGGG
AGCTGGATGGGCTTAAGGCTGCGCTGGAGGCGTTTGAGTCGCGAGCGGAT
GGGAACGCGGCGAAGGTTGTGGTTGTGGAGCGGGAGAGAGATGCAGCGAT
GGCCGAGGTGGTTGGTTTGAAGGAAGAGCTCGAGGGAGCTAGGGCGGAAT
TGGAGCGGGAGAGGGAGGCGGTGGCTTCCGAGTCCCTGCAAAACCTTGTG
GCGGAGTCAGCGAAGGAACGCGATGAGGCGTTGGCGGAGCTGGGGGGCGC
TAGGGCCGAGTTGGAGATGTTCGAGTGTCGGACACAAGAGATCGCGGCGA
ATGTCGCGGTTGTTGAGCGGGAGAGGGACGAGGCGAAAGCCGAAGCATTG
GCGCTGAAGGGCGAGCTGGACGAGCTCAGGTCCGAGCTGGAGGTGTTCGA
GTCGCGGGCGGACGGTGCTGAGTCGCGGGCCGACGGCGCTGCCGCGAATG
TGGCTGCTGTGGAGGCGGAGAGGGACGAGGCGGTGGCCAAGGTCGTGGCT
GCGAAGGGGGAGCTGGATGGGCTTAAGGCTGCGCTGGAGGCGTTTGAGTC
GCGAGCGGATGGGAACGCGGCGAAGGTTGTGGTTGTGGAGCGGGAGAGAG
ATGCAGCGATGGCCGAGGTGGTTGGTTTGAAGGAAGAGCTCGAGGGAGCT
AGGGCGGAATTGGAGCGGGAGAGGGAGGCGGTGGCT
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