mRNA_M-pyrifera_M_contig6618.16065.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6618.16065.1
Unique NamemRNA_M-pyrifera_M_contig6618.16065.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: A0A6H5KHW9_9PHAE (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHW9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.200e-27
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAM 192
            GKAAVDV+GNPLGKS GSFVQQGLFLATGSLQASTPYLGGVLL VITTWLFAADSLS KFE AM
Sbjct:  626 GKAAVDVVGNPLGKSTGSFVQQGLFLATGSLQASTPYLGGVLLAVITTWLFAADSLSKKFEAAM 689
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: A0A7S2SC41_9STRA (ADP,ATP carrier protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC41_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.760e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMA 195
            GKAAVDVIGNPLGKS GS +QQ L L+ GSL A+TPYL G+L VVI  W+ +A SLS +FE+AMA
Sbjct:  108 GKAAVDVIGNPLGKSGGSMIQQVLLLSLGSLAAATPYLAGILFVVIAAWIRSAKSLSGQFEEAMA 172
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: Q8WH67_GALSU (ADP,ATP carrier protein (Fragment) n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q8WH67_GALSU)

HSP 1 Score: 88.6 bits (218), Expect = 2.440e-18
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMAKAVVAE 213
            GKAA+DVIGNP+GKS GSF+QQGL  A GSL ASTPYL  +L V++  W+ AA SL  +F++AM ++ VAE
Sbjct:  579 GKAAIDVIGNPMGKSGGSFIQQGLIFAVGSLAASTPYLAFILFVIVGMWIAAARSLDKQFQEAMKRSEVAE 649
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: W7TSX0_9STRA (ADP,ATP carrier protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSX0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.870e-16
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMAKAVVAEE 216
            GKAA+DVIGNPLGKS GSF+QQ L L  GSL ASTPYL G++ +++  W+ AA SLS +F++ MA+   A E
Sbjct:  505 GKAAIDVIGNPLGKSGGSFIQQILILILGSLSASTPYLAGIIFLIVGAWIKAAASLSKQFKEKMAQNPDAAE 576
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: A0A6V1LEJ0_HETAK (ADP,ATP carrier protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LEJ0_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 3.470e-16
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMAKA 201
            GKAAVDVIGNPLGKS GSFVQQ +  A GSL ASTPYL  VL+ +++ W++AA +L+  F +AMAK+
Sbjct:  485 GKAAVDVIGNPLGKSGGSFVQQFMIFAFGSLAASTPYLAIVLVAIVSMWIYAAKALNKLFIEAMAKS 551
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: A0A7S0HGL0_9EUKA (ADP,ATP carrier protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HGL0_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 4.770e-16
Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMAKAVVAE 213
            GKAAVDVIGNPLGKS GSF+QQ +    GSL ASTPYL  VL +VI  W+ +A SLS  FEDAMA   + E
Sbjct:  503 GKAAVDVIGNPLGKSGGSFIQQFMIFGFGSLAASTPYLAAVLGIVIFAWIRSARSLSVLFEDAMANEEMEE 573
[Close]
BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: A0A7J7IHC8_9RHOD (ADP,ATP carrier protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHC8_9RHOD)

HSP 1 Score: 81.6 bits (200), Expect = 6.610e-16
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMAK 198
            GKAA+DVIGNPLGKS GSF+QQ L  ATGSL ASTP+L  +L  +I  WL AA SL  +F +AMA+
Sbjct:  582 GKAAIDVIGNPLGKSGGSFIQQALIFATGSLAASTPFLAVILGTIILMWLAAARSLDRQFTEAMAR 647
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: E6Y2N7_EUGGR (ADP,ATP carrier protein (Fragment) n=1 Tax=Euglena gracilis TaxID=3039 RepID=E6Y2N7_EUGGR)

HSP 1 Score: 81.3 bits (199), Expect = 8.590e-16
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMA 195
            GKAAVDVIGNPLGKS GSF+QQGL    GSL  STPYLG +L ++I  WL AA SL+ +FE+A A
Sbjct:  429 GKAAVDVIGNPLGKSGGSFIQQGLIFGLGSLAVSTPYLGVILGLIIMGWLSAARSLNVQFEEADA 493
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BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: A0A2V3J1K2_9FLOR (ADP,ATP carrier protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1K2_9FLOR)

HSP 1 Score: 81.3 bits (199), Expect = 9.000e-16
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMAK--AVVAEE 216
            GKAAVDVIGNPLGKS GSF+QQ L  + GSL ASTPYL  +L  +I  WL AA SL  +F D M K  A VAE+
Sbjct:  565 GKAAVDVIGNPLGKSGGSFIQQILIFSMGSLAASTPYLAVILFAIIGMWLAAAKSLDKQFSDFMMKETATVAEK 638
[Close]
BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Match: A0A1X6NML6_PORUM (ADP,ATP carrier protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NML6_PORUM)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-15
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWLFAADSLSSKFEDAMAKAVVA 210
            GKAA+DVIGNPLGKS GSFVQQ L  ATGSL ASTPYL  +L+ +I  WL AA SL  +F   M K   A
Sbjct:  653 GKAAIDVIGNPLGKSGGSFVQQVLIFATGSLAASTPYLAVILVGIIGMWLVAAKSLDKQFSAFMRKETAA 722
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6618.16065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHW9_9PHAE2.200e-2792.19ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SC41_9STRA5.760e-1967.69ADP,ATP carrier protein n=1 Tax=Rhizochromulina ma... [more]
Q8WH67_GALSU2.440e-1860.56ADP,ATP carrier protein (Fragment) n=2 Tax=Galdier... [more]
W7TSX0_9STRA1.870e-1658.33ADP,ATP carrier protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6V1LEJ0_HETAK3.470e-1662.69ADP,ATP carrier protein n=1 Tax=Heterosigma akashi... [more]
A0A7S0HGL0_9EUKA4.770e-1663.38ADP,ATP carrier protein n=1 Tax=Phaeocystis antarc... [more]
A0A7J7IHC8_9RHOD6.610e-1663.64ADP,ATP carrier protein n=1 Tax=Cyanidiococcus yan... [more]
E6Y2N7_EUGGR8.590e-1666.15ADP,ATP carrier protein (Fragment) n=1 Tax=Euglena... [more]
A0A2V3J1K2_9FLOR9.000e-1662.16ADP,ATP carrier protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NML6_PORUM1.240e-1562.86ADP,ATP carrier protein n=1 Tax=Porphyra umbilical... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6618contigM-pyrifera_M_contig6618:7140..8562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue4.2e-23
Seed eggNOG ortholog2880.D7FNV6
Preferred nameNTT1
KEGG koko:K03301
KEGG TC2.A.12
Hectar predicted targeting categoryother localisation
GOsGO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005347,GO:0005471,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006862,GO:0008150,GO:0008509,GO:0008514,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015075,GO:0015215,GO:0015216,GO:0015217,GO:0015238,GO:0015291,GO:0015297,GO:0015301,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0022804,GO:0022857,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0034220,GO:0042170,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051503,GO:0055085,GO:0071702,GO:0071705,GO:0098656,GO:0099516,GO:1901264,GO:1901505,GO:1901679
EggNOG free text desc.ATP:ADP antiporter activity
EggNOG OGs2QSRY@2759,COG3202@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size312
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6618.16065.1prot_M-pyrifera_M_contig6618.16065.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6618 7141..8562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816551.4497778-CDS-M-pyrifera_M_contig6618:7140..72721622816551.4497778-CDS-M-pyrifera_M_contig6618:7140..7272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6618 7141..7272 -
1692278041.9246917-CDS-M-pyrifera_M_contig6618:7140..72721692278041.9246917-CDS-M-pyrifera_M_contig6618:7140..7272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6618 7141..7272 -
1622816551.465212-CDS-M-pyrifera_M_contig6618:7554..76651622816551.465212-CDS-M-pyrifera_M_contig6618:7554..7665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6618 7555..7665 -
1692278041.9355886-CDS-M-pyrifera_M_contig6618:7554..76651692278041.9355886-CDS-M-pyrifera_M_contig6618:7554..7665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6618 7555..7665 -
1622816551.4784248-CDS-M-pyrifera_M_contig6618:8496..85621622816551.4784248-CDS-M-pyrifera_M_contig6618:8496..8562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6618 8497..8562 -
1692278041.9437299-CDS-M-pyrifera_M_contig6618:8496..85621692278041.9437299-CDS-M-pyrifera_M_contig6618:8496..8562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6618 8497..8562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6618.16065.1

>prot_M-pyrifera_M_contig6618.16065.1 ID=prot_M-pyrifera_M_contig6618.16065.1|Name=mRNA_M-pyrifera_M_contig6618.16065.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
GKAAVDVIGNPLGKSAGSFVQQGLFLATGSLQASTPYLGGVLLVVITTWL
FAADSLSSKFEDAMAKAVVAEEENGNDDDDDGGDGGDGDGTPLLPPSVPP
RAG
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mRNA from alignment at M-pyrifera_M_contig6618:7140..8562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6618.16065.1 ID=mRNA_M-pyrifera_M_contig6618.16065.1|Name=mRNA_M-pyrifera_M_contig6618.16065.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1423bp|location=Sequence derived from alignment at M-pyrifera_M_contig6618:7140..8562- (Macrocystis pyrifera P11B4 male)
GGGAAAGCCGCGGTGGACGTAATTGGAAACCCCCTTGGGAAGTCGGCGGG
GTCGTTCGTGCAGCAGGTGGGACGATGGCATGTGCTGTAGCAAGTACTGT
AGGTCCCTTCGCTTGCTGGGACTCTTTGACCGCTTTTCAAGCCCACGACG
GGACACGTCTTCCCAGTTAAGTGCGCTAGGGCCGTTTTTTGTGCATTTCG
CTTTTACTGCGTTCTTTATCAAATATGAAAGAGACAACTCAGCTGTGAAG
GTGAGGGATTTTCGTCGAAAGTTATCCCTCGCAAGGTGCGTGTCTGTGAT
ACTTCCATCGCGCATGCTACGGCCTGTATGTGACCTCATGAAGGATGCAT
TTTTGTGATGTTGTGCTTTGTTGTCATCTCGTTGCCCTATTTTTTGCTGA
GAACAGGATGATGCCTCCTTAGACCGCGATCGCAGGCACGTATTATATTC
CTGGTACTTTAGAGCCTATCAACAAAGCTGTACTGCGGTACGATGAGTGT
TGAGAGGAATCGCTATGTTGGGGTGTTCATGCCGGGTACAGGCGAGGGCT
TGCCATATCCGTAAATTGAGCCACTCATGGATACATGTCGTTTTCGGAGT
GGAGGTGACTCTGATACCTGCACCTTTGTATTTCGTTTTTCGATTCATGT
TTGGTTTCTTTCTCAAACCTTTTGATGTTGCGTTTGATTTTCTGTTCACT
GTACTCACGGGAACTGCGCCGAGGGAATGGCGCCCAACACGTGCATAGGT
TAATTTCGTTTTTTCGGTGGTTGGCTTGCTTTCAATGCGAGTGCGCGCGG
TCGGCTGGTGCGACGCTACGACTTTACGTACGTAGTCTACTTTTTTTTGT
GGCGCTGAGACTAAAGAAATCGCGGAACTCGTTTCGGCCTTACGCAGGGA
CTGTTTCTGGCGACGGGATCTCTCCAAGCGTCCACGCCGTACCTAGGAGG
CGTTTTGTTGGTGGTAATTACCACCTGGCTGTTCGCGGCGGACTCCTTAT
CCTCGAAGGTGAGAGCGAAAGGATTTCCATATATATGACAGGGGTTTCCA
TGTGAGGGGAGCGGACTTTTGTATGAGGAAATTATGTCGTTAACTGTGAG
GCGTGACAAGTTTGTGCGTTTTGCGACTTTGCGTTCATTGCCCATGTCGT
ACATTCTAGCGCTGCCGACGTTTACGTACCTATTGCGTCACGACCTGACT
ACGTGTAGCGGGAACTCATACACCTTCGCCTCCTTTCCGCTGCTGGTGCT
GGCTCTTTCTCTGCTACCCGTGGCCGCGTCCTGCCTCCAGTTCGAGGACG
CGATGGCCAAGGCTGTCGTGGCAGAGGAAGAGAACGGAAATGACGATGAT
GATGATGGTGGTGATGGTGGTGATGGTGATGGCACACCGTTACTCCCTCC
TTCGGTTCCACCAAGAGCAGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6618:7140..8562-

>mRNA_M-pyrifera_M_contig6618.16065.1 ID=mRNA_M-pyrifera_M_contig6618.16065.1|Name=mRNA_M-pyrifera_M_contig6618.16065.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig6618:7140..8562- (Macrocystis pyrifera P11B4 male)
GGGAAAGCCGCGGTGGACGTAATTGGAAACCCCCTTGGGAAGTCGGCGGG
GTCGTTCGTGCAGCAGGGGAAAGCCGCGGTGGACGTAATTGGAAACCCCC
TTGGGAAGTCGGCGGGGTCGTTCGTGCAGCAGGGACTGTTTCTGGCGACG
GGATCTCTCCAAGCGTCCACGCCGTACCTAGGAGGCGTTTTGTTGGTGGT
AATTACCACCTGGCTGTTCGCGGCGGACTCCTTATCCTCGAAGGGACTGT
TTCTGGCGACGGGATCTCTCCAAGCGTCCACGCCGTACCTAGGAGGCGTT
TTGTTGGTGGTAATTACCACCTGGCTGTTCGCGGCGGACTCCTTATCCTC
GAAGTTCGAGGACGCGATGGCCAAGGCTGTCGTGGCAGAGGAAGAGAACG
GAAATGACGATGATGATGATGGTGGTGATGGTGGTGATGGTGATGGCACA
CCGTTACTCCCTCCTTCGGTTCCACCAAGAGCAGGGTTCGAGGACGCGAT
GGCCAAGGCTGTCGTGGCAGAGGAAGAGAACGGAAATGACGATGATGATG
ATGGTGGTGATGGTGGTGATGGTGATGGCACACCGTTACTCCCTCCTTCG
GTTCCACCAAGAGCAGGG
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