mRNA_M-pyrifera_M_contig65970.16018.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65970.16018.1
Unique NamemRNA_M-pyrifera_M_contig65970.16018.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: UPI001ADFBC53 (alpha/beta hydrolase n=1 Tax=Roseomonas sp. SG15 TaxID=2820811 RepID=UPI001ADFBC53)

HSP 1 Score: 63.2 bits (152), Expect = 6.740e-10
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   28 PVEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWVTIPEAGHAPSLYDDESCALITHFLS 249
            PV DVDL  +W  + AQ +LVIRG+ES +L+E TAA M     DTR  V  P  GHAP+L D +  A++  FLS
Sbjct:  213 PVVDVDLWPVWKTL-AQPILVIRGAESDLLDEATAAAMA-ARPDTRLAV-FPRCGHAPALIDSDQTAVVAEFLS 283          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: A0A840Y4Q8_9PROT (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Roseomonas pecuniae TaxID=693023 RepID=A0A840Y4Q8_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 1.780e-8
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   31 VEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWVTIPEAGHAPSLYDDESCALITHFLS 249
            + DVDL  +W+A+S   VLV+RG+ES +LEE TAA+M        T  TIP  GHAP L D     LI  FLS
Sbjct:  214 IADVDLWPVWEAVSPP-VLVLRGAESDLLEEGTAARMA--ERPGVTLATIPGCGHAPGLVDPVQTDLIVDFLS 283          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: A0A317FCL0_9PROT (Alpha/beta hydrolase n=2 Tax=Falsiroseomonas bella TaxID=2184016 RepID=A0A317FCL0_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 2.330e-8
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   22 DKPVEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWV---TIPEAGHAPSLYDDESCALITHFL 246
            D P   VDL  +W  +     LVIRG+ES IL+EETAA M      TRT V   T+P  GHAP+L D    AL++ FL
Sbjct:  206 DAPTGPVDLAAIWSLVRLP-TLVIRGAESDILDEETAADMA-----TRTGVELVTLPGIGHAPALMDPAQIALVSGFL 277          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: UPI001E39056A (alpha/beta hydrolase n=2 Tax=Roseomonas TaxID=125216 RepID=UPI001E39056A)

HSP 1 Score: 57.8 bits (138), Expect = 6.520e-8
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   28 PVEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWVTIPEAGHAPSLYDDESCALITHFLS 249
            P+ DVDL  +WDA++   VLV+RG+ES +L+E TAA+M          V +   GHAP+L +    A+I  FLS
Sbjct:  217 PIADVDLWPVWDALTPP-VLVLRGAESDLLDEATAARMA--TRPKTLLVNVAGCGHAPALMEHAQTAVIAEFLS 287          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: A0A502GGG3_9PROT (Alpha/beta fold hydrolase n=1 Tax=Roseomonas nepalensis TaxID=1854500 RepID=A0A502GGG3_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 8.910e-8
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   28 PVEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWVTIPEAGHAPSLYDDESCALITHFLS 249
            P  D+DL  +W+A++   +LV+RG+ES +L+E TAA+M   A      V +   GHAP+L D    A+I  FLS
Sbjct:  215 PAADIDLWPVWEALTPP-ILVLRGAESDLLDEATAARMA--ARPKTLLVNVAGCGHAPALMDHAQTAVIAEFLS 285          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: A0A1M6IK07_9PROT (Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax=Roseomonas rosea TaxID=198092 RepID=A0A1M6IK07_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 3.630e-6
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   31 VEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWVTIPEAGHAPSLYDDESCALITHFL 246
            + D+DL  +W+ +  Q +LV+RG+ES +L+E TAA M   A      VTI   GHAP L D    A +  FL
Sbjct:  181 ITDIDLWPVWETLR-QPILVLRGAESDLLDETTAAAMA--ARPGTRLVTITGCGHAPGLIDPAQTAALADFL 249          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: A0A355WLI2_9RHOB (Alpha/beta hydrolase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A355WLI2_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 7.260e-6
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   37 DVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWVTIPEAGHAPSLYDDESCALITHFL 246
            DVDL  L+DAM+   + ++RG+ S++L EETAA+M     D   +  +P+  H P L + E  A+IT FL
Sbjct:  203 DVDLWPLFDAMTGLPLALLRGANSSLLTEETAAEMRRRRPDM-LFANVPDRAHIPFLDEPECLAIITAFL 271          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: UPI001F2BD651 (alpha/beta hydrolase n=1 Tax=Roseomonas sp. NPKOSM-4 TaxID=2911368 RepID=UPI001F2BD651)

HSP 1 Score: 52.0 bits (123), Expect = 7.400e-6
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   40 VDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWV---TIPEAGHAPSLYDDESCALITHFL 246
            VDL ++W  + A   LV+RG+ES IL+EETAA+M +     R  V   T+P  GHAP+L D +  A +  FL
Sbjct:  213 VDLALVWSRV-ALPTLVLRGAESDILDEETAAEMAM-----RPGVRLETLPGIGHAPALTDPDQIARVLRFL 278          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: A0A1I0B1F9_9PROT (Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1I0B1F9_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 1.440e-5
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   34 EDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLGAEDTRTWVTIPEAGHAPSLYDDESCALITHFL 246
            +DVDL   WD + A   LVIRG++S +L+ ETA +M        T + +P  GHAP L D++  +++  FL
Sbjct:  225 DDVDLWQYWDMLQAP-TLVIRGTDSDVLQAETAVQMQQRG-PRATVIELPGIGHAPILLDNKQVSIVKDFL 293          
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Match: UPI001C203896 (alpha/beta hydrolase n=1 Tax=Falsiroseomonas tokyonensis TaxID=430521 RepID=UPI001C203896)

HSP 1 Score: 50.1 bits (118), Expect = 3.610e-5
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    7 LPLPEDK---PVEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVL--GAEDTRTWVTIPEAGHAPSLYDDESCALITHFL 246
            LPL E +   P   +DL  +W A+  Q VL++RG+ES +LEE TAA M    G E      T+P  GHAP+L   +  A I  FL
Sbjct:  201 LPLAEAEKGAPSGPIDLRPIWQAVR-QPVLILRGAESDVLEEATAAAMAQRPGVE----LATLPGIGHAPALMAPDQVARILAFL 280          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65970.16018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
UPI001ADFBC536.740e-1050.00alpha/beta hydrolase n=1 Tax=Roseomonas sp. SG15 T... [more]
A0A840Y4Q8_9PROT1.780e-849.32Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax... [more]
A0A317FCL0_9PROT2.330e-847.44Alpha/beta hydrolase n=2 Tax=Falsiroseomonas bella... [more]
UPI001E39056A6.520e-843.24alpha/beta hydrolase n=2 Tax=Roseomonas TaxID=1252... [more]
A0A502GGG3_9PROT8.910e-841.89Alpha/beta fold hydrolase n=1 Tax=Roseomonas nepal... [more]
A0A1M6IK07_9PROT3.630e-641.67Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax... [more]
A0A355WLI2_9RHOB7.260e-641.43Alpha/beta hydrolase n=1 Tax=Rhodobacteraceae bact... [more]
UPI001F2BD6517.400e-644.44alpha/beta hydrolase n=1 Tax=Roseomonas sp. NPKOSM... [more]
A0A1I0B1F9_9PROT1.440e-539.44Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax... [more]
UPI001C2038963.610e-542.35alpha/beta hydrolase n=1 Tax=Falsiroseomonas tokyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65970contigM-pyrifera_M_contig65970:932..1183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog1123060.JONP01000004_gene575
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydrolases or acyltransferases (alpha beta hydrolase superfamily)
EggNOG OGs1NTH9@1224,2JQWG@204441,2TWFW@28211,COG2267@1,COG2267@2
COG Functional cat.I
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.5512826-CDS-M-pyrifera_M_contig65970:931..11831622816548.5512826-CDS-M-pyrifera_M_contig65970:931..1183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65970 932..1183 -
1692278040.3324482-CDS-M-pyrifera_M_contig65970:931..11831692278040.3324482-CDS-M-pyrifera_M_contig65970:931..1183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65970 932..1183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65970.16018.1prot_M-pyrifera_M_contig65970.16018.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65970 932..1183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65970.16018.1

>prot_M-pyrifera_M_contig65970.16018.1 ID=prot_M-pyrifera_M_contig65970.16018.1|Name=mRNA_M-pyrifera_M_contig65970.16018.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
PPLPLPEDKPVEDVDLTVLWDAMSAQRVLVIRGSESTILEEETAAKMVLG
AEDTRTWVTIPEAGHAPSLYDDESCALITHFLS*
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mRNA from alignment at M-pyrifera_M_contig65970:932..1183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65970.16018.1 ID=mRNA_M-pyrifera_M_contig65970.16018.1|Name=mRNA_M-pyrifera_M_contig65970.16018.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig65970:932..1183- (Macrocystis pyrifera P11B4 male)
CCACCACTTCCTCTTCCCGAAGACAAGCCTGTGGAAGACGTTGATCTGAC TGTGTTGTGGGATGCAATGTCCGCTCAAAGAGTCCTTGTCATTCGTGGCA GTGAATCGACCATTTTAGAAGAGGAAACTGCAGCGAAAATGGTCCTTGGT GCTGAAGACACAAGAACGTGGGTGACGATTCCAGAAGCTGGACATGCTCC ATCGCTCTATGACGACGAATCATGTGCTCTCATCACTCACTTCCTCTCAT AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65970:932..1183-

>mRNA_M-pyrifera_M_contig65970.16018.1 ID=mRNA_M-pyrifera_M_contig65970.16018.1|Name=mRNA_M-pyrifera_M_contig65970.16018.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig65970:932..1183- (Macrocystis pyrifera P11B4 male)
CCACCACTTCCTCTTCCCGAAGACAAGCCTGTGGAAGACGTTGATCTGAC
TGTGTTGTGGGATGCAATGTCCGCTCAAAGAGTCCTTGTCATTCGTGGCA
GTGAATCGACCATTTTAGAAGAGGAAACTGCAGCGAAAATGGTCCTTGGT
GCTGAAGACACAAGAACGTGGGTGACGATTCCAGAAGCTGGACATGCTCC
ATCGCTCTATGACGACGAATCATGTGCTCTCATCACTCACTTCCTCTCAT
AACCACCACTTCCTCTTCCCGAAGACAAGCCTGTGGAAGACGTTGATCTG
ACTGTGTTGTGGGATGCAATGTCCGCTCAAAGAGTCCTTGTCATTCGTGG
CAGTGAATCGACCATTTTAGAAGAGGAAACTGCAGCGAAAATGGTCCTTG
GTGCTGAAGACACAAGAACGTGGGTGACGATTCCAGAAGCTGGACATGCT
CCATCGCTCTATGACGACGAATCATGTGCTCTCATCACTCACTTCCTCTC
ATAA
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