mRNA_M-pyrifera_M_contig65969.16016.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65969.16016.1
Unique NamemRNA_M-pyrifera_M_contig65969.16016.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A8B6GHX8_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GHX8_MYTGA)

HSP 1 Score: 67.4 bits (163), Expect = 2.090e-11
Identity = 36/117 (30.77%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    4 DQVFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGI--IVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELIESLMDEPVLLEVF 348
            +  F A D  + GT++  EFL+ L   C  +   RL+ +FD++D+DG+G++   E + I  I         A    P+    A ++    D++KD ++T+EE I + M++PVL  +F
Sbjct:   66 EHYFRAADKNKSGTINFTEFLMFLNHECTSNPEERLNWMFDLFDIDGNGTIERPEMINIYKIALDVNEKKSAGDPTPD--EIAEKMFECCDKNKDDKLTKEEFITTFMEDPVLFAIF 180          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: B7PDQ2_IXOSC (NADPH oxidase, putative (Fragment) n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7PDQ2_IXOSC)

HSP 1 Score: 63.9 bits (154), Expect = 1.990e-9
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 1
Query:    4 DQVFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGIIVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELIESLMDEPVLLE 342
            D++F   DT + GTV   EF+ A+ R  + S   +L+LLF++YDVDGDG +  NE   ++       G+  +  PE+      L    DRD    ++ EEL   L   P L E
Sbjct:   44 DRMFQLFDTDRSGTVSLDEFMAAVKRFANKSQDDKLALLFELYDVDGDGMIQPNELRDVMKACMEENGLQFS-DPELDELTQVLFEDADRDDTNSISFEELRTQLQSRPGLYE 155          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A6P7V4N9_IXOSC (NADPH oxidase 5 n=2 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7V4N9_IXOSC)

HSP 1 Score: 63.9 bits (154), Expect = 2.020e-9
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 1
Query:    4 DQVFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGIIVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELIESLMDEPVLLE 342
            D++F   DT + GTV   EF+ A+ R  + S   +L+LLF++YDVDGDG +  NE   ++       G+  +  PE+      L    DRD    ++ EEL   L   P L E
Sbjct:   53 DRMFQLFDTDRSGTVSLDEFMAAVKRFANKSQDDKLALLFELYDVDGDGMIQPNELRDVMKACMEENGLQFS-DPELDELTQVLFEDADRDDTNSISFEELRTQLQSRPGLYE 164          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A0X3P222_SCHSO (Neuronal calcium sensor 2 n=4 Tax=Eucestoda TaxID=6200 RepID=A0A0X3P222_SCHSO)

HSP 1 Score: 61.6 bits (148), Expect = 3.300e-9
Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   10 VFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGII---VKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELIESLMDEPVLL 339
            VF   D    G +D  EFL+A+        + +L   + MYD+DG+G++  NE V II       G  G +A L PE  +   E+   +D +KDG +TR+E +   + +  LL
Sbjct:   71 VFRTFDKDNSGKIDFKEFLLAINITSGGRPKEKLEWAYQMYDIDGNGTIERNEMVEIIRAIYSMLGADGSSAELSPE--ARTEEIFAKMDENKDGVLTRDEFMNGCLSDQYLL 181          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A6J8EV50_MYTCO (Lactase-phlorizin hydrolase,Myrosinase 1,Beta-glucosidase 1B,Lactase-like protein,Beta-glucosidase 1A n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EV50_MYTCO)

HSP 1 Score: 62.8 bits (151), Expect = 5.020e-9
Identity = 33/115 (28.70%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    4 DQVFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGIIVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELIESLMDEPVLLEVF 348
            +  F A D  + G ++  EFL+ L   C  +   RL+ +FD++D+DG+G++   E + I           +   P     A ++    D++KD ++T+EE I + M++PVL  +F
Sbjct:  558 EHYFRAADKNKSGKINFKEFLMFLNHECTSNPEERLNWMFDLFDIDGNGTIERPEMIDIYKIALDVNEKKSPGDPTPDDIAEKMFECCDKNKDDKLTKEEFITTFMEDPVLFAIF 672          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A1V9Y1W6_9ACAR (Neurocalcin-delta A-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9Y1W6_9ACAR)

HSP 1 Score: 61.2 bits (147), Expect = 5.770e-9
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    4 DQVFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGIIVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELI 309
            + VF  +D   DG VD  EFL  LA V + +  ++L   F +YDVDGDG ++V E   I  +Q    G      P+  S AS L    D + DG++  EE +
Sbjct:   80 EHVFRMIDIDHDGNVDFREFLTCLAVVLNGNPEQKLKRAFCLYDVDGDGFITVKELASIF-QQVQLTGKMVLSNPQNSSCASNLIARFDANGDGQLDFEEFV 180          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A4S4N3T3_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4N3T3_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 1.030e-8
Identity = 35/118 (29.66%), Postives = 60/118 (50.85%), Query Frame = 1
Query:    4 DQVFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGIIVKQAGHYGIAATLP-----PEILSFASELATALDRDKDGEVTREELIESLMDEPVLLE 342
            D VF   D  ++GT+D  EF+ AL+         +L   F +YD+DGDG+++ +E + I+       G    LP     PE      ++   +DRDKD ++T +E +E    +P +++
Sbjct:   55 DYVFNVFDENKNGTIDFKEFICALSITSRGRLDEKLKWAFQLYDIDGDGTITYSEMLQIVQSIYKMTGQMVKLPADEDTPE--KRVDKIFKNMDRDKDSKLTYDEFVEGSKQDPTIVQ 170          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A7S2TXC0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TXC0_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.380e-8
Identity = 34/118 (28.81%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   10 VFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGIIVKQAGHYGIAA--TLPPEILS-FASELATALDRDKDGEVTREELIESLMDEPVLLEVFAD 354
            +F A D  + GT++  E+++ ++     +AR ++SL F +YDVD  G ++  E V ++   A +   A   +L PE++  F +E+    D+ K+  +T +E + ++M+ P L+E  +D
Sbjct:   95 LFTAFDKNESGTINFREYVLGMSACSKGTAREKISLSFQVYDVDNSGKITQEEMVRVLTSVAKYEKGAKGESLDPEVIKKFVAEVFEKYDQRKNNVLTYDEYMRAVMNHPDLVEYRSD 212          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: A0A6J0B9M6_NEOLC (Kv channel-interacting protein 4 n=2 Tax=Diprioninae TaxID=410274 RepID=A0A6J0B9M6_NEOLC)

HSP 1 Score: 59.3 bits (142), Expect = 3.990e-8
Identity = 36/118 (30.51%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   10 VFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGIIVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELIESLMDEPVL---LEVFAD 354
            VF   DT +DG V   +FL  L+ +   +A  +LS +F +YD++GDG ++ +E + I+         + T+   +      L   +D +KDG ++REE + S M++  +   L VF D
Sbjct:  113 VFNTFDTNKDGLVSFGDFLTGLSLIVKGTAEEKLSWIFGLYDMNGDGHITRHEMLFIVSAIYEMVRTSQTIQRAVNRHVDRLFEKMDLNKDGVISREEFMTSCMNDQSICTQLTVFDD 230          
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Match: UPI000E6D6E02 (Kv channel-interacting protein 1-like n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D6E02)

HSP 1 Score: 58.2 bits (139), Expect = 4.200e-8
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   10 VFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDGSLSVNETVGI---IVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTREELIESLMDEPVLL 339
            VF  +   Q GTV+  EFL  L+RV   S + +LS +F +YDVDGDG +S +E + +   I +  G      + P         +   +D + DG VT +EL      +P LL
Sbjct:   39 VFKTIKHKQTGTVNFEEFLEILSRVARGSVQEKLSWVFTLYDVDGDGRISRSEMLAVVQAIYELLGRGTTPPSHPKAARDHVDRIFHLIDTNADGVVTPDELASWCTRDPALL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65969.16016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B6GHX8_MYTGA2.090e-1130.77Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
B7PDQ2_IXOSC1.990e-934.51NADPH oxidase, putative (Fragment) n=1 Tax=Ixodes ... [more]
A0A6P7V4N9_IXOSC2.020e-934.51NADPH oxidase 5 n=2 Tax=Ixodes scapularis TaxID=69... [more]
A0A0X3P222_SCHSO3.300e-932.74Neuronal calcium sensor 2 n=4 Tax=Eucestoda TaxID=... [more]
A0A6J8EV50_MYTCO5.020e-928.70Lactase-phlorizin hydrolase,Myrosinase 1,Beta-gluc... [more]
A0A1V9Y1W6_9ACAR5.770e-936.27Neurocalcin-delta A-like n=1 Tax=Tropilaelaps merc... [more]
A0A4S4N3T3_9APHY1.030e-829.66Uncharacterized protein n=1 Tax=Antrodiella citrin... [more]
A0A7S2TXC0_9EUKA1.380e-828.81Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6J0B9M6_NEOLC3.990e-830.51Kv channel-interacting protein 4 n=2 Tax=Diprionin... [more]
UPI000E6D6E024.200e-833.63Kv channel-interacting protein 1-like n=1 Tax=Hypo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65969contigM-pyrifera_M_contig65969:2..478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score73.2
Seed ortholog evalue9.5e-11
Seed eggNOG ortholog61622.XP_010384901.1
Preferred nameGUCA1C
KEGG koko:K08328
KEGG Pathwayko04744,map04744
Hectar predicted targeting categoryother localisation
GOsGO:0001750,GO:0003008,GO:0003674,GO:0005575,GO:0005623,GO:0005886,GO:0005929,GO:0006140,GO:0007154,GO:0007165,GO:0007600,GO:0007601,GO:0008047,GO:0008048,GO:0008150,GO:0008277,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010562,GO:0010646,GO:0010851,GO:0010853,GO:0016020,GO:0019219,GO:0019220,GO:0019222,GO:0022400,GO:0023051,GO:0023052,GO:0030234,GO:0030249,GO:0030250,GO:0030808,GO:0030810,GO:0031090,GO:0031253,GO:0031279,GO:0031281,GO:0031282,GO:0031284,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032101,GO:0032501,GO:0042995,GO:0043005,GO:0043085,GO:0043226,GO:0043227,GO:0044093,GO:0044422,GO:0044425,GO:0044441,GO:0044459,GO:0044463,GO:0044464,GO:0045935,GO:0045937,GO:0045981,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051171,GO:0051173,GO:0051174,GO:0051339,GO:0051349,GO:0051716,GO:0060170,GO:0062012,GO:0062013,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0097381,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098590,GO:0098772,GO:0120025,GO:0120038,GO:1900371,GO:1900373,GO:1900542,GO:1900544
EggNOG free text desc.Guanylate cyclase activator 1C
EggNOG OGs35EJ3@314146,363SS@314294,38EPM@33154,3BMVV@33208,3D492@33213,3JAWY@40674,488V2@7711,492Z5@7742,4MCNB@9443,COG5126@1,KOG0044@2759
COG Functional cat.T
Best tax levelCercopithecoidea
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.4727213-CDS-M-pyrifera_M_contig65969:1..1881622816548.4727213-CDS-M-pyrifera_M_contig65969:1..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65969 2..188 +
1692278040.2976573-CDS-M-pyrifera_M_contig65969:1..1881692278040.2976573-CDS-M-pyrifera_M_contig65969:1..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65969 2..188 +
1622816548.4860885-CDS-M-pyrifera_M_contig65969:305..4781622816548.4860885-CDS-M-pyrifera_M_contig65969:305..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65969 306..478 +
1692278040.312359-CDS-M-pyrifera_M_contig65969:305..4781692278040.312359-CDS-M-pyrifera_M_contig65969:305..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65969 306..478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65969.16016.1prot_M-pyrifera_M_contig65969.16016.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65969 2..478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65969.16016.1

>prot_M-pyrifera_M_contig65969.16016.1 ID=prot_M-pyrifera_M_contig65969.16016.1|Name=mRNA_M-pyrifera_M_contig65969.16016.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
VDQVFLALDTTQDGTVDALEFLVALARVCDPSARRRLSLLFDMYDVDGDG
SLSVNETVGIIVKQAGHYGIAATLPPEILSFASELATALDRDKDGEVTRE
ELIESLMDEPVLLEVFADSY
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mRNA from alignment at M-pyrifera_M_contig65969:2..478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65969.16016.1 ID=mRNA_M-pyrifera_M_contig65969.16016.1|Name=mRNA_M-pyrifera_M_contig65969.16016.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig65969:2..478+ (Macrocystis pyrifera P11B4 male)
GTAGATCAAGTGTTTCTTGCTCTTGATACCACACAAGATGGAACTGTGGA TGCTTTGGAGTTCCTTGTTGCTCTTGCAAGAGTCTGTGATCCATCTGCGA GACGACGACTGAGTCTACTCTTTGACATGTACGATGTGGATGGTGATGGC TCCTTGAGTGTGAATGAGACGGTTGGGATTATTGTAAGTGGGAGGAAAGA TGCACCACAAGTCACTAAAGCTGCAACACGATCCAGAAGAAGATCTATTG CAGAAGGGCGTGCGCAACGACGAAATTCCGCAGTGCTGGGAATCACTGGT GCAGAACAAGCAGGGCATTATGGAATTGCAGCAACACTTCCACCAGAAAT TCTCTCCTTTGCTTCAGAACTAGCTACTGCTCTAGATCGTGACAAGGATG GAGAAGTTACCCGAGAAGAGTTGATTGAGTCTTTGATGGATGAACCAGTG CTCCTGGAGGTGTTTGCAGATTCCTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65969:2..478+

>mRNA_M-pyrifera_M_contig65969.16016.1 ID=mRNA_M-pyrifera_M_contig65969.16016.1|Name=mRNA_M-pyrifera_M_contig65969.16016.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig65969:2..478+ (Macrocystis pyrifera P11B4 male)
GTAGATCAAGTGTTTCTTGCTCTTGATACCACACAAGATGGAACTGTGGA
TGCTTTGGAGTTCCTTGTTGCTCTTGCAAGAGTCTGTGATCCATCTGCGA
GACGACGACTGAGTCTACTCTTTGACATGTACGATGTGGATGGTGATGGC
TCCTTGAGTGTGAATGAGACGGTTGGGATTATTGTAAGTAGATCAAGTGT
TTCTTGCTCTTGATACCACACAAGATGGAACTGTGGATGCTTTGGAGTTC
CTTGTTGCTCTTGCAAGAGTCTGTGATCCATCTGCGAGACGACGACTGAG
TCTACTCTTTGACATGTACGATGTGGATGGTGATGGCTCCTTGAGTGTGA
ATGAGACGGTTGGGATTATTGTAAAACAAGCAGGGCATTATGGAATTGCA
GCAACACTTCCACCAGAAATTCTCTCCTTTGCTTCAGAACTAGCTACTGC
TCTAGATCGTGACAAGGATGGAGAAGTTACCCGAGAAGAGTTGATTGAGT
CTTTGATGGATGAACCAGTGCTCCTGGAGGTGTTTGCAGATTCCTATAAC
AAGCAGGGCATTATGGAATTGCAGCAACACTTCCACCAGAAATTCTCTCC
TTTGCTTCAGAACTAGCTACTGCTCTAGATCGTGACAAGGATGGAGAAGT
TACCCGAGAAGAGTTGATTGAGTCTTTGATGGATGAACCAGTGCTCCTGG
AGGTGTTTGCAGATTCCTAT
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