mRNA_M-pyrifera_M_contig66036.16035.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66036.16035.1
Unique NamemRNA_M-pyrifera_M_contig66036.16035.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A9UYV9_MONBE (Alpha-galactosidase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UYV9_MONBE)

HSP 1 Score: 181 bits (458), Expect = 5.860e-48
Identity = 103/284 (36.27%), Postives = 156/284 (54.93%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDD--MVRSVEYCHPGDECNQWIRDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQD------------PAVTPAFRVASNSSGVETWIKNLSTGD-FAVGLLNRGETA-GDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTAQAVAPH 804
            G YT+  + TCQ RPGS +HE+ D A +    + Y+KID C G +   +N SW +F   F       +  +V SVE C   + C  W+  +AN+WR S D++ATF SVL NA A        + GHYNDPDM E G PGL  DE     +LW ++SAP+LI  DL  A +  + I++ P ++AIDQD             A TPA       + V  W+K L++G  +A+ ++N GE+A  D+ + +++L + N+ ++ + D W+ K +G    +YT  ++  H
Sbjct:  686 GVYTARGTGTCQGRPGSLEHERIDAATFCDWDVDYVKIDVCEGAQ--DANASWTQFHTGFADCYAQKNHSIVMSVETCGDPNGCGTWVAGLANLWRTSPDLEATFASVLANAYANDAMAAVAKPGHYNDPDMLEVGNPGLDADEALSHFALWCVMSAPLLIGTDLIRASNNTLAILSAPELIAIDQDLGYNNEPQGRHVSAATPA------GTNVSCWLKRLASGSSYALIVVNEGESAVSDVKIEFASLGLPNSQSVTVRDMWARKDVGTFDDNYTVDSLPRH 961          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A7S1W298_ALECA (Alpha-galactosidase (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1W298_ALECA)

HSP 1 Score: 168 bits (425), Expect = 3.440e-46
Identity = 101/271 (37.27%), Postives = 135/271 (49.82%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVID--DMVRSVEYCHPGDE-CNQWIRDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQD--PAVTPAFRV------------ASNSSGVETWIKNLSTGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLG 762
            G YT+A S TCQ R G+Y HE  D   Y    + Y+KID CGG++W   NESW+RF++             V SVEYC  GD  C QWI  VAN WR + DIQAT+ SV++N  A          GH+NDPDM + G  GLT  EQ+    LW +  AP+LI  D+  A +  + ++ N   +A++QD  PA  P                A N++ V+ W K L++G  A  LLN         V +           E  D W+ +SLG
Sbjct:  102 GVYTAAGSRTCQGRSGAYAHEAADAQTYCGWGVDYLKIDSCGGSQWPQRNESWVRFQRALRACEAATGRQTVMSVEYC--GDAACGQWIGQVANTWRTTGDIQATWSSVMSNILANNAMARFASPGHFNDPDMLQVGNVGLTQTEQQSHFGLWCIAGAPLLIGTDVLRASNATLGLLRNREAIAVNQDLGPAGVPGAVQGTLLGSGAESDGAPNATAVQVWCKRLASGGRAYLLLNPASEPQPAAVSFPEG--------ETRDVWAQRSLG 362          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: UPI0019168FDD (carbohydrate-binding protein n=3 Tax=Ktedonobacter TaxID=363276 RepID=UPI0019168FDD)

HSP 1 Score: 155 bits (393), Expect = 1.080e-39
Identity = 93/264 (35.23%), Postives = 139/264 (52.65%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDDMVRSVEYCHPGDECN-QWIRDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNL-STGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTA 786
            G YT A + TCQ RPGSY HE++D   Y    I Y+K D C  T        +++ +      G    +V S+  C  G      W     N+WR + DI  ++ S+L+N D+      +   G +NDPDM E G  G+T  E     S+WA+ +AP++   DL++  +   +I+ N  V+A+DQDPA     +V+ N SG++ W K L + G  AV L NRG +A +ITV WS++ ++N +   + D WS    G  + SYTA
Sbjct:  122 GIYTDAGTATCQGRPGSYNHEQQDANTYASWGIDYVKEDWCN-TSGLDPQTQYVKMRDALANTGRA--IVFSI--CDWGTNSPWSWGPATGNLWRTTGDISDSWSSMLSNLDSSSQHASSASPGAWNDPDMLEVGNGGMTTTEDTSHFSMWAIQAAPLIAGNDLSSMSTSTKNILTNSEVVAVDQDPAGNQGTKVSDNGSGLQVWSKTLQANGARAVALFNRGGSATNITVNWSDIGLSNASAT-VRDLWSHTDKGSFSGSYTA 379          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A838ENQ6_9CHLR (Alpha-galactosidase n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838ENQ6_9CHLR)

HSP 1 Score: 152 bits (383), Expect = 8.960e-39
Identity = 95/277 (34.30%), Postives = 144/277 (51.99%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDDMVRSVEY--CHPGDECN-QWIRDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNLS-TGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTAQAVAPHSCTLI 819
            G YT A + TC   PG Y HE++D   +    I Y+K+D C  T   A  E + +      + G      RS+ Y  C  G      W   V N+WR + DI   + S+L+N D+      +   G +NDPDM E G  G++  E +   SLWA+ +AP+++  D+T   +    I+ N  V+A+DQDP      +V S+S+G++ W K L   G+ AV LLNR  +A +ITV WSN+ ++ + ++   D WS  ++G    SYTA  VA H   ++
Sbjct:  124 GLYTDAGTATCSGYPGMYGHEQQDANSFASWGIDYLKVDWCSSTGIDAQTE-YTKIGNALRSSG------RSITYSLCDWGQSSVWNWGPGVGNLWRTTGDISDNWTSMLSNFDSSAAHASSAAPGGWNDPDMLEVGNGGMSTTEDQTHFSLWAISAAPLILGNDMTNMSASAKSILMNADVIAVDQDPRGVQGTKV-SDSNGLQVWSKPLQGNGNVAVVLLNRNTSASNITVNWSNIGISGSASVR--DLWSHSNVGSFNGSYTAN-VAGHGVVML 389          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A8J3MRD2_9CHLR (Alpha-galactosidase n=1 Tax=Ktedonospora formicarum TaxID=2778364 RepID=A0A8J3MRD2_9CHLR)

HSP 1 Score: 151 bits (381), Expect = 5.070e-38
Identity = 92/264 (34.85%), Postives = 136/264 (51.52%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDDMVRSVEYCHPGDECN-QWIRDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNL-STGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTA 786
            G YT A + TCQ RPGSY HE++D   Y    I Y+K D C  T        +I+ +      G    +V S+  C+ G      W     N+WR + DI   + S+L+N D+          G +NDPDM E G  G+T  E     S+WA+++AP++   DL+A  S  + I+ N  V+A+DQD A     +V+ N +G++ W K L + G  AV L NR  +A +ITV W+ + ++N +   + D W+    G  T SYTA
Sbjct:  122 GIYTDAGTATCQGRPGSYNHEQQDANTYASWGIDYVKEDWCN-TSGLDPQTQYIKMRDALAQTGR--PIVFSI--CNWGVNSPWAWGPATGNLWRTTGDISNNWNSMLSNLDSSSQHASAAGPGAWNDPDMLEVGNGGMTQTEDTSHFSMWAIMAAPLIAGNDLSAMSSTTLSILTNSEVIAVDQDAAGKQGTKVSDNGAGLQVWSKTLQANGARAVALFNRSGSAANITVNWNTIGLSNASAT-VRDLWAHADKGSFTGSYTA 379          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A3G8V668_9MICO (Alpha-galactosidase n=4 Tax=Microbacterium TaxID=33882 RepID=A0A3G8V668_9MICO)

HSP 1 Score: 152 bits (383), Expect = 7.580e-38
Identity = 94/269 (34.94%), Postives = 139/269 (51.67%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDC---------------GGTRWKASNESWIRFKQEFETLGVIDDMVRSVEYCHPGDECNQWIRDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQP---GLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNLSTGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGK 753
            G Y S T  TCQ RPGSY HE +D   +    + Y+K D C               G T  + + + + R  +  E  G    +V S+  C    +  QW   V ++WR S DI  ++ SVL N    +G       GH+NDPDM E G     GL+ DE K  + LWAL++AP++   D+ +A +E+  ++ NPRVLAIDQDP  + A RV  +S+G++   + L  G  AVG+LN G     +TV  S     +  T+++T+ +SG+
Sbjct:  873 GVYESPTEGTCQKRPGSYGHEAQDAQTFASWGVDYLKYDWCQTSTTESPKMWAENPGLTEKQLAQKLFTRMSEALEATGR--PIVYSLSACCSALDFPQWAGSVGHLWRTSTDISNSWNSVLFNYGKTVGHAAAAGPGHWNDPDMLEVGNTSGTGLSPDETKAHLGLWALMAAPLVAGNDVRSASAEVTALLTNPRVLAIDQDPLGSAAVRVR-DSAGIQVLTRPLVDGSRAVGILNTGSAPASVTVPLSEAGF-DAGTVDLTEVFSGE 1137          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A318AUC9_9CAUL (Alpha-galactosidase n=2 Tax=Caulobacter TaxID=75 RepID=A0A318AUC9_9CAUL)

HSP 1 Score: 143 bits (361), Expect = 1.340e-36
Identity = 99/283 (34.98%), Postives = 136/283 (48.06%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDDMVRSVEYCH-PGDECNQWIRDVANMWRVSADIQATFGSV-------LNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNLSTGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTAQAVAPHSCTLITL 825
            G Y+ A   TC  RPGS  +E +D   Y    + Y+K D C      A +  +I      +  G   D+V S+  C   G +   W   V N+WR + DI   +  V       LN  D         R GH+NDPDM E G  G+T  E +   SLWA+L+AP++   D+    ++   I+ N  V+AIDQDP    A RV S    +E W + L  G  AV LLNRG    ++ V WS L+   T +  + D W+GK LG     Y AQ VAPH   ++T+
Sbjct:  119 GIYSDAGLKTCAGRPGSRGYEYQDARQYAAWGVDYLKYDWCMAGTQDAPSSYYI-MSAALQATGR--DIVFSI--CEWGGSKPWLWGAGVGNLWRTTGDIYDAWEGVKGYSLGMLNILDKQAELHPYARPGHWNDPDMLEVGNGGMTTQEYRAHFSLWAMLAAPLIAGNDIGHMDADTKAILTNKEVIAIDQDPLGVQARRV-SRQGDLEVWARPLKGGGRAVVLLNRGAAPAEVRVDWSMLDYPATLSGRVRDLWAGKDLGPRKGGYAAQ-VAPHGVVMVTV 394          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A838JFY4_9CHLR (Alpha-galactosidase n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838JFY4_9CHLR)

HSP 1 Score: 146 bits (368), Expect = 1.450e-36
Identity = 89/266 (33.46%), Postives = 140/266 (52.63%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDDMVRSVEY--CHPGDECNQWI--RDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNLSTGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTA 786
            G YT A + TC   PG Y HE++D   +    I Y+K+D C  T   A  E + +      + G      R++ +  C  G + N W     V NMWR + DI  T+ S+L+N D+      +   G +NDPDM E G  G++  + +   SLWA+ +AP++   DLT+  S    I+ N  V+A+DQD       +V S+S+G++ W K L  G  AV LLNR  ++ +ITV WS++ ++ + ++   + W+  ++G    SYTA
Sbjct:  126 GLYTDAGTATCAGYPGMYGHEQQDANTFASWGIDYLKVDWCSSTGEDAQTE-YTKIGNALRSSG------RAILFSLCDWG-QSNVWTWGPGVGNMWRTTGDITDTWSSMLSNFDSNASHASSAGPGGWNDPDMLEVGNGGMSTTQDQAHFSLWAISAAPLITGTDLTSMSSTTKSILTNTDVIAVDQDSLGVQGTKV-SDSNGLQVWSKRLQGGSVAVVLLNRNSSSSNITVNWSSIGISGSASVR--NLWTHSNVGSFNGSYTA 380          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A2V9PI84_9BACT (Alpha-galactosidase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9PI84_9BACT)

HSP 1 Score: 143 bits (361), Expect = 1.470e-36
Identity = 98/291 (33.68%), Postives = 143/291 (49.14%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDDMVRSVEYCHPGDECNQWI--RDVA-NMWRVSADIQATF--------GSVLNNA-----DAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNLSTGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTAQAVAPHSCTLITL 825
            G Y+ A ++TCQ RP    HE +D   Y    + Y+K D C     + +  S+   +Q  +  G    +V S+  C  G +   W+  ++V  N+WR + DIQ  +        G+  NN      DA          GH+NDPDM E G  G+T  E +   SLWAL++AP++   DL +   EI DI+ N  V+AIDQDP      RV  +   +E W K L  G  AV LLNRG ++ DIT+ W  +         + D W+ K+LG+    Y+A AV  H   ++T+
Sbjct:  116 GIYSDAGTMTCQKRPAGLGHEYQDARTYASWGVDYLKYDWCNTLPGQDARSSYANIRQALDASGR--PIVLSI--CEWG-KAQPWLWGKEVGGNLWRTTDDIQDRWAGKKEWSPGNCCNNGMLDIVDANAELYSHAGPGHWNDPDMLEVGNGGMTTTEYRSHFSLWALMAAPLIAGNDLRSMTPEIHDILTNKEVIAIDQDPLGRQGRRVWKDGD-LEIWSKQLQDGSRAVILLNRGASSHDITMTWEQIGYPAHLGATVRDLWAHKNLGKFAEKYSA-AVESHGLVMVTV 399          
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Match: A0A838EJZ4_9CHLR (Alpha-galactosidase n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838EJZ4_9CHLR)

HSP 1 Score: 145 bits (367), Expect = 1.850e-36
Identity = 94/278 (33.81%), Postives = 144/278 (51.80%), Query Frame = 1
Query:    1 GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASNESWIRFKQEFETLGVIDDMVRSVEY--CHPGDECNQWI--RDVANMWRVSADIQATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLWALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSGVETWIKNLS-TGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSGKSLGEHTTSYTAQAVAPHSCTLI 819
            G Y  A + TC   PG Y HE++D   Y    I YIK+D C  T   A  E + +     ++ G      R++ Y  C  G + N W     V N+WR + DI   + S+L+N D+      +   G +NDPDM E G  G++  E +   SLWA+ +AP+++  D++   S    IV N  V+A+DQD       +V S+S+G++ W K L   G+ AV LLNR  +  +ITV W+N+ ++ + ++   D WS  ++G    SYTA  VA H   ++
Sbjct:  123 GIYNDAGTKTCAGYPGMYGHEQQDANTYASWGIDYIKVDWCSSTGIDAQTE-YTKIGNALKSTG------RAITYSLCDWG-QSNVWTWGPGVGNLWRTTGDISDNWSSMLSNFDSSATHASSAGPGGWNDPDMLEVGNGGMSTTEYQTHFSLWAISAAPLILGTDISNMSSTTKSIVTNSDVIAVDQDSRGVQGTKV-SDSNGLQVWSKPLQGNGNVAVVLLNRNSSGSNITVNWNNIGISGSASVR--DLWSHTNVGSFNGSYTAN-VAGHGVVML 388          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66036.16035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9UYV9_MONBE5.860e-4836.27Alpha-galactosidase n=1 Tax=Monosiga brevicollis T... [more]
A0A7S1W298_ALECA3.440e-4637.27Alpha-galactosidase (Fragment) n=1 Tax=Alexandrium... [more]
UPI0019168FDD1.080e-3935.23carbohydrate-binding protein n=3 Tax=Ktedonobacter... [more]
A0A838ENQ6_9CHLR8.960e-3934.30Alpha-galactosidase n=1 Tax=Ktedonobacteraceae bac... [more]
A0A8J3MRD2_9CHLR5.070e-3834.85Alpha-galactosidase n=1 Tax=Ktedonospora formicaru... [more]
A0A3G8V668_9MICO7.580e-3834.94Alpha-galactosidase n=4 Tax=Microbacterium TaxID=3... [more]
A0A318AUC9_9CAUL1.340e-3634.98Alpha-galactosidase n=2 Tax=Caulobacter TaxID=75 R... [more]
A0A838JFY4_9CHLR1.450e-3633.46Alpha-galactosidase n=1 Tax=Ktedonobacteraceae bac... [more]
A0A2V9PI84_9BACT1.470e-3633.68Alpha-galactosidase n=2 Tax=Acidobacteria bacteriu... [more]
A0A838EJZ4_9CHLR1.850e-3633.81Alpha-galactosidase n=1 Tax=Ktedonobacteraceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66036contigM-pyrifera_M_contig66036:12..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue1.4e-44
Seed eggNOG ortholog44056.XP_009032357.1
KEGG rclassRC00049,RC00059,RC00451
KEGG koko:K07407
KEGG ReactionR01101,R01103,R01104,R01194,R01329,R02926,R03634,R04019,R04470,R05549,R05961,R06091
KEGG Pathwayko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alpha-galactosidase
EggNOG OGsKOG2366@1,KOG2366@2759
EC3.2.1.22
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size837
Cds size837
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816549.5083938-CDS-M-pyrifera_M_contig66036:11..1221622816549.5083938-CDS-M-pyrifera_M_contig66036:11..122Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66036 12..122 +
1692278040.8778207-CDS-M-pyrifera_M_contig66036:11..1221692278040.8778207-CDS-M-pyrifera_M_contig66036:11..122Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66036 12..122 +
1622816549.5224686-CDS-M-pyrifera_M_contig66036:229..9551622816549.5224686-CDS-M-pyrifera_M_contig66036:229..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66036 230..955 +
1692278040.894219-CDS-M-pyrifera_M_contig66036:229..9551692278040.894219-CDS-M-pyrifera_M_contig66036:229..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66036 230..955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66036.16035.1prot_M-pyrifera_M_contig66036.16035.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66036 12..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66036.16035.1

>prot_M-pyrifera_M_contig66036.16035.1 ID=prot_M-pyrifera_M_contig66036.16035.1|Name=mRNA_M-pyrifera_M_contig66036.16035.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
GTYTSATSLTCQDRPGSYQHEKEDGAYYVQNKITYIKIDDCGGTRWKASN
ESWIRFKQEFETLGVIDDMVRSVEYCHPGDECNQWIRDVANMWRVSADIQ
ATFGSVLNNADAGLGSRLTQRVGHYNDPDMAETGQPGLTIDEQKVQISLW
ALLSAPILISFDLTAAPSEIIDIVNNPRVLAIDQDPAVTPAFRVASNSSG
VETWIKNLSTGDFAVGLLNRGETAGDITVYWSNLNVTNTTTLEITDAWSG
KSLGEHTTSYTAQAVAPHSCTLITLDKK*
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mRNA from alignment at M-pyrifera_M_contig66036:12..955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66036.16035.1 ID=mRNA_M-pyrifera_M_contig66036.16035.1|Name=mRNA_M-pyrifera_M_contig66036.16035.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=944bp|location=Sequence derived from alignment at M-pyrifera_M_contig66036:12..955+ (Macrocystis pyrifera P11B4 male)
GGCACATACACATCTGCCACCTCCTTGACTTGCCAAGACCGTCCAGGATC TTACCAGCACGAAAAGGAAGATGGTGCCTACTATGTCCAAAACAAAATCA CCTACATCAAGGTATGAAGCAAAGGGGTAGGGAAAGAGAGGAAATGGGTT TTGGGGGGTTGTTGTTGTTGTGTGTGTGTGTGTATGTAAGTATGTTGTGA ATATTTTTGATGGTGCAGATTGATGATTGTGGTGGAACGAGATGGAAGGC GTCAAATGAGTCTTGGATCCGCTTCAAGCAAGAGTTTGAGACTCTTGGAG TGATTGATGACATGGTGCGATCTGTGGAGTATTGCCACCCTGGTGATGAA TGCAACCAGTGGATTCGGGATGTGGCGAATATGTGGCGAGTGAGTGCTGA TATTCAAGCAACATTTGGCTCTGTGTTGAACAATGCTGATGCTGGGTTGG GATCTCGCTTGACACAACGTGTTGGGCACTACAATGACCCCGACATGGCA GAGACTGGACAACCTGGTTTGACGATTGACGAACAAAAAGTACAAATTTC GCTCTGGGCATTGCTCTCTGCACCAATTTTGATTTCCTTCGACCTTACCG CAGCTCCTTCTGAAATCATTGACATTGTGAACAACCCACGAGTCCTTGCA ATTGACCAAGATCCAGCAGTCACACCAGCATTCCGTGTGGCTTCCAATTC CTCTGGAGTAGAAACATGGATTAAGAACCTTTCTACTGGTGACTTTGCTG TGGGACTACTCAACCGAGGAGAAACAGCTGGTGACATCACTGTGTATTGG TCCAACCTCAACGTTACCAACACCACTACCCTCGAAATTACCGACGCATG GTCAGGAAAGAGCCTTGGTGAACACACTACCTCTTACACTGCCCAAGCAG TAGCTCCACATTCCTGCACCCTTATCACTCTTGACAAGAAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66036:12..955+

>mRNA_M-pyrifera_M_contig66036.16035.1 ID=mRNA_M-pyrifera_M_contig66036.16035.1|Name=mRNA_M-pyrifera_M_contig66036.16035.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig66036:12..955+ (Macrocystis pyrifera P11B4 male)
GGCACATACACATCTGCCACCTCCTTGACTTGCCAAGACCGTCCAGGATC
TTACCAGCACGAAAAGGAAGATGGTGCCTACTATGTCCAAAACAAAATCA
CCTACATCAAGGGCACATACACATCTGCCACCTCCTTGACTTGCCAAGAC
CGTCCAGGATCTTACCAGCACGAAAAGGAAGATGGTGCCTACTATGTCCA
AAACAAAATCACCTACATCAAGATTGATGATTGTGGTGGAACGAGATGGA
AGGCGTCAAATGAGTCTTGGATCCGCTTCAAGCAAGAGTTTGAGACTCTT
GGAGTGATTGATGACATGGTGCGATCTGTGGAGTATTGCCACCCTGGTGA
TGAATGCAACCAGTGGATTCGGGATGTGGCGAATATGTGGCGAGTGAGTG
CTGATATTCAAGCAACATTTGGCTCTGTGTTGAACAATGCTGATGCTGGG
TTGGGATCTCGCTTGACACAACGTGTTGGGCACTACAATGACCCCGACAT
GGCAGAGACTGGACAACCTGGTTTGACGATTGACGAACAAAAAGTACAAA
TTTCGCTCTGGGCATTGCTCTCTGCACCAATTTTGATTTCCTTCGACCTT
ACCGCAGCTCCTTCTGAAATCATTGACATTGTGAACAACCCACGAGTCCT
TGCAATTGACCAAGATCCAGCAGTCACACCAGCATTCCGTGTGGCTTCCA
ATTCCTCTGGAGTAGAAACATGGATTAAGAACCTTTCTACTGGTGACTTT
GCTGTGGGACTACTCAACCGAGGAGAAACAGCTGGTGACATCACTGTGTA
TTGGTCCAACCTCAACGTTACCAACACCACTACCCTCGAAATTACCGACG
CATGGTCAGGAAAGAGCCTTGGTGAACACACTACCTCTTACACTGCCCAA
GCAGTAGCTCCACATTCCTGCACCCTTATCACTCTTGACAAGAAATAGAT
TGATGATTGTGGTGGAACGAGATGGAAGGCGTCAAATGAGTCTTGGATCC
GCTTCAAGCAAGAGTTTGAGACTCTTGGAGTGATTGATGACATGGTGCGA
TCTGTGGAGTATTGCCACCCTGGTGATGAATGCAACCAGTGGATTCGGGA
TGTGGCGAATATGTGGCGAGTGAGTGCTGATATTCAAGCAACATTTGGCT
CTGTGTTGAACAATGCTGATGCTGGGTTGGGATCTCGCTTGACACAACGT
GTTGGGCACTACAATGACCCCGACATGGCAGAGACTGGACAACCTGGTTT
GACGATTGACGAACAAAAAGTACAAATTTCGCTCTGGGCATTGCTCTCTG
CACCAATTTTGATTTCCTTCGACCTTACCGCAGCTCCTTCTGAAATCATT
GACATTGTGAACAACCCACGAGTCCTTGCAATTGACCAAGATCCAGCAGT
CACACCAGCATTCCGTGTGGCTTCCAATTCCTCTGGAGTAGAAACATGGA
TTAAGAACCTTTCTACTGGTGACTTTGCTGTGGGACTACTCAACCGAGGA
GAAACAGCTGGTGACATCACTGTGTATTGGTCCAACCTCAACGTTACCAA
CACCACTACCCTCGAAATTACCGACGCATGGTCAGGAAAGAGCCTTGGTG
AACACACTACCTCTTACACTGCCCAAGCAGTAGCTCCACATTCCTGCACC
CTTATCACTCTTGACAAGAAATAG
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