mRNA_M-pyrifera_M_contig65991.16022.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65991.16022.1
Unique NamemRNA_M-pyrifera_M_contig65991.16022.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A6H5KMX5_9PHAE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMX5_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 9.560e-37
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYE EFGRVKGHFGPINALAINPNGLSYASG+EDG
Sbjct:  245 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYETEFGRVKGHFGPINALAINPNGLSYASGSEDG 310
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A7S2RQ21_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RQ21_9STRA)

HSP 1 Score: 129 bits (324), Expect = 9.230e-35
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +H+ILGGGQ+AMSVTTTS  VGKFESRFFH++YEEEFGRVKGHFGPINALAINPNGLSYASGAEDG
Sbjct:  248 DHIILGGGQEAMSVTTTSGKVGKFESRFFHLVYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 313
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BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A835ZF13_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF13_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.800e-33
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +H++LGGGQDAMSVTTT S VGKFE+RF+HMIYEEEFGRVKGHFGPINALAINP+GLSY SGAEDG
Sbjct:  245 DHILLGGGQDAMSVTTTGSRVGKFETRFYHMIYEEEFGRVKGHFGPINALAINPDGLSYCSGAEDG 310
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A7S2UU51_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UU51_9STRA)

HSP 1 Score: 120 bits (300), Expect = 8.260e-33
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +H++LGGGQ+AMSVTTT+  VGKFE+RFFH++YEEEFG VKGHFGPINAL INPNG SYASGAEDG
Sbjct:   80 DHILLGGGQEAMSVTTTAGKVGKFETRFFHLVYEEEFGTVKGHFGPINALGINPNGRSYASGAEDG 145
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A7S2V5S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5S2_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.000e-32
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +HV+LGGGQ+AMSVTTT S VGKFE+RF+H++YE EFGRVKGHFGPINAL INP+G SYASGAEDG
Sbjct:   98 DHVLLGGGQEAMSVTTTDSRVGKFETRFYHLVYEREFGRVKGHFGPINALGINPDGKSYASGAEDG 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A6U3VY90_9STRA (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Thalassiosirales TaxID=33847 RepID=A0A6U3VY90_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.250e-32
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +H++LGGGQ+AMSVTTTS  VGKFE+RFFH++YEEEFG VKGHFGPINALAINPNG SYASGAEDG
Sbjct:  250 DHILLGGGQEAMSVTTTSGKVGKFETRFFHLVYEEEFGSVKGHFGPINALAINPNGRSYASGAEDG 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A7R9ZSR1_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSR1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.370e-32
Identity = 54/66 (81.82%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +H++LGGGQ+AMSVTTTS  VGKFE+RFFH++YEEEFG VKGHFGPINA+AINPNGL+YASGAEDG
Sbjct:  242 DHILLGGGQEAMSVTTTSGKVGKFETRFFHLVYEEEFGCVKGHFGPINAIAINPNGLNYASGAEDG 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A8K1C2P4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2P4_PYTOL)

HSP 1 Score: 121 bits (304), Expect = 1.130e-31
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            EHV+LGGGQ+AMSVTTTS  VGKFE+RFFHMIY+EEFGRVKGHFGPIN +A +PNG SYASGAEDG
Sbjct:  289 EHVVLGGGQEAMSVTTTSGRVGKFEARFFHMIYQEEFGRVKGHFGPINTIAFHPNGKSYASGAEDG 354
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A7S1DBX8_CYCTE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBX8_CYCTE)

HSP 1 Score: 121 bits (303), Expect = 1.160e-31
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +H++LGGGQ+AMSVTTTS  VGKFE+RFFH++YEEEFG VKGHFGPINALAINPNG S+ASGAEDG
Sbjct:  249 DHILLGGGQEAMSVTTTSGKVGKFETRFFHLVYEEEFGTVKGHFGPINALAINPNGRSFASGAEDG 314
[Close]
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Match: A0A7S2NVM0_9STRA (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVM0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.540e-31
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINALAINPNGLSYASGAEDG 198
            +H++LGGGQ+AMSVTTT+  VGKFE+RFFH++YEEEFG VKGHFGPINAL INPNGLSYASGAEDG
Sbjct:  250 DHILLGGGQEAMSVTTTAGKVGKFETRFFHLVYEEEFGIVKGHFGPINALDINPNGLSYASGAEDG 315
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65991.16022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMX5_9PHAE9.560e-3796.97Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2RQ21_9STRA9.230e-3589.39Eukaryotic translation initiation factor 3 subunit... [more]
A0A835ZF13_9STRA1.800e-3386.36Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2UU51_9STRA8.260e-3380.30Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2V5S2_9STRA2.000e-3280.30Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6U3VY90_9STRA3.250e-3283.33Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9ZSR1_9STRA3.370e-3281.82Eukaryotic translation initiation factor 3 subunit... [more]
A0A8K1C2P4_PYTOL1.130e-3183.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1DBX8_CYCTE1.160e-3181.82Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2NVM0_9STRA1.540e-3181.82Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65991contigM-pyrifera_M_contig65991:185..385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog35128.Thaps26686
Preferred nameTIF34
KEGG rclassRC00055,RC00523
KEGG koko:K03246,ko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,ko03013,map00970,map03013
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0001525,GO:0001568,GO:0001732,GO:0001889,GO:0001944,GO:0002040,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009653,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0035239,GO:0035295,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048513,GO:0048514,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051716,GO:0061008,GO:0065003,GO:0070013,GO:0070887,GO:0070993,GO:0071214,GO:0071470,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0072358,GO:0072359,GO:0080008,GO:0097159,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.Eukaryotic translation initiation factor 3 subunit I
EggNOG OGs2XBXQ@2836,KOG0643@1,KOG0643@2759
EC6.1.1.6
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.8236363-CDS-M-pyrifera_M_contig65991:184..3851622816548.8236363-CDS-M-pyrifera_M_contig65991:184..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65991 185..385 -
1692278040.5187783-CDS-M-pyrifera_M_contig65991:184..3851692278040.5187783-CDS-M-pyrifera_M_contig65991:184..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65991 185..385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65991.16022.1prot_M-pyrifera_M_contig65991.16022.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65991 185..385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65991.16022.1

>prot_M-pyrifera_M_contig65991.16022.1 ID=prot_M-pyrifera_M_contig65991.16022.1|Name=mRNA_M-pyrifera_M_contig65991.16022.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
EHVILGGGQDAMSVTTTSSNVGKFESRFFHMIYEEEFGRVKGHFGPINAL
AINPNGLSYASGAEDG*
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mRNA from alignment at M-pyrifera_M_contig65991:185..385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65991.16022.1 ID=mRNA_M-pyrifera_M_contig65991.16022.1|Name=mRNA_M-pyrifera_M_contig65991.16022.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig65991:185..385- (Macrocystis pyrifera P11B4 male)
GAGCACGTCATCCTGGGCGGAGGGCAGGACGCCATGTCTGTAACCACCAC
TTCTTCCAACGTGGGCAAGTTCGAGAGTCGGTTTTTCCACATGATCTACG
AGGAGGAGTTCGGGCGAGTGAAGGGACACTTCGGACCCATCAACGCCCTG
GCGATCAACCCGAACGGGCTCAGCTACGCGTCGGGGGCGGAGGACGGGTG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65991:185..385-

>mRNA_M-pyrifera_M_contig65991.16022.1 ID=mRNA_M-pyrifera_M_contig65991.16022.1|Name=mRNA_M-pyrifera_M_contig65991.16022.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig65991:185..385- (Macrocystis pyrifera P11B4 male)
GAGCACGTCATCCTGGGCGGAGGGCAGGACGCCATGTCTGTAACCACCAC
TTCTTCCAACGTGGGCAAGTTCGAGAGTCGGTTTTTCCACATGATCTACG
AGGAGGAGTTCGGGCGAGTGAAGGGACACTTCGGACCCATCAACGCCCTG
GCGATCAACCCGAACGGGCTCAGCTACGCGTCGGGGGCGGAGGACGGGTG
AGAGCACGTCATCCTGGGCGGAGGGCAGGACGCCATGTCTGTAACCACCA
CTTCTTCCAACGTGGGCAAGTTCGAGAGTCGGTTTTTCCACATGATCTAC
GAGGAGGAGTTCGGGCGAGTGAAGGGACACTTCGGACCCATCAACGCCCT
GGCGATCAACCCGAACGGGCTCAGCTACGCGTCGGGGGCGGAGGACGGGT
GA
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