mRNA_M-pyrifera_M_contig65966.16015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65966.16015.1
Unique NamemRNA_M-pyrifera_M_contig65966.16015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A6N2DSU9_9ACTN (Fructose-bisphosphate aldolase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DSU9_9ACTN)

HSP 1 Score: 182 bits (462), Expect = 1.290e-54
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    7 KPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            +P+ FVFHGG G  A+E  EAI YGV+KMNIDTDLQWAFWDG+RAYEAD HDYLQGQIGNPEGDD+PNKK YDPR WLRAGE++FVARL QAF EL NVGTLA
Sbjct:  254 RPIDFVFHGGSGSSASEIAEAIGYGVVKMNIDTDLQWAFWDGVRAYEADMHDYLQGQIGNPEGDDRPNKKQYDPRVWLRAGESAFVARLKQAFEELNNVGTLA 356
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A4R7HZ79_9ACTN (Fructose-bisphosphate aldolase n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4R7HZ79_9ACTN)

HSP 1 Score: 182 bits (462), Expect = 1.390e-54
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:   10 PVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            PV FVFHGG G   AE  EAISYGV+KMNIDTDLQWAFWDG+R YEADKHDYLQGQIGNPEGDD+PNKK YDPR WLRAGE +FV RL QAFAEL NVGTLA
Sbjct:  258 PVDFVFHGGSGSSPAEIAEAISYGVVKMNIDTDLQWAFWDGVRGYEADKHDYLQGQIGNPEGDDKPNKKQYDPRVWLRAGEEAFVERLKQAFAELNNVGTLA 359
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A7Y1ZUM6_9ACTN (Fructose-bisphosphate aldolase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZUM6_9ACTN)

HSP 1 Score: 182 bits (461), Expect = 1.970e-54
Identity = 85/105 (80.95%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 AAKPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            A KPV+FVFHGG G  AAE EEAISYGVIKMNIDTDLQWAFWDG+RAY ADKHDYL+GQ+GNP+G D PNKK YDPR WLRA E SF  RL QAFAELKNVGTLA
Sbjct:  255 ADKPVNFVFHGGSGSTAAEIEEAISYGVIKMNIDTDLQWAFWDGVRAYHADKHDYLEGQLGNPDGADAPNKKYYDPRVWLRAAEVSFSTRLEQAFAELKNVGTLA 359
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A2G6KA24_9ACTN (Fructose-bisphosphate aldolase n=1 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A2G6KA24_9ACTN)

HSP 1 Score: 181 bits (459), Expect = 3.640e-54
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 AAKPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            A KPV FVFHGG G  AAE  EAISYGVIKMNIDTDLQWAFWDG+R YEA+ HDYLQGQIGNPEG DQPNKK YDPR+WLRAGE SFVAR+ QAF+EL N+ TLA
Sbjct:  252 APKPVDFVFHGGSGSSAAEIAEAISYGVIKMNIDTDLQWAFWDGVRGYEAEYHDYLQGQIGNPEGPDQPNKKKYDPRAWLRAGEDSFVARMKQAFSELNNIDTLA 356
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: UPI00034ABB73 (class II fructose-bisphosphate aldolase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034ABB73)

HSP 1 Score: 180 bits (456), Expect = 1.250e-53
Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    7 KPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            KPV+FVFHGG G  AAE +EA+ YGV+KMNIDTDLQWAFWDGIRAYEADKHDYLQGQ+GNP G D PNKK+YDPR WLRAGE SF  RL QAF EL NVGTLA
Sbjct:  262 KPVNFVFHGGSGSTAAEIDEALGYGVVKMNIDTDLQWAFWDGIRAYEADKHDYLQGQLGNPTGADAPNKKSYDPRVWLRAGETSFSTRLEQAFTELNNVGTLA 364
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: UPI000E34A2DB (class II fructose-bisphosphate aldolase n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E34A2DB)

HSP 1 Score: 179 bits (454), Expect = 2.440e-53
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    7 KPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            KPV FVFHGG G  AAE  EA+SYGV+KMNIDTDLQWA WDGIRA+EA+KHDYLQGQIGNPEG+D+PNKK YDPR WLRAGE SFV RL  AFAEL NVGTLA
Sbjct:  261 KPVDFVFHGGSGSSAAEIAEALSYGVVKMNIDTDLQWALWDGIRAFEAEKHDYLQGQIGNPEGEDKPNKKIYDPRVWLRAGEESFVKRLELAFAELNNVGTLA 363
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A2E3TW01_9ACTN (Fructose-bisphosphate aldolase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TW01_9ACTN)

HSP 1 Score: 175 bits (443), Expect = 1.010e-51
Identity = 80/103 (77.67%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    7 KPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            KPV+FVFHGG G  AAE EEA+SYGV+KMNIDTDLQWAFWDGIR YE+DKHDYLQGQ+GNP G D PNKK YDPR WLR+GE SF  RL QAF EL NV TLA
Sbjct:  258 KPVNFVFHGGSGSTAAEIEEALSYGVVKMNIDTDLQWAFWDGIRRYESDKHDYLQGQLGNPAGADAPNKKHYDPRVWLRSGEVSFAGRLEQAFRELNNVDTLA 360
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A3M0WTT0_9CHLR (Fructose-bisphosphate aldolase n=1 Tax=Candidatus Thermofonsia bacterium TaxID=2364220 RepID=A0A3M0WTT0_9CHLR)

HSP 1 Score: 171 bits (434), Expect = 2.090e-50
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    7 KPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTLA 315
            +P++FVFHGG G    E  EAISYGVIKMNIDTDLQWAFW+G+R YEA  HDYLQGQIGNPEGDD PNKK YDPR WLRAGE SFVARL QAF++L NV TLA
Sbjct:  255 RPLNFVFHGGSGSSLEEIREAISYGVIKMNIDTDLQWAFWNGVRQYEAKYHDYLQGQIGNPEGDDVPNKKYYDPRKWLRAGEESFVARLKQAFSDLNNVDTLA 357
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A7Y2N9L5_9ACTN (Fructose-bisphosphate aldolase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9L5_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 6.420e-49
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    4 AKPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKN 300
            + PV+FVFHGG G  AAE EEAISYGVIKMNIDTDLQWA WDGIR YEA+ HDYLQ QIGNP+G DQPNKK YDPR WLR GE SF+ARL QAF EL N
Sbjct:  257 SHPVNFVFHGGSGSTAAEIEEAISYGVIKMNIDTDLQWAMWDGIRRYEAENHDYLQSQIGNPDGPDQPNKKKYDPRVWLRKGEESFIARLDQAFTELGN 355
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BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Match: A0A6L3FBA9_9CHLR (Fructose-bisphosphate aldolase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3FBA9_9CHLR)

HSP 1 Score: 162 bits (409), Expect = 1.560e-48
Identity = 73/102 (71.57%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    7 KPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEADKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKNVGTL 312
            KP++FVFHGG G    E  EA+SYG IKMNIDTDLQWAFWDG+R Y+   HDYLQGQIGNP+GDD PNKK YDPR WLRA E SFV RL QAF +L NV TL
Sbjct:   95 KPLNFVFHGGSGSSQEEIREALSYGAIKMNIDTDLQWAFWDGLRNYDIKNHDYLQGQIGNPDGDDIPNKKFYDPRKWLRAAEDSFVTRLKQAFEDLNNVNTL 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65966.16015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N2DSU9_9ACTN1.290e-5479.61Fructose-bisphosphate aldolase n=1 Tax=Ilumatobact... [more]
A0A4R7HZ79_9ACTN1.390e-5482.35Fructose-bisphosphate aldolase n=2 Tax=Acidimicrob... [more]
A0A7Y1ZUM6_9ACTN1.970e-5480.95Fructose-bisphosphate aldolase n=1 Tax=Ilumatobact... [more]
A0A2G6KA24_9ACTN3.640e-5480.00Fructose-bisphosphate aldolase n=1 Tax=Ilumatobact... [more]
UPI00034ABB731.250e-5379.61class II fructose-bisphosphate aldolase n=1 Tax=Il... [more]
UPI000E34A2DB2.440e-5380.58class II fructose-bisphosphate aldolase n=1 Tax=De... [more]
A0A2E3TW01_9ACTN1.010e-5177.67Fructose-bisphosphate aldolase n=1 Tax=Ilumatobact... [more]
A0A3M0WTT0_9CHLR2.090e-5076.70Fructose-bisphosphate aldolase n=1 Tax=Candidatus ... [more]
A0A7Y2N9L5_9ACTN6.420e-4977.78Fructose-bisphosphate aldolase n=1 Tax=Acidimicrob... [more]
A0A6L3FBA9_9CHLR1.560e-4871.57Fructose-bisphosphate aldolase (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65966contigM-pyrifera_M_contig65966:989..1306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score164.9
Seed ortholog evalue2.1e-38
Seed eggNOG ortholog525373.HMPREF0766_13941
Preferred namefbaA
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01624
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167,M00344,M00345
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035375,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046914,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.Fructose-bisphosphate aldolase
EggNOG OGs1IPX5@117747,4NF5C@976,COG0191@1,COG0191@2
Ec32 ortholog descriptionKetose-bisphosphate aldolase, class-II
Ec32 orthologEc-10_000880.1
EC4.1.2.13
COG Functional cat.G
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.4386685-CDS-M-pyrifera_M_contig65966:988..13061622816548.4386685-CDS-M-pyrifera_M_contig65966:988..1306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65966 989..1306 -
1692278040.2833076-CDS-M-pyrifera_M_contig65966:988..13061692278040.2833076-CDS-M-pyrifera_M_contig65966:988..1306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65966 989..1306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65966.16015.1prot_M-pyrifera_M_contig65966.16015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65966 989..1306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65966.16015.1

>prot_M-pyrifera_M_contig65966.16015.1 ID=prot_M-pyrifera_M_contig65966.16015.1|Name=mRNA_M-pyrifera_M_contig65966.16015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
AAKPVHFVFHGGCGLCAAESEEAISYGVIKMNIDTDLQWAFWDGIRAYEA
DKHDYLQGQIGNPEGDDQPNKKTYDPRSWLRAGEASFVARLSQAFAELKN
VGTLA*
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mRNA from alignment at M-pyrifera_M_contig65966:989..1306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65966.16015.1 ID=mRNA_M-pyrifera_M_contig65966.16015.1|Name=mRNA_M-pyrifera_M_contig65966.16015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig65966:989..1306- (Macrocystis pyrifera P11B4 male)
GCCGCCAAGCCGGTCCACTTCGTCTTCCACGGTGGTTGCGGTTTGTGCGC
CGCCGAGAGCGAAGAAGCCATCTCGTATGGCGTCATCAAGATGAACATCG
ACACCGATCTCCAGTGGGCGTTCTGGGACGGCATTCGTGCCTACGAGGCC
GACAAGCACGACTATCTGCAGGGCCAGATCGGCAACCCCGAAGGCGACGA
CCAGCCCAACAAGAAGACCTACGATCCTCGTTCCTGGCTCCGTGCCGGTG
AGGCATCGTTCGTCGCCCGGCTCAGCCAGGCCTTCGCCGAACTAAAGAAC
GTCGGCACCCTCGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65966:989..1306-

>mRNA_M-pyrifera_M_contig65966.16015.1 ID=mRNA_M-pyrifera_M_contig65966.16015.1|Name=mRNA_M-pyrifera_M_contig65966.16015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig65966:989..1306- (Macrocystis pyrifera P11B4 male)
GCCGCCAAGCCGGTCCACTTCGTCTTCCACGGTGGTTGCGGTTTGTGCGC
CGCCGAGAGCGAAGAAGCCATCTCGTATGGCGTCATCAAGATGAACATCG
ACACCGATCTCCAGTGGGCGTTCTGGGACGGCATTCGTGCCTACGAGGCC
GACAAGCACGACTATCTGCAGGGCCAGATCGGCAACCCCGAAGGCGACGA
CCAGCCCAACAAGAAGACCTACGATCCTCGTTCCTGGCTCCGTGCCGGTG
AGGCATCGTTCGTCGCCCGGCTCAGCCAGGCCTTCGCCGAACTAAAGAAC
GTCGGCACCCTCGCCTGAGCCGCCAAGCCGGTCCACTTCGTCTTCCACGG
TGGTTGCGGTTTGTGCGCCGCCGAGAGCGAAGAAGCCATCTCGTATGGCG
TCATCAAGATGAACATCGACACCGATCTCCAGTGGGCGTTCTGGGACGGC
ATTCGTGCCTACGAGGCCGACAAGCACGACTATCTGCAGGGCCAGATCGG
CAACCCCGAAGGCGACGACCAGCCCAACAAGAAGACCTACGATCCTCGTT
CCTGGCTCCGTGCCGGTGAGGCATCGTTCGTCGCCCGGCTCAGCCAGGCC
TTCGCCGAACTAAAGAACGTCGGCACCCTCGCCTGA
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