mRNA_M-pyrifera_M_contig66136.16057.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66136.16057.1
Unique NamemRNA_M-pyrifera_M_contig66136.16057.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: UPI000359CBB2 (cytoplasmic tRNA 2-thiolation protein 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359CBB2)

HSP 1 Score: 340 bits (873), Expect = 8.760e-114
Identity = 168/267 (62.92%), Postives = 201/267 (75.28%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP  C  CG + A+L+RPK G ALCKECFY+ FEEE+HH +   +LF  GE VAIGASGGKDSTVLAH M++LN RH+YGL+L LLS+DEGI GYRDDSL TV RN+ QY LPL +VSY++LYGW+MD IV  IG K+NCT CGVFRRQALDRGA+ +GADK+VTGHNADD AET ++N+L GD+ RL+R T++ TG             +G L       PR KP   +YEKEIV+YAY KKLDYF+TECIYSP A+RGFAR  IK
Sbjct:    1 MPRKCGSCGVKNAILKRPKTGDALCKECFYWAFEEEIHHTVLQAKLFSPGETVAIGASGGKDSTVLAHTMKVLNERHNYGLKLILLSVDEGITGYRDDSLETVKRNQQQYDLPLTIVSYEELYGWTMDAIVKQIGLKNNCTFCGVFRRQALDRGAMMLGADKIVTGHNADDIAETVIMNVLRGDIARLRRCTAITTG------------TDGYL-------PRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFARAYIK 248
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BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: A0A224YIE6_9ACAR (Cytoplasmic tRNA 2-thiolation protein 1 n=6 Tax=Ixodidae TaxID=6939 RepID=A0A224YIE6_9ACAR)

HSP 1 Score: 335 bits (860), Expect = 1.610e-112
Identity = 170/264 (64.39%), Postives = 200/264 (75.76%), Query Frame = 1 
Query:   10 LCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            LCS C S +AVL+RPK G ALCKECFY  FE EVH  I    LF+ G++VAI ASGGKDSTVLA+VM+LLN RH YGLRL LLSIDEGI GYRDDSL TV  NR +Y +PLEV+SYKDLYGWSMDEIVA IGR++NCT CGVFRRQALDRGA  +G +K+VTGHNADD AET L+N+L GD+ RL+R T++ TG             EGA       +PR+KP   +YEKEIV+YA+ KKL+YF+TECIYSP A+RG AR  +K
Sbjct:    3 LCSKCDSSRAVLKRPKTGDALCKECFYVAFETEVHETIVRAHLFQPGDYVAIAASGGKDSTVLAYVMKLLNERHKYGLRLVLLSIDEGITGYRDDSLKTVESNREEYGIPLEVLSYKDLYGWSMDEIVAQIGRRNNCTFCGVFRRQALDRGAAKLGVNKMVTGHNADDIAETVLMNVLRGDIARLQRCTAITTG------------SEGA-------IPRSKPFKYTYEKEIVMYAHFKKLNYFSTECIYSPNAYRGHARAYLK 247
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BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: A0A8C4T9F1_ERPCA (Cytoplasmic tRNA 2-thiolation protein 1 n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4T9F1_ERPCA)

HSP 1 Score: 336 bits (861), Expect = 2.150e-112
Identity = 168/267 (62.92%), Postives = 202/267 (75.66%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP LCS C  +KA L+RPK G +LCKECF+++FEEEVHH I + +LF RGE V IGASGGKDSTVLAHVM++LN R+ YGL L LLS+DEGI GYRDDSL TV RN+ QY LPL++VSY++LYGW+MD IV  +G K+NCT CGVFRRQALDRGA+ +  DK+ TGHNADD AET L+N L GD+ RL+R T++ TG             EGA       +PR KPL  +YEKEIVLYAY KKLDYF+TECIYSP A+RG AR+ +K
Sbjct:    1 MPVLCSRCEIKKAHLKRPKTGHSLCKECFFWVFEEEVHHSIVSAKLFNRGETVGIGASGGKDSTVLAHVMKVLNERYDYGLNLILLSVDEGITGYRDDSLETVKRNQEQYELPLKIVSYEELYGWTMDTIVKQVGLKNNCTFCGVFRRQALDRGAMMLEVDKICTGHNADDVAETVLMNFLRGDIARLRRCTAISTG------------SEGA-------IPRCKPLKYAYEKEIVLYAYFKKLDYFSTECIYSPNAYRGHARSFLK 248
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BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: A0A3P9JVT4_ORYLA (Cytoplasmic tRNA 2-thiolation protein 1 n=2 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9JVT4_ORYLA)

HSP 1 Score: 336 bits (861), Expect = 3.770e-112
Identity = 169/267 (63.30%), Postives = 203/267 (76.03%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP  CS CG ++A+L+RPK G +LCKECF+ +FEEEVH  I    LF+ GE VAI ASGGKDSTVLAHVM++LN R++YGL L L+S+DEGI GYRDDSL TV RN+ QY LPL++VSY++LYGW+MD IV  +GRK+NCT CGVFRRQALDRGAL +  DK+ TGHNADD AET L+N+L GD+ RL+R T++ T              EG    EGV VPR KPL  +YEKEIVLYAY KKLDYF+TECIYSP A+RG ART +K
Sbjct:   16 MPVSCSSCGEKRAMLKRPKTGHSLCKECFFMVFEEEVHQTIVNASLFKSGETVAIAASGGKDSTVLAHVMKVLNERYNYGLELMLISVDEGITGYRDDSLETVKRNQQQYELPLKIVSYEELYGWTMDAIVKQVGRKNNCTFCGVFRRQALDRGALMLKVDKICTGHNADDVAETVLMNVLRGDIARLRRCTTISTA------------SEG----EGV-VPRCKPLKYAYEKEIVLYAYFKKLDYFSTECIYSPNAYRGHARTFLK 265
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BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: L7LXI3_RHIPC (Cytoplasmic tRNA 2-thiolation protein 1 n=9 Tax=Ixodidae TaxID=6939 RepID=L7LXI3_RHIPC)

HSP 1 Score: 335 bits (860), Expect = 4.110e-112
Identity = 170/264 (64.39%), Postives = 200/264 (75.76%), Query Frame = 1 
Query:   10 LCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            LCS C S +AVL+RPK G ALCKECFY  FE EVH  I    LF+ G++VAI ASGGKDSTVLA+VM+LLN RH YGLRL LLSIDEGI GYRDDSL TV  NR +Y +PLEV+SYKDLYGWSMDEIVA IGR++NCT CGVFRRQALDRGA  +G +K+VTGHNADD AET L+N+L GD+ RL+R T++ TG             EGA       +PR+KP   +YEKEIV+YA+ KKL+YF+TECIYSP A+RG AR  +K
Sbjct:    3 LCSKCDSSRAVLKRPKTGDALCKECFYVAFETEVHETIVRAHLFQPGDYVAIAASGGKDSTVLAYVMKLLNERHKYGLRLVLLSIDEGITGYRDDSLKTVESNREEYGIPLEVLSYKDLYGWSMDEIVAQIGRRNNCTFCGVFRRQALDRGAAKLGVNKMVTGHNADDIAETVLMNVLRGDIARLQRCTAITTG------------SEGA-------IPRSKPFKYTYEKEIVMYAHFKKLNYFSTECIYSPNAYRGHARAYLK 247
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BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: UPI00106DCCC8 (cytoplasmic tRNA 2-thiolation protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106DCCC8)

HSP 1 Score: 335 bits (860), Expect = 4.390e-112
Identity = 168/267 (62.92%), Postives = 203/267 (76.03%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP++C  CG R  +L+RPK G A CKECF+ +FE E+H  IT  +LF+RGE VAIGASGGKDSTVLA+V++ LN R+ YGL L LLS+DEGI GYRDDSL TV RN+ QY LPL+VVSYK+LYGW+MDEIV  IG K+NCT CGVFRRQALDRGA+ +  DK+VTGHNADD AET ++NIL GD+ RL+R T++ TG             EGA       +PR KPL  +YEKEIV+YAY KKLDYF+TECIYSP A+RG+ART +K
Sbjct:    1 MPAVCKKCGER-GILKRPKTGEAFCKECFFAVFESEIHETITKSKLFKRGELVAIGASGGKDSTVLAYVLKTLNARYDYGLELILLSVDEGITGYRDDSLETVKRNKEQYQLPLKVVSYKELYGWTMDEIVKQIGLKNNCTFCGVFRRQALDRGAMLLKVDKIVTGHNADDIAETVIMNILRGDIARLQRCTAITTG------------TEGA-------IPRCKPLKYAYEKEIVMYAYFKKLDYFSTECIYSPNAYRGYARTYLK 247
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BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: A0A087Y425_POEFO (Cytoplasmic tRNA 2-thiolation protein 1 n=10 Tax=Percomorphaceae TaxID=1489872 RepID=A0A087Y425_POEFO)

HSP 1 Score: 335 bits (859), Expect = 4.620e-112
Identity = 169/267 (63.30%), Postives = 201/267 (75.28%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP LCS C  ++AVL+RPK G +LCK CF++ FEEEVH  I   +LFR GE V I ASGGKDSTVLAHVM+LLN RH YGL L L+S+DEGI GYRDDSL TV RN+ QY LPL++VSY++LYGW+MD IV  +G K+NCT CGVFRRQALDRGA+ +  DK+ TGHNADD AET L+NIL GD+ RL+R T++ T              EG    +GV VPR KPL  +YEKEIVLYAY KKLDYF+TECIYSP A+RG+ART +K
Sbjct:    1 MPVLCSSCSEKRAVLKRPKTGHSLCKACFFWAFEEEVHQTIVAAKLFRPGETVGIAASGGKDSTVLAHVMKLLNERHGYGLELMLISVDEGITGYRDDSLETVKRNQQQYELPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAIMLKVDKICTGHNADDVAETVLMNILRGDIARLRRCTAISTA------------SEG----DGV-VPRCKPLKYAYEKEIVLYAYFKKLDYFSTECIYSPNAYRGYARTFLK 250
[Close]
BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: UPI00112B3417 (cytoplasmic tRNA 2-thiolation protein 1-like isoform X4 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112B3417)

HSP 1 Score: 335 bits (860), Expect = 1.030e-111
Identity = 167/267 (62.55%), Postives = 199/267 (74.53%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP  CS C    AVLRRPK G +LCKECF+  FEEEVH  I + +LF+ GE V IGASGGKDSTVLAHV+++LN RH YGL L LLS+DEGI GYRDDSL TV RN+ QY LPL++VSY++LYGW+MD+IV  +G K+NCT CGVFRRQALDRGAL +G DK+ TGHNADD AET L+N+L GD+ RL+R T++ TG             EGA       +PR KPL  +YEKEIVLYAY KKLDYF+TEC+YSP A+RG AR  +K
Sbjct:   38 MPVCCSSCKEHNAVLRRPKTGHSLCKECFFLAFEEEVHQTIVSAQLFQHGETVGIGASGGKDSTVLAHVLKVLNERHGYGLTLFLLSVDEGITGYRDDSLETVRRNQQQYELPLKIVSYEELYGWTMDDIVRQVGLKNNCTFCGVFRRQALDRGALMLGVDKICTGHNADDIAETVLMNVLRGDIARLRRCTAVATG------------SEGA-------IPRCKPLKYAYEKEIVLYAYFKKLDYFSTECVYSPNAYRGHARAFLK 285
[Close]
BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: CTU1_DANRE (Cytoplasmic tRNA 2-thiolation protein 1 n=32 Tax=Otophysi TaxID=186626 RepID=CTU1_DANRE)

HSP 1 Score: 334 bits (856), Expect = 1.320e-111
Identity = 167/267 (62.55%), Postives = 203/267 (76.03%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP  CS C  ++AVL+RPK G +LCK+CF++ FEEE+H  IT+  LF RGE VAIGASGGKDSTVLAHVM+LLN R+ YGL+L LLS+DEGI GYRDDSL TV RN+ QY LPL++VSY++LYGW+MD IV  +G K+NCT CGVFRRQALDRGA+ +  DK+ TGHNADD AET L+N+L GD+ RL+R T++ T              EG    +G A+PR KPL  +YEKEIVLYAY KKLDYF+TECIYSP A+RG AR  +K
Sbjct:    1 MPVQCSNCEQKRAVLKRPKTGHSLCKDCFFWAFEEEIHQTITSAGLFNRGETVAIGASGGKDSTVLAHVMKLLNERYDYGLKLLLLSVDEGITGYRDDSLETVKRNQQQYELPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAMMLNVDKICTGHNADDVAETVLMNVLRGDIARLRRCTAISTS------------SEG----DG-AIPRCKPLKYAYEKEIVLYAYFKKLDYFSTECIYSPNAYRGHARAFLK 250
[Close]
BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Match: A0A1A7YH49_9TELE (Cytosolic thiouridylase subunit 1 homolog (Fragment) n=4 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YH49_9TELE)

HSP 1 Score: 335 bits (858), Expect = 1.350e-111
Identity = 165/267 (61.80%), Postives = 203/267 (76.03%), Query Frame = 1 
Query:    1 MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRGEHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSLATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQALDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGXXXXXXXXXXXEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATECIYSPQAFRGFARTAIK 801
            MP+LCS C  ++A+L+RPK G +LCKECF+F FEEE H  I    LF+ GE V I ASGGKDSTVLAH+M+LLN R++YGL+L L+S+DEGI GYRDDSL TV RN+ QY LPL++VSY++LYGW+MD IV  +G K+NCT CGVFRRQALDRGA+ +  DK+ TGHNADD AET L+N+L GD+ RL+R T++ T              EG    +GV VPR KPL  +YEKEIVLYAY KKLDYF+TECIYSP A+RG+ART +K
Sbjct:   23 MPALCSSCSEKRAMLKRPKTGHSLCKECFFFAFEEEAHQTIVAANLFKPGETVGIAASGGKDSTVLAHIMKLLNERYNYGLKLMLISVDEGITGYRDDSLETVKRNQQQYELPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAIMLNVDKICTGHNADDVAETVLMNVLRGDIARLRRCTAISTA------------SEG----DGV-VPRCKPLKYAYEKEIVLYAYFKKLDYFSTECIYSPNAYRGYARTYLK 272
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66136.16057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000359CBB28.760e-11462.92cytoplasmic tRNA 2-thiolation protein 1 n=1 Tax=Ap... [more]
A0A224YIE6_9ACAR1.610e-11264.39Cytoplasmic tRNA 2-thiolation protein 1 n=6 Tax=Ix... [more]
A0A8C4T9F1_ERPCA2.150e-11262.92Cytoplasmic tRNA 2-thiolation protein 1 n=2 Tax=Po... [more]
A0A3P9JVT4_ORYLA3.770e-11263.30Cytoplasmic tRNA 2-thiolation protein 1 n=2 Tax=Or... [more]
L7LXI3_RHIPC4.110e-11264.39Cytoplasmic tRNA 2-thiolation protein 1 n=9 Tax=Ix... [more]
UPI00106DCCC84.390e-11262.92cytoplasmic tRNA 2-thiolation protein 1-like n=1 T... [more]
A0A087Y425_POEFO4.620e-11263.30Cytoplasmic tRNA 2-thiolation protein 1 n=10 Tax=P... [more]
UPI00112B34171.030e-11162.55cytoplasmic tRNA 2-thiolation protein 1-like isofo... [more]
CTU1_DANRE1.320e-11162.55Cytoplasmic tRNA 2-thiolation protein 1 n=32 Tax=O... [more]
A0A1A7YH49_9TELE1.350e-11161.80Cytosolic thiouridylase subunit 1 homolog (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66136contigM-pyrifera_M_contig66136:2..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score342.0
Seed ortholog evalue2.4e-91
Seed eggNOG ortholog6500.XP_005097680.1
Preferred nameCTU1
KEGG koko:K14168
KEGG Pathwayko04122,map04122
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated urm1 onto the uridine of tRNAs at wobble position
EggNOG OGs38DIE@33154,3BD43@33208,3D1EB@33213,COG0037@1,KOG2840@2759
COG Functional cat.J
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons1
Model size801
Cds size801
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.904934-CDS-M-pyrifera_M_contig66136:1..8021622816550.904934-CDS-M-pyrifera_M_contig66136:1..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66136 2..802 -
1692278041.635153-CDS-M-pyrifera_M_contig66136:1..8021692278041.635153-CDS-M-pyrifera_M_contig66136:1..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66136 2..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66136.16057.1prot_M-pyrifera_M_contig66136.16057.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66136 2..802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66136.16057.1

>prot_M-pyrifera_M_contig66136.16057.1 ID=prot_M-pyrifera_M_contig66136.16057.1|Name=mRNA_M-pyrifera_M_contig66136.16057.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=267bp
MPSLCSGCGSRKAVLRRPKDGSALCKECFYFLFEEEVHHCITTHRLFRRG
EHVAIGASGGKDSTVLAHVMRLLNTRHSYGLRLTLLSIDEGIRGYRDDSL
ATVLRNRSQYALPLEVVSYKDLYGWSMDEIVAAIGRKHNCTVCGVFRRQA
LDRGALAIGADKLVTGHNADDAAETALLNILGGDLRRLKRGTSLMTGGEE
GGGGGGGGGEEGALVKEGVAVPRAKPLFTSYEKEIVLYAYHKKLDYFATE
CIYSPQAFRGFARTAIK
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mRNA from alignment at M-pyrifera_M_contig66136:2..802-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66136.16057.1 ID=mRNA_M-pyrifera_M_contig66136.16057.1|Name=mRNA_M-pyrifera_M_contig66136.16057.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=801bp|location=Sequence derived from alignment at M-pyrifera_M_contig66136:2..802- (Macrocystis pyrifera P11B4 male)
ATGCCTTCGTTGTGCAGTGGTTGCGGCAGCCGGAAGGCTGTGTTGCGTCG
TCCGAAGGACGGTTCCGCGTTGTGCAAGGAGTGTTTCTACTTCCTGTTCG
AGGAGGAGGTGCACCACTGCATCACGACGCACCGTCTCTTTCGCCGCGGG
GAGCATGTAGCGATCGGGGCTTCTGGGGGCAAGGACTCGACGGTGCTAGC
GCACGTGATGCGGCTGTTGAACACGCGGCATTCGTATGGCCTGCGTTTGA
CGCTGCTTTCGATCGACGAGGGCATTCGGGGCTACCGCGACGATTCTCTG
GCAACGGTGCTTCGCAATCGGTCCCAATACGCGCTCCCTCTGGAAGTGGT
GTCGTACAAAGACCTCTACGGGTGGAGCATGGACGAAATCGTTGCAGCCA
TTGGTCGAAAACACAATTGCACCGTGTGTGGGGTCTTTCGAAGGCAAGCA
CTGGACAGAGGGGCACTCGCCATCGGTGCCGATAAACTTGTAACCGGTCA
CAATGCCGATGACGCCGCGGAAACGGCTCTATTGAACATCTTGGGGGGCG
ATCTGCGGAGGCTGAAGCGAGGCACGTCGCTTATGACGGGGGGAGAAGAA
GGAGGTGGAGGTGGAGGTGGTGGTGGAGAAGAGGGTGCTTTGGTGAAGGA
GGGTGTCGCTGTTCCTAGGGCCAAACCTCTCTTTACTTCGTATGAGAAGG
AAATCGTGCTGTATGCCTACCACAAGAAACTCGATTATTTCGCCACGGAA
TGCATCTATTCCCCACAAGCCTTTCGAGGTTTCGCAAGGACAGCCATCAA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66136:2..802-

>mRNA_M-pyrifera_M_contig66136.16057.1 ID=mRNA_M-pyrifera_M_contig66136.16057.1|Name=mRNA_M-pyrifera_M_contig66136.16057.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1602bp|location=Sequence derived from alignment at M-pyrifera_M_contig66136:2..802- (Macrocystis pyrifera P11B4 male)
ATGCCTTCGTTGTGCAGTGGTTGCGGCAGCCGGAAGGCTGTGTTGCGTCG
TCCGAAGGACGGTTCCGCGTTGTGCAAGGAGTGTTTCTACTTCCTGTTCG
AGGAGGAGGTGCACCACTGCATCACGACGCACCGTCTCTTTCGCCGCGGG
GAGCATGTAGCGATCGGGGCTTCTGGGGGCAAGGACTCGACGGTGCTAGC
GCACGTGATGCGGCTGTTGAACACGCGGCATTCGTATGGCCTGCGTTTGA
CGCTGCTTTCGATCGACGAGGGCATTCGGGGCTACCGCGACGATTCTCTG
GCAACGGTGCTTCGCAATCGGTCCCAATACGCGCTCCCTCTGGAAGTGGT
GTCGTACAAAGACCTCTACGGGTGGAGCATGGACGAAATCGTTGCAGCCA
TTGGTCGAAAACACAATTGCACCGTGTGTGGGGTCTTTCGAAGGCAAGCA
CTGGACAGAGGGGCACTCGCCATCGGTGCCGATAAACTTGTAACCGGTCA
CAATGCCGATGACGCCGCGGAAACGGCTCTATTGAACATCTTGGGGGGCG
ATCTGCGGAGGCTGAAGCGAGGCACGTCGCTTATGACGGGGGGAGAAGAA
GGAGGTGGAGGTGGAGGTGGTGGTGGAGAAGAGGGTGCTTTGGTGAAGGA
GGGTGTCGCTGTTCCTAGGGCCAAACCTCTCTTTACTTCGTATGAGAAGG
AAATCGTGCTGTATGCCTACCACAAGAAACTCGATTATTTCGCCACGGAA
TGCATCTATTCCCCACAAGCCTTTCGAGGTTTCGCAAGGACAGCCATCAA
AATGCCTTCGTTGTGCAGTGGTTGCGGCAGCCGGAAGGCTGTGTTGCGTC
GTCCGAAGGACGGTTCCGCGTTGTGCAAGGAGTGTTTCTACTTCCTGTTC
GAGGAGGAGGTGCACCACTGCATCACGACGCACCGTCTCTTTCGCCGCGG
GGAGCATGTAGCGATCGGGGCTTCTGGGGGCAAGGACTCGACGGTGCTAG
CGCACGTGATGCGGCTGTTGAACACGCGGCATTCGTATGGCCTGCGTTTG
ACGCTGCTTTCGATCGACGAGGGCATTCGGGGCTACCGCGACGATTCTCT
GGCAACGGTGCTTCGCAATCGGTCCCAATACGCGCTCCCTCTGGAAGTGG
TGTCGTACAAAGACCTCTACGGGTGGAGCATGGACGAAATCGTTGCAGCC
ATTGGTCGAAAACACAATTGCACCGTGTGTGGGGTCTTTCGAAGGCAAGC
ACTGGACAGAGGGGCACTCGCCATCGGTGCCGATAAACTTGTAACCGGTC
ACAATGCCGATGACGCCGCGGAAACGGCTCTATTGAACATCTTGGGGGGC
GATCTGCGGAGGCTGAAGCGAGGCACGTCGCTTATGACGGGGGGAGAAGA
AGGAGGTGGAGGTGGAGGTGGTGGTGGAGAAGAGGGTGCTTTGGTGAAGG
AGGGTGTCGCTGTTCCTAGGGCCAAACCTCTCTTTACTTCGTATGAGAAG
GAAATCGTGCTGTATGCCTACCACAAGAAACTCGATTATTTCGCCACGGA
ATGCATCTATTCCCCACAAGCCTTTCGAGGTTTCGCAAGGACAGCCATCA
AA
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