mRNA_M-pyrifera_M_contig66129.16053.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66129.16053.1
Unique NamemRNA_M-pyrifera_M_contig66129.16053.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66129.16053.1 vs. uniprot
Match: A0M238_GRAFK (Protein containing PKD domains n=1 Tax=Gramella forsetii (strain KT0803) TaxID=411154 RepID=A0M238_GRAFK)

HSP 1 Score: 60.8 bits (146), Expect = 8.000e-7
Identity = 55/173 (31.79%), Postives = 87/173 (50.29%), Query Frame = 1 
Query:  367 ASATQVVAGNTLQFTAITVKGKPNFWELQVSPNS-------GKQATFRTFGTFEYTFYDPGQYSV---AVRTCDADNNCVRPVISVTVVDNPDLIPLEASFTGPADA-EVSSDVTFQSTSQGDPASYRWTFPGGSPDFSVSPNGTTSWSEPGTKTVTLEITRGS--ETDTITR 846
            A  T  + G+T+QFT +T K + + +EL+   +S       G  AT  T      T+ +PG Y+V   A R     ++       +T++     IP+E  F+      E    +TF  +S GD  S++WTFPGG+P+ S   N T  ++E G   VTLE+ R    E+++IT+
Sbjct:  138 ADKTSALFGSTVQFTNLT-KNRRSEFELEREEDSYLWEFEGGTPAT-STAENPVVTYPEPGVYNVKLTAHRAAPEHDDIEVKTDYITILA---AIPIEPKFSANITTIEAGEAITFTDSSSGDGDSWKWTFPGGTPETSTEQNPTVVYNEAGVYDVTLEVNRSQDGESESITK 305
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BLAST of mRNA_M-pyrifera_M_contig66129.16053.1 vs. uniprot
Match: A0A4Q3EPM8_9SPHI (Uncharacterized protein (Fragment) n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3EPM8_9SPHI)

HSP 1 Score: 57.0 bits (136), Expect = 2.030e-5
Identity = 49/171 (28.65%), Postives = 81/171 (47.37%), Query Frame = 1 
Query:  397 TLQFTAITVKGKPNFWELQVSPNSGKQATFRTFG------------TFEYTFYDPGQYSVAVRTCDADNNCVRPVISVTVVDNPDLIPLEASFTGPA----DAEVSSDVTFQSTSQGDPASYRWTFPGGSPDFSVSP-NGTTSWSEPGTKTVTLEITRGSETDTITRDITI 858
            T+  T+ T   K N ++  VS N+    T  T G            T E++F +PG Y++A+ T +++  C     + TV+        + S T P     +  V+   T  +      A+Y W+FPGG+P  S  P  G  +++  G+  +TLE+T    T TIT++IT+
Sbjct:  489 TITNTSNTPLCKTNTYQWAVSYNNTSGCTPNTAGFTYINGTSATSETPEFSFTNPGVYTIALVTKNSNGLCASTAFTQTVIVK---TKPQGSVTAPTAVCQNGSVNPSATIANCYATTAATYSWSFPGGTPSASTLPIPGAITYTTSGSYVITLEVTNECGTTTITKNITV 656
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BLAST of mRNA_M-pyrifera_M_contig66129.16053.1 vs. uniprot
Match: A0A359CS72_9BACT (Uncharacterized protein (Fragment) n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A359CS72_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.790e-5
Identity = 48/156 (30.77%), Postives = 78/156 (50.00%), Query Frame = 1 
Query:  382 VVAGNTLQFTAITVKGKPNFWELQVSPNSGKQATFRTFGTFEYTFYDPGQYSVAVRTCDAD-NNCVRPVISVTVVDNPDLIPLEASFTGPAD-AEVSSDVTFQSTSQGDPASYRWTFPGGSPDFSVSPNGTTSWSEPGTKTVTLEITRGSETDTIT 843
            V  G+T+QFT ++  G P+ W       +   ++ +  G     + D G +SV++   +AD ++ V  +  +TV  +     L A F+      E    V F   S G+P ++ W F GG+P  S + N    +S  GT +VTL +T G++TDTIT
Sbjct: 1772 VSEGSTVQFTDLS-SGSPDTWVWTFEGGTPSTSSDQNPGV---VYSDAGTFSVSLTVSNADGSDSVSYMDYITVYSSGGT--LFADFSADQTFIEEGQTVQFSDLSSGNPTAWSWIFDGGTPSSSTAQNPAVVYSTSGTYSVTLIVTDGTDTDTIT 1921
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BLAST of mRNA_M-pyrifera_M_contig66129.16053.1 vs. uniprot
Match: A0A7C4JT48_9BACT (PKD domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C4JT48_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.850e-5
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:  508 YTFYDPGQYSVAVRTCDADNNCVRPVIS--VTVVDNPDLIPLEASFTG-PADAEVSSDVTFQSTSQGDPASYRWTFPGGSPDFSVSPNGTTSWSEPGTKTVTLEITRGSETDTITR 846
            + +   G Y+V   T  A N C     +  VTVV  P      A+FT  P       +V F STSQG+P S++W FPGGSP  S + N T ++   G  +VTL +T    +DT+TR
Sbjct:  689 HIYAQSGTYTV---TLTATNACGSNTSTKTVTVVGAP-----VANFTASPTSGCAPLNVQFTSTSQGNPTSFQWHFPGGSPSSSTAQNPTVTYDSSGAYSVTLIVTNNLGSDTLTR 796
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BLAST of mRNA_M-pyrifera_M_contig66129.16053.1 vs. uniprot
Match: A0A239LPE6_9BACT (PKD domain-containing protein n=1 Tax=Ekhidna lutea TaxID=447679 RepID=A0A239LPE6_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.110e-5
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:  625 LEASFTGPADAEVSSD--VTFQSTSQGDPASYRWTFPGGSPDFSVSPNGTTSWSEPGTKTVTLEITRGSETDTI 840
            LEA+F+   +  V +D  V FQ  S G+P+++ W FPGGSP+ S   N T +++E G K+VTL ++ GSETD +
Sbjct:   30 LEANFSV-VERNVGTDEQVLFQDESTGNPSTWLWEFPGGSPETSTEQNPTVTYAEEGFKSVTLTVSNGSETDMV 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66129.16053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0M238_GRAFK8.000e-731.79Protein containing PKD domains n=1 Tax=Gramella fo... [more]
A0A4Q3EPM8_9SPHI2.030e-528.65Uncharacterized protein (Fragment) n=1 Tax=Sphingo... [more]
A0A359CS72_9BACT2.790e-530.77Uncharacterized protein (Fragment) n=2 Tax=Bactero... [more]
A0A7C4JT48_9BACT4.850e-537.93PKD domain-containing protein n=1 Tax=Bacteroidete... [more]
A0A239LPE6_9BACT5.110e-544.59PKD domain-containing protein n=1 Tax=Ekhidna lute... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66129contigM-pyrifera_M_contig66129:4..952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.5
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog411154.GFO_1713
KEGG koko:K01729
KEGG ReactionR03706
KEGG Pathwayko00051,map00051
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.PKD domain
EggNOG OGs1HZZR@117743,4NI4E@976,COG3291@1,COG3291@2
EC4.2.2.3
COG Functional cat.S
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size863
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.7523465-CDS-M-pyrifera_M_contig66129:3..1171622816550.7523465-CDS-M-pyrifera_M_contig66129:3..117Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66129 4..117 +
1692278041.578656-CDS-M-pyrifera_M_contig66129:3..1171692278041.578656-CDS-M-pyrifera_M_contig66129:3..117Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66129 4..117 +
1622816550.7629318-CDS-M-pyrifera_M_contig66129:205..9521622816550.7629318-CDS-M-pyrifera_M_contig66129:205..952Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66129 206..952 +
1692278041.5929797-CDS-M-pyrifera_M_contig66129:205..9521692278041.5929797-CDS-M-pyrifera_M_contig66129:205..952Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66129 206..952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66129.16053.1prot_M-pyrifera_M_contig66129.16053.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66129 4..952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66129.16053.1

>prot_M-pyrifera_M_contig66129.16053.1 ID=prot_M-pyrifera_M_contig66129.16053.1|Name=mRNA_M-pyrifera_M_contig66129.16053.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=287bp
RRERRRLVQRPAILTRRSHPPRWNHRTDLQVRREQRRRAATEQAAAEGSP
TTTTPAGDDRNTPATQPDPDDTTPAVTTPGTPSTEPGGEPQGETGETTST
TDPDGSTTSTTENTAPLVIQIGASATQVVAGNTLQFTAITVKGKPNFWEL
QVSPNSGKQATFRTFGTFEYTFYDPGQYSVAVRTCDADNNCVRPVISVTV
VDNPDLIPLEASFTGPADAEVSSDVTFQSTSQGDPASYRWTFPGGSPDFS
VSPNGTTSWSEPGTKTVTLEITRGSETDTITRDITIL
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mRNA from alignment at M-pyrifera_M_contig66129:4..952+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66129.16053.1 ID=mRNA_M-pyrifera_M_contig66129.16053.1|Name=mRNA_M-pyrifera_M_contig66129.16053.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=949bp|location=Sequence derived from alignment at M-pyrifera_M_contig66129:4..952+ (Macrocystis pyrifera P11B4 male)
CGCCGAGAACGGCGCCGTCTGGTACAACGACCCGCAATCCTCACGCGCCG
GTCTCATCCACCGAGATGGAACCATCGAACCGATCTCCAAGTACGACGAG
AACAGCGGCGGCGGGTTCGTCGCCGCCCCGTTGAGCGACACCCAGGCCGA
CGACGTCGCCGTCTCCGGGGCACAGGTCACGCCCGACAGCGAACTCTCCG
AGGCCGCCACCGAGCAGGCTGCGGCCGAAGGCTCGCCGACCACCACCACC
CCGGCCGGCGACGATCGCAACACGCCTGCCACCCAGCCCGACCCCGACGA
CACCACGCCTGCGGTCACCACGCCGGGAACCCCGAGCACCGAACCCGGCG
GCGAGCCCCAGGGCGAAACCGGCGAGACCACCAGCACCACCGATCCCGAC
GGCTCCACCACCTCGACCACCGAGAACACCGCCCCGCTGGTGATCCAGAT
CGGTGCAAGCGCAACGCAGGTCGTCGCCGGCAACACCCTGCAGTTCACGG
CGATCACCGTGAAGGGCAAGCCCAACTTCTGGGAACTCCAGGTCTCGCCG
AACTCCGGCAAGCAGGCCACGTTCCGCACGTTCGGCACCTTCGAATACAC
CTTCTACGACCCGGGCCAGTACTCGGTCGCCGTTCGCACCTGCGATGCCG
ACAACAACTGTGTGCGTCCGGTCATCAGCGTGACCGTGGTCGACAACCCC
GACCTCATCCCCCTCGAGGCCTCGTTCACCGGGCCTGCCGATGCCGAGGT
GTCGTCCGATGTCACGTTCCAGAGCACCTCGCAAGGCGATCCCGCCAGCT
ACCGCTGGACCTTCCCCGGCGGCAGCCCCGACTTCTCGGTGTCGCCGAAC
GGCACCACCAGCTGGAGTGAGCCCGGCACCAAGACGGTCACACTCGAGAT
CACCCGAGGCAGCGAGACCGACACCATCACCAGAGACATCACCATCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66129:4..952+

>mRNA_M-pyrifera_M_contig66129.16053.1 ID=mRNA_M-pyrifera_M_contig66129.16053.1|Name=mRNA_M-pyrifera_M_contig66129.16053.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1722bp|location=Sequence derived from alignment at M-pyrifera_M_contig66129:4..952+ (Macrocystis pyrifera P11B4 male)
CGCCGAGAACGGCGCCGTCTGGTACAACGACCCGCAATCCTCACGCGCCG
GTCTCATCCACCGAGATGGAACCATCGAACCGATCTCCAAGTACGACGAG
AACAGCGGCGGCGGCGCCGAGAACGGCGCCGTCTGGTACAACGACCCGCA
ATCCTCACGCGCCGGTCTCATCCACCGAGATGGAACCATCGAACCGATCT
CCAAGTACGACGAGAACAGCGGCGGCGGGCCGCCACCGAGCAGGCTGCGG
CCGAAGGCTCGCCGACCACCACCACCCCGGCCGGCGACGATCGCAACACG
CCTGCCACCCAGCCCGACCCCGACGACACCACGCCTGCGGTCACCACGCC
GGGAACCCCGAGCACCGAACCCGGCGGCGAGCCCCAGGGCGAAACCGGCG
AGACCACCAGCACCACCGATCCCGACGGCTCCACCACCTCGACCACCGAG
AACACCGCCCCGCTGGTGATCCAGATCGGTGCAAGCGCAACGCAGGTCGT
CGCCGGCAACACCCTGCAGTTCACGGCGATCACCGTGAAGGGCAAGCCCA
ACTTCTGGGAACTCCAGGTCTCGCCGAACTCCGGCAAGCAGGCCACGTTC
CGCACGTTCGGCACCTTCGAATACACCTTCTACGACCCGGGCCAGTACTC
GGTCGCCGTTCGCACCTGCGATGCCGACAACAACTGTGTGCGTCCGGTCA
TCAGCGTGACCGTGGTCGACAACCCCGACCTCATCCCCCTCGAGGCCTCG
TTCACCGGGCCTGCCGATGCCGAGGTGTCGTCCGATGTCACGTTCCAGAG
CACCTCGCAAGGCGATCCCGCCAGCTACCGCTGGACCTTCCCCGGCGGCA
GCCCCGACTTCTCGGTGTCGCCGAACGGCACCACCAGCTGGAGTGAGCCC
GGCACCAAGACGGTCACACTCGAGATCACCCGAGGCAGCGAGACCGACAC
CATCACCAGAGACATCACCATCCTGGCCGCCACCGAGCAGGCTGCGGCCG
AAGGCTCGCCGACCACCACCACCCCGGCCGGCGACGATCGCAACACGCCT
GCCACCCAGCCCGACCCCGACGACACCACGCCTGCGGTCACCACGCCGGG
AACCCCGAGCACCGAACCCGGCGGCGAGCCCCAGGGCGAAACCGGCGAGA
CCACCAGCACCACCGATCCCGACGGCTCCACCACCTCGACCACCGAGAAC
ACCGCCCCGCTGGTGATCCAGATCGGTGCAAGCGCAACGCAGGTCGTCGC
CGGCAACACCCTGCAGTTCACGGCGATCACCGTGAAGGGCAAGCCCAACT
TCTGGGAACTCCAGGTCTCGCCGAACTCCGGCAAGCAGGCCACGTTCCGC
ACGTTCGGCACCTTCGAATACACCTTCTACGACCCGGGCCAGTACTCGGT
CGCCGTTCGCACCTGCGATGCCGACAACAACTGTGTGCGTCCGGTCATCA
GCGTGACCGTGGTCGACAACCCCGACCTCATCCCCCTCGAGGCCTCGTTC
ACCGGGCCTGCCGATGCCGAGGTGTCGTCCGATGTCACGTTCCAGAGCAC
CTCGCAAGGCGATCCCGCCAGCTACCGCTGGACCTTCCCCGGCGGCAGCC
CCGACTTCTCGGTGTCGCCGAACGGCACCACCAGCTGGAGTGAGCCCGGC
ACCAAGACGGTCACACTCGAGATCACCCGAGGCAGCGAGACCGACACCAT
CACCAGAGACATCACCATCCTG
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