mRNA_M-pyrifera_M_contig66138.16058.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66138.16058.1
Unique NamemRNA_M-pyrifera_M_contig66138.16058.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66138.16058.1 vs. uniprot
Match: A0A7S0H3C4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H3C4_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 3.460e-14
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 1 
Query:    4 WIERWIAPFHVFCQDPTSLLPSIPSLRRAVRFCVALTIAASLGYIPGIGDSLGGQAFWAPLTVAFVAGDQLGGAYFTALRRMEGTIAGTMFGYLLFEWTNAGGDTGAAGRAVAVVVGLGVWAGLCFLVASHKTHGYAGIVAAFTAPIIAL 453
            WI   +  F+V    P +L P+   ++ A +  +A+ +++ L  +P    S    AFW PLT+AFV G  +G ++  +L RM+GT+ G + GY L   +N        G  +A+++ L +      L    + +GYAG+VAAFTA II L
Sbjct:  238 WILGMMEIFYV----PCNLKPN--GIKNAFKVSIAIMLSSLLVLVPEWRKSFD-NAFWGPLTIAFVMGKSVGASFVRSLLRMQGTVTGVILGYTLLRLSN--------GNEIAILLVLPIIVFFASLAKPSEQYGYAGVVAAFTAGIIVL 372
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BLAST of mRNA_M-pyrifera_M_contig66138.16058.1 vs. uniprot
Match: A0A1Y1IP48_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IP48_KLENI)

HSP 1 Score: 65.9 bits (159), Expect = 1.730e-9
Identity = 42/130 (32.31%), Postives = 63/130 (48.46%), Query Frame = 1 
Query:   64 PSIPSLRRAVRFCVALTIAASLGYIPGIGDSLGGQAFWAPLTVAFVAGDQLGGAYFTALRRMEGTIAGTMFGYLLFEWTNAGGDTGAAGRAVAVVVGLGVWAGLCFLVASHKTHGYAGIVAAFTAPIIAL 453
            P    L+   +   A+ +   LG I G         +WA +T+AF+ G   G ++  A  R++GT+AG ++GYL+    +        G  VAV   L  W  L   +   K +GY+G+VA FTA II L
Sbjct:  503 PDARKLKAGSKVACAVGVGGLLGIIAGRN-----YGYWAVVTIAFIIGGYQGTSFRAAWLRLQGTVAGAIYGYLVILVVH--------GHPVAVGALLVPWVALVTFIRYSKAYGYSGVVAGFTAAIIML 619
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BLAST of mRNA_M-pyrifera_M_contig66138.16058.1 vs. uniprot
Match: A0A7S0SLF9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SLF9_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 9.420e-9
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:  106 ALTIAASLGYIPGIGDSLGGQAFWAPLTVAFVA---GDQLGGAYFTALRRMEGTIAGTMFGYLLFEWTNAGGDTGAAGRAVAVVVGLGVWAGLCFLVASHKTHGYAGIVAAFTAPIIALSTP 462
            AL +A+S      +G +L G   WA LTV+FV    G  +GG++ TA+ RM+GT+ G +F +++         T A+G     ++ L  +  L   +  +  + YAG+VAAFTA I+AL  P
Sbjct:   45 ALKLASSAAVAGALGWALTGNGSWATLTVSFVGTREGSAVGGSFNTAMLRMQGTVIGALFAFVVVVVLPG---TLASGVGAGRLLLLAFFTFLTTYLRLNPEYSYAGVVAAFTAYIVALGVP 163
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BLAST of mRNA_M-pyrifera_M_contig66138.16058.1 vs. uniprot
Match: C1FHD2_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FHD2_MICCC)

HSP 1 Score: 62.4 bits (150), Expect = 2.710e-8
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 1 
Query:   88 AVRFCVALTIAASLGYIPGIGDSLGGQAFWAPLTVAFVAGDQ---LGGAYFTALRRMEGTIAGTMFGYLLFEWTNAGGDTGAAGRAVAVVVGLGVWAGLCFLVASHKTHGYAGIVAAFTAPIIALSTP 462
            A++   A  IAA +G+I     S      WA L V+ V   +   +GG++  AL RM+GTI G MF Y +        ++ A G  + +   L V+  LC  +  +  + YAG+VAAFTA ++AL  P
Sbjct:  480 AMKLSTACAIAAIVGWIVSDNGS------WAALAVSMVGTRESHAVGGSFNAALLRMQGTIFGAMFAYTIMSCVQGEHESWAGGARLIL---LAVFNFLCTFLRLNAEYSYAGVVAAFTAYVVALGIP 598
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BLAST of mRNA_M-pyrifera_M_contig66138.16058.1 vs. uniprot
Match: A0A7S0D1M6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D1M6_MICPS)

HSP 1 Score: 60.1 bits (144), Expect = 1.530e-7
Identity = 44/130 (33.85%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:   97 FCVALTIAASLGYIPGIGDSLGGQAFWAPLTVAFVA---GDQLGGAYFTALRRMEGTIAGTMFGYLLFEWTNAGGDTGAA-----GRAVAVVVGLGVWAGLCFLVASHKTHGYAGIVAAFTAPIIALSTP 462
            +   L+ AA++  +  IG +  G   WA +TVA V    G  +GG++  AL RM+GT+ G MF + L      GG+ GA      G ++  ++ L  +A     +  +    YAG+VAAFTA ++AL  P
Sbjct:    6 YATKLSFAAAVAGL--IGWATSGSGLWAAVTVAMVGTREGRAVGGSFNAALLRMQGTVIGAMFSFALVIVVT-GGEAGATNALALGASIGRLLLLAAFAFASAFLRLNPEFAYAGVVAAFTAYVVALGIP 132
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66138.16058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S0H3C4_9EUKA3.460e-1433.33Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A1Y1IP48_KLENI1.730e-932.31Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S0SLF9_9CHLO9.420e-935.25Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
C1FHD2_MICCC2.710e-834.38Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0D1M6_MICPS1.530e-733.85Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66138contigM-pyrifera_M_contig66138:760..1251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog227086.JGI_V11_81678
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Fusaric acid resistance protein-like
EggNOG OGs28KAA@1,2QSR1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.945685-CDS-M-pyrifera_M_contig66138:759..12511622816550.945685-CDS-M-pyrifera_M_contig66138:759..1251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66138 760..1251 +
1692278041.6491137-CDS-M-pyrifera_M_contig66138:759..12511692278041.6491137-CDS-M-pyrifera_M_contig66138:759..1251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66138 760..1251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66138.16058.1prot_M-pyrifera_M_contig66138.16058.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66138 760..1251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66138.16058.1

>prot_M-pyrifera_M_contig66138.16058.1 ID=prot_M-pyrifera_M_contig66138.16058.1|Name=mRNA_M-pyrifera_M_contig66138.16058.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
TWIERWIAPFHVFCQDPTSLLPSIPSLRRAVRFCVALTIAASLGYIPGIG
DSLGGQAFWAPLTVAFVAGDQLGGAYFTALRRMEGTIAGTMFGYLLFEWT
NAGGDTGAAGRAVAVVVGLGVWAGLCFLVASHKTHGYAGIVAAFTAPIIA
LSTPPYPPHSTPST
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mRNA from alignment at M-pyrifera_M_contig66138:760..1251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66138.16058.1 ID=mRNA_M-pyrifera_M_contig66138.16058.1|Name=mRNA_M-pyrifera_M_contig66138.16058.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig66138:760..1251+ (Macrocystis pyrifera P11B4 male)
ACATGGATTGAGAGATGGATTGCGCCATTCCATGTGTTTTGTCAGGATCC
AACCTCCTTGCTCCCCAGTATTCCTTCTCTCCGTCGTGCTGTTCGATTTT
GTGTGGCGCTCACAATCGCAGCTTCGTTGGGATATATTCCAGGGATTGGA
GATTCTCTGGGAGGCCAAGCATTTTGGGCACCTCTAACGGTCGCTTTCGT
GGCTGGTGACCAGCTTGGAGGGGCTTACTTCACAGCGTTGCGACGGATGG
AGGGGACGATTGCGGGAACAATGTTTGGGTACTTGTTGTTTGAGTGGACG
AATGCAGGAGGTGACACTGGTGCAGCGGGGAGAGCAGTGGCTGTTGTGGT
GGGGCTTGGGGTGTGGGCAGGGCTGTGTTTCCTCGTGGCTTCCCACAAGA
CACATGGGTATGCTGGGATTGTCGCAGCCTTTACTGCTCCCATCATTGCC
CTCTCCACCCCTCCATACCCTCCACATTCAACCCCTTCCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66138:760..1251+

>mRNA_M-pyrifera_M_contig66138.16058.1 ID=mRNA_M-pyrifera_M_contig66138.16058.1|Name=mRNA_M-pyrifera_M_contig66138.16058.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig66138:760..1251+ (Macrocystis pyrifera P11B4 male)
ACATGGATTGAGAGATGGATTGCGCCATTCCATGTGTTTTGTCAGGATCC
AACCTCCTTGCTCCCCAGTATTCCTTCTCTCCGTCGTGCTGTTCGATTTT
GTGTGGCGCTCACAATCGCAGCTTCGTTGGGATATATTCCAGGGATTGGA
GATTCTCTGGGAGGCCAAGCATTTTGGGCACCTCTAACGGTCGCTTTCGT
GGCTGGTGACCAGCTTGGAGGGGCTTACTTCACAGCGTTGCGACGGATGG
AGGGGACGATTGCGGGAACAATGTTTGGGTACTTGTTGTTTGAGTGGACG
AATGCAGGAGGTGACACTGGTGCAGCGGGGAGAGCAGTGGCTGTTGTGGT
GGGGCTTGGGGTGTGGGCAGGGCTGTGTTTCCTCGTGGCTTCCCACAAGA
CACATGGGTATGCTGGGATTGTCGCAGCCTTTACTGCTCCCATCATTGCC
CTCTCCACCCCTCCATACCCTCCACATTCAACCCCTTCCACCACATGGAT
TGAGAGATGGATTGCGCCATTCCATGTGTTTTGTCAGGATCCAACCTCCT
TGCTCCCCAGTATTCCTTCTCTCCGTCGTGCTGTTCGATTTTGTGTGGCG
CTCACAATCGCAGCTTCGTTGGGATATATTCCAGGGATTGGAGATTCTCT
GGGAGGCCAAGCATTTTGGGCACCTCTAACGGTCGCTTTCGTGGCTGGTG
ACCAGCTTGGAGGGGCTTACTTCACAGCGTTGCGACGGATGGAGGGGACG
ATTGCGGGAACAATGTTTGGGTACTTGTTGTTTGAGTGGACGAATGCAGG
AGGTGACACTGGTGCAGCGGGGAGAGCAGTGGCTGTTGTGGTGGGGCTTG
GGGTGTGGGCAGGGCTGTGTTTCCTCGTGGCTTCCCACAAGACACATGGG
TATGCTGGGATTGTCGCAGCCTTTACTGCTCCCATCATTGCCCTCTCCAC
CCCTCCATACCCTCCACATTCAACCCCTTCCACC
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