mRNA_M-pyrifera_M_contig6609.16044.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6609.16044.1
Unique NamemRNA_M-pyrifera_M_contig6609.16044.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6609.16044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6609contigM-pyrifera_M_contig6609:6273..7583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_006390.1
Exons2
Model size519
Cds size519
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.0528727-CDS-M-pyrifera_M_contig6609:6272..63951622816550.0528727-CDS-M-pyrifera_M_contig6609:6272..6395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6609 6273..6395 -
1692278041.155115-CDS-M-pyrifera_M_contig6609:6272..63951692278041.155115-CDS-M-pyrifera_M_contig6609:6272..6395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6609 6273..6395 -
1622816550.0646675-CDS-M-pyrifera_M_contig6609:7187..75831622816550.0646675-CDS-M-pyrifera_M_contig6609:7187..7583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6609 7188..7583 -
1692278041.1694162-CDS-M-pyrifera_M_contig6609:7187..75831692278041.1694162-CDS-M-pyrifera_M_contig6609:7187..7583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6609 7188..7583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6609.16044.1prot_M-pyrifera_M_contig6609.16044.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6609 6273..7583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6609.16044.1

>prot_M-pyrifera_M_contig6609.16044.1 ID=prot_M-pyrifera_M_contig6609.16044.1|Name=mRNA_M-pyrifera_M_contig6609.16044.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
MTPQVHPGLPINTPHGVGVVVCVRHDGMVVTQLASSGGGPGFTGYFHPSA
VDLLPFGYGGAGRGVQGSSAGFVQQQPPPSSASSVLSSVSAPSVGMFQPV
SPMDCGGFEVRCTIGRGVRRGVCVFSLSCMAVQVSEMAMQPALQQGFRAL
DRPKTPPPSKRRRSAGGFVFHQ*
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mRNA from alignment at M-pyrifera_M_contig6609:6273..7583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6609.16044.1 ID=mRNA_M-pyrifera_M_contig6609.16044.1|Name=mRNA_M-pyrifera_M_contig6609.16044.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at M-pyrifera_M_contig6609:6273..7583- (Macrocystis pyrifera P11B4 male)
ATGACCCCCCAGGTACACCCCGGGCTCCCGATCAACACGCCTCACGGTGT
TGGAGTGGTGGTGTGCGTCCGCCACGATGGAATGGTGGTGACCCAGCTTG
CCAGTAGCGGCGGAGGGCCTGGGTTTACCGGCTACTTTCACCCGTCGGCG
GTGGATCTTTTGCCGTTTGGATATGGTGGCGCTGGGCGGGGCGTGCAGGG
ATCTTCTGCAGGATTTGTGCAGCAGCAGCCGCCGCCTTCGTCAGCTTCGT
CTGTGTTGTCGTCGGTTTCGGCTCCGTCCGTGGGCATGTTTCAGCCCGTG
TCCCCCATGGACTGCGGCGGATTCGAGGTGCGTTGTACAATAGGAAGGGG
GGTAAGAAGGGGTGTGTGTGTGTTCTCATTGTCGTGCATGGCCGTAGTCA
TATGACCATAGACCCCCGCATCCCTACAATACCGGGACGGGGCACGTCGA
GTTTTCACCGACCAGGCAGACATTGCTTGCACCAAGCGCGAAGCGTCGTG
AGGTGTTGGACGAGTCGCAGGAAGGGTGAGCTGCATCCTACTAAGAACCG
CTGTTAAGGGCGTATTTTCTTGCATATGGATGGCAACGTTAAATGAATTG
ATTTAATGTCTGGTGTGGCCACTTCCAGATGCCTTACTATATACACACTA
CAGTACGGGATACGATCATCCCCCTTGTGCGGTCTATCTGCACCAAAAAT
GATCCAACCCGACTGCCAGCCGTGGTAACCGCCAAAAAAAAGAAGAGAAA
AAAAGGTACCCTGGCTGTCTGGCTCACGCAGTGAGAAGCGTGTTTTACAG
CGTCGTCGCCAACCGACGCCAACCCATCCTATATATATATATATCTGGTA
TATGATATGGGGGGGGGATAGGGGGGGGGAGTTTCGCGTTATGTCGTAGG
AAGGAGGGCAGAGAGGGAGGCGGGGGGGGAAGGAAGATAGAGGGGTTGGG
GGAGGGAGTAGGGGGGGGCGGGGGAGCAGGAGAGAGAGGAGAAAGGGGAA
GGGAGACGAAGGAAGAAGGTGGTAGGGAAGGGGCTTTAGTGACATTTAAT
ACCGTTCACAATTGTATTGGTCGTGTCCCCGCCCTGTCCACATGCTATTT
TGTGACGCACTGATTTGATTGGCTCACGCTTTTTTGTTTTTTTGTTTGTC
AGGCGCCCCACATGGGAATGGCCAACGGCGCAAACAAGCAGGTTTCGGAG
ATGGCGATGCAGCCGGCGCTGCAGCAGGGGTTCCGAGCGCTGGACCGCCC
TAAGACGCCGCCCCCGAGCAAGCGGAGGCGTTCTGCCGGCGGCTTTGTAT
TCCACCAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6609:6273..7583-

>mRNA_M-pyrifera_M_contig6609.16044.1 ID=mRNA_M-pyrifera_M_contig6609.16044.1|Name=mRNA_M-pyrifera_M_contig6609.16044.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig6609:6273..7583- (Macrocystis pyrifera P11B4 male)
ATGACCCCCCAGGTACACCCCGGGCTCCCGATCAACACGCCTCACGGTGT
TGGAGTGGTGGTGTGCGTCCGCCACGATGGAATGGTGGTGACCCAGCTTG
CCAGTAGCGGCGGAGGGCCTGGGTTTACCGGCTACTTTCACCCGTCGGCG
GTGGATCTTTTGCCGTTTGGATATGGTGGCGCTGGGCGGGGCGTGCAGGG
ATCTTCTGCAGGATTTGTGCAGCAGCAGCCGCCGCCTTCGTCAGCTTCGT
CTGTGTTGTCGTCGGTTTCGGCTCCGTCCGTGGGCATGTTTCAGCCCGTG
TCCCCCATGGACTGCGGCGGATTCGAGGTGCGTTGTACAATAGGAAGGGG
GGTAAGAAGGGGTGTGTGTGTGTTCTCATTGTCGTGCATGGCCGTAATGA
CCCCCCAGGTACACCCCGGGCTCCCGATCAACACGCCTCACGGTGTTGGA
GTGGTGGTGTGCGTCCGCCACGATGGAATGGTGGTGACCCAGCTTGCCAG
TAGCGGCGGAGGGCCTGGGTTTACCGGCTACTTTCACCCGTCGGCGGTGG
ATCTTTTGCCGTTTGGATATGGTGGCGCTGGGCGGGGCGTGCAGGGATCT
TCTGCAGGATTTGTGCAGCAGCAGCCGCCGCCTTCGTCAGCTTCGTCTGT
GTTGTCGTCGGTTTCGGCTCCGTCCGTGGGCATGTTTCAGCCCGTGTCCC
CCATGGACTGCGGCGGATTCGAGGTGCGTTGTACAATAGGAAGGGGGGTA
AGAAGGGGTGTGTGTGTGTTCTCATTGTCGTGCATGGCCGTACAGGTTTC
GGAGATGGCGATGCAGCCGGCGCTGCAGCAGGGGTTCCGAGCGCTGGACC
GCCCTAAGACGCCGCCCCCGAGCAAGCGGAGGCGTTCTGCCGGCGGCTTT
GTATTCCACCAATGACAGGTTTCGGAGATGGCGATGCAGCCGGCGCTGCA
GCAGGGGTTCCGAGCGCTGGACCGCCCTAAGACGCCGCCCCCGAGCAAGC
GGAGGCGTTCTGCCGGCGGCTTTGTATTCCACCAATGA
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