mRNA_M-pyrifera_M_contig6617.16063.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig6617.16063.1
Unique Name	mRNA_M-pyrifera_M_contig6617.16063.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: D8LER3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER3_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.220e-21
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LFQASL PYLAFL+ LSRKETKTPEGGTFGFAFLLVFVVATIPAGIY +
Sbjct:   42 LFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAK 90

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0A6H5KGT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.460e-20
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LFQASLLPYLAFL+ LSRKETKTPEGGTFGFAFLLVFVVATIPAGIY +
Sbjct:  150 LFQASLLPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAK 198

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0A835YND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.840e-17
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LFQASL PYLAFL+FLS+ ETKTP+GGTF F FLLVFV ATIPAGI  +
Sbjct:   91 LFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAK 139

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0A7S4FPV4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FPV4_9EUGL)

HSP 1 Score: 73.2 bits (178), Expect = 6.850e-14
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LFQASL+PYLAFLFFL R  TK P G   GFAFLLVFV ATIPAGIY +
Sbjct:  136 LFQASLVPYLAFLFFLGRPSTKLPAGAWRGFAFLLVFVFATIPAGIYAK 184

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0A1X6NWM6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWM6_PORUM)

HSP 1 Score: 70.9 bits (172), Expect = 2.630e-13
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LF ASL PYLAFL+FLSR ET  P+G   GFAFLLVFV ATIPAGIY +
Sbjct:  131 LFAASLFPYLAFLYFLSRPETGCPKGAYRGFAFLLVFVFATIPAGIYAK 179

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0A0G4H1D7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H1D7_9ALVE)

HSP 1 Score: 70.5 bits (171), Expect = 6.170e-13
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LF ASL PYLAFL+FL R+ETKTP+   FGF FLLVFV ATIPAGIY +
Sbjct:   88 LFAASLPPYLAFLYFLGREETKTPKLPLFGFWFLLVFVFATIPAGIYAK 136

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0A0G4G622_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G622_9ALVE)

HSP 1 Score: 68.6 bits (166), Expect = 2.940e-12
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LF +SL PYLAFL+FL R ETKTP    FGF FLLVFV +TIPAGIY +
Sbjct:   86 LFSSSLAPYLAFLWFLGRPETKTPPLALFGFRFLLVFVFSTIPAGIYAK 134

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: L1JDF4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDF4_GUITC)

HSP 1 Score: 63.2 bits (152), Expect = 9.770e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1

Query:    7 QASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            QASLLPYLAFL+FL+    KTP+   FGF FLL+FV+ATIP GI  +
Sbjct:    2 QASLLPYLAFLYFLNNNGAKTPKLSGFGFGFLLLFVIATIPTGIISK 48

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0A7R9TUR9_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TUR9_9VIRI)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-11
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1

Query:    1 LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            LFQA L PYL +L+FLSR ETKTP    FG  FLL+FV ATIPAGI  +
Sbjct:   35 LFQAGLAPYLGYLYFLSRPETKTPPLSNFGARFLLLFVFATIPAGIVAK 83

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BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Match: A0PCY3_GUITH (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0PCY3_GUITH)

HSP 1 Score: 65.1 bits (157), Expect = 2.540e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1

Query:    4 FQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE 147
            FQASLLPYLAFL+FL+    KTP+   FGF FLL+FV+ATIP GI  +
Sbjct:   94 FQASLLPYLAFLYFLNNNGAKTPKLSGFGFGFLLLFVIATIPTGIISK 141

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig6617.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LER3_ECTSI	1.220e-21	89.80	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KGT7_9PHAE	3.460e-20	91.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YND2_9STRA	6.840e-17	77.55	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S4FPV4_9EUGL	6.850e-14	75.51	Hypothetical protein n=1 Tax=Eutreptiella gymnasti...	[more]
A0A1X6NWM6_PORUM	2.630e-13	73.47	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]
A0A0G4H1D7_9ALVE	6.170e-13	73.47	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
A0A0G4G622_9ALVE	2.940e-12	69.39	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
L1JDF4_GUITC	9.770e-12	63.83	Uncharacterized protein n=1 Tax=Guillardia theta (...	[more]
A0A7R9TUR9_9VIRI	1.930e-11	65.31	Hypothetical protein (Fragment) n=1 Tax=Prasinoder...	[more]
A0PCY3_GUITH	2.540e-11	64.58	Uncharacterized protein (Fragment) n=1 Tax=Guillar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig6617	contig	M-pyrifera_M_contig6617:5337..5483 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	89.4
Seed ortholog evalue	5.2e-16
Seed eggNOG ortholog	2880.D8LER3
Hectar predicted targeting category	signal anchor
GOs	GO:0003674,GO:0003824,GO:0004103,GO:0004305,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0097164,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.	positive regulation of TORC1 signaling
EggNOG OGs	KOG2445@1,KOG2445@2759
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	147
Cds size	147
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816551.3382478-CDS-M-pyrifera_M_contig6617:5336..5483	1622816551.3382478-CDS-M-pyrifera_M_contig6617:5336..5483	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig6617 5337..5483 -
1692278041.8664584-CDS-M-pyrifera_M_contig6617:5336..5483	1692278041.8664584-CDS-M-pyrifera_M_contig6617:5336..5483	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig6617 5337..5483 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig6617.16063.1	prot_M-pyrifera_M_contig6617.16063.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig6617 5337..5483 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig6617:5337..5483-
coding sequence from alignment at M-pyrifera_M_contig6617:5337..5483-

protein sequence of mRNA_M-pyrifera_M_contig6617.16063.1

>prot_M-pyrifera_M_contig6617.16063.1 ID=prot_M-pyrifera_M_contig6617.16063.1|Name=mRNA_M-pyrifera_M_contig6617.16063.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
LFQASLLPYLAFLFFLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYGE

mRNA from alignment at M-pyrifera_M_contig6617:5337..5483-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig6617.16063.1 ID=mRNA_M-pyrifera_M_contig6617.16063.1|Name=mRNA_M-pyrifera_M_contig6617.16063.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig6617:5337..5483- (Macrocystis pyrifera P11B4 male)
CTGTTCCAGGCGTCGCTTCTGCCGTACCTGGCGTTCCTGTTCTTCTTGAG
CAGGAAGGAGACCAAGACGCCGGAGGGGGGAACGTTCGGCTTCGCGTTTC
TGCTCGTTTTCGTCGTTGCCACGATTCCGGCGGGGATCTACGGTGAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig6617:5337..5483-

>mRNA_M-pyrifera_M_contig6617.16063.1 ID=mRNA_M-pyrifera_M_contig6617.16063.1|Name=mRNA_M-pyrifera_M_contig6617.16063.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig6617:5337..5483- (Macrocystis pyrifera P11B4 male)
CTGTTCCAGGCGTCGCTTCTGCCGTACCTGGCGTTCCTGTTCTTCTTGAG
CAGGAAGGAGACCAAGACGCCGGAGGGGGGAACGTTCGGCTTCGCGTTTC
TGCTCGTTTTCGTCGTTGCCACGATTCCGGCGGGGATCTACGGTGAGCTG
TTCCAGGCGTCGCTTCTGCCGTACCTGGCGTTCCTGTTCTTCTTGAGCAG
GAAGGAGACCAAGACGCCGGAGGGGGGAACGTTCGGCTTCGCGTTTCTGC
TCGTTTTCGTCGTTGCCACGATTCCGGCGGGGATCTACGGTGAG