mRNA_M-pyrifera_M_contig65966.16014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65966.16014.1
Unique NamemRNA_M-pyrifera_M_contig65966.16014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig65966.16014.1 vs. uniprot
Match: A0A7Y2GQV2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GQV2_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 2.200e-11
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:   16 NMAVIAGRVRTEPVLRSLANDEVLLTFDL-VSGNAPSVRTVPVSWQGAPRAAPKIDTDDSVVVLGTVQRRFFRAGGVTAHAVDVRAE-IVARTAAARRRLVAKALE 327
            N+ ++ G V  EP +  LA+ +  L+FD+ V  + PS  +VPV W GA    PK+  +  + V+GTV RRF+RAGG     V V  + IV R    +++ ++ AL+
Sbjct:    2 NLCILRGLVAGEPRIVELASGQTALSFDVRVQVDGPSAPSVPVEWTGAASRMPKVVANAPIAVVGTVARRFYRAGGAIQTRVYVAPQRIVVRQPRRQKKAISDALD 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig65966.16014.1 vs. uniprot
Match: A0A524NBP7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524NBP7_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 8.640e-10
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   16 NMAVIAGRVRTEPVLRSLANDEVLLTFDLVSG----NAPSVRTVPVSWQGAP-RAAPKIDTDDSVVVLGTVQRRFFRAGGVTAHAVDVRAEIV 279
            N+AV+ G VR EPV R+L    V++ FD+++      A S  TVPV+W   P R    +     ++V+G VQRRFFR GG T    +V AE V
Sbjct:   12 NVAVLRGAVRGEPVSRALPAGGVVVQFDVLTAVATHGAISNATVPVAWNDPPARLLACVVDGTELIVVGRVQRRFFRVGGATQSRTEVVAESV 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig65966.16014.1 vs. uniprot
Match: A0A7Y2GL38_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GL38_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 5.030e-9
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:   16 NMAVIAGRVRTEPVLRSLANDEVLLTFDL-VSGNAPSVRTVPVSWQGAPRAAPKIDTDDSVVVLGTVQRRFFRAGGVTAHAVDVRAEIVARTAAARRRLVAKALE 327
            N+AV+ G VR  P  R+L + + L+  ++ V        TVPV     P++  ++  D+ VVV+G VQRRFFRA G  A    V A  V   AA +RR VA+ LE
Sbjct:   19 NIAVLRGVVRRPPEWRTLPSGDELVQLEVRVERPGAPADTVPVELLHPPKSIARLRVDEPVVVVGRVQRRFFRAAGALASRTAVAATAV--VAATQRRRVARVLE 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig65966.16014.1 vs. uniprot
Match: A0A662DRQ1_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DRQ1_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 1.590e-7
Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    4 DQSGNMAVIAGRVRTEPVLRSLANDEVLLTFDL----VSGNAPSVRTVPVSWQGAPRAA-PKIDTDDSVVVLGTVQRRFFRAGGVTAHAVDV 264
            + + N+A++ G +  E V R L +   ++ FD+    + G      +VPVSW   P +A   I     V+V+GTV+RRFFRAGG T    +V
Sbjct:   11 ETTANLALLRGSIAGEQVSRDLPSGATVVQFDVSTTVIDGEKSKKVSVPVSWVDPPPSALAPIQAGLEVIVVGTVRRRFFRAGGSTQSRTEV 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig65966.16014.1 vs. uniprot
Match: A0A538F8J5_9ACTN (Single-stranded DNA-binding protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F8J5_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 2.680e-7
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  130 TVPVSWQGAPRAAPKIDTDDSVVVLGTVQRRFFRAGGVTAHAVDVRAEIV--ARTAAARRRLVAKA 321
            TVPV W   P +A  +D D++VVV+G V+RRFFRAGG T    +V A  V  AR A   RR++A A
Sbjct:   41 TVPVVWFDPPASAANLDVDETVVVVGRVRRRFFRAGGATQSRTEVVATSVVPARLARRARRIMAHA 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig65966.16014.1 vs. uniprot
Match: A0A7X9KIR1_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KIR1_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 6.070e-7
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:   16 NMAVIAGRVRTEPVLRSLANDEVLLTFDLVSGNAPSVRTVPVSWQGAPRAAPKIDTDDSVVVLGTVQRRFFRAGGVTAHAVDVRAEIVARTAAARRRLVAKALER 330
            N+ V+ G + ++PV R LA+  VL++ +L +       +VPV+W   P          S++V GTV+RRFFR GG+T    +V A  V  T   RRR    AL R
Sbjct:    2 NVVVLQGTLSSDPVSRVLASGSVLVSLELTTVVDGCSVSVPVAWFDPPLETAWA-AGQSLLVTGTVRRRFFRTGGLTQSRTEVVAAQVVPTG--RRRAARAALAR 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65966.16014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7Y2GQV2_9ACTN2.200e-1136.79Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A524NBP7_9ACTN8.640e-1041.94Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7Y2GL38_9ACTN5.030e-940.00Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A662DRQ1_9ACTN1.590e-735.87Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A538F8J5_9ACTN2.680e-750.00Single-stranded DNA-binding protein n=1 Tax=Actino... [more]
A0A7X9KIR1_9ACTN6.070e-737.14Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65966contigM-pyrifera_M_contig65966:592..936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.3889058-UTR-M-pyrifera_M_contig65966:591..6091622816548.3889058-UTR-M-pyrifera_M_contig65966:591..609Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65966 592..609 +
1692278040.2545779-UTR-M-pyrifera_M_contig65966:591..6091692278040.2545779-UTR-M-pyrifera_M_contig65966:591..609Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65966 592..609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.40514-CDS-M-pyrifera_M_contig65966:609..9361622816548.40514-CDS-M-pyrifera_M_contig65966:609..936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65966 610..936 +
1692278040.2722683-CDS-M-pyrifera_M_contig65966:609..9361692278040.2722683-CDS-M-pyrifera_M_contig65966:609..936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65966 610..936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65966.16014.1prot_M-pyrifera_M_contig65966.16014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65966 610..936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65966.16014.1

>prot_M-pyrifera_M_contig65966.16014.1 ID=prot_M-pyrifera_M_contig65966.16014.1|Name=mRNA_M-pyrifera_M_contig65966.16014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MAVIAGRVRTEPVLRSLANDEVLLTFDLVSGNAPSVRTVPVSWQGAPRAA
PKIDTDDSVVVLGTVQRRFFRAGGVTAHAVDVRAEIVARTAAARRRLVAK
ALERLEPI*
back to top

mRNA from alignment at M-pyrifera_M_contig65966:592..936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65966.16014.1 ID=mRNA_M-pyrifera_M_contig65966.16014.1|Name=mRNA_M-pyrifera_M_contig65966.16014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig65966:592..936+ (Macrocystis pyrifera P11B4 male)
AACGACCAGTCCGGCAACATGGCGGTCATCGCCGGCCGGGTTCGAACCGA
GCCGGTGCTGCGGTCACTCGCGAACGATGAGGTCTTGCTCACGTTCGACC
TGGTCAGCGGGAATGCTCCGAGCGTCCGCACCGTCCCGGTGTCGTGGCAG
GGAGCGCCGCGTGCAGCTCCGAAGATCGACACCGACGATTCGGTGGTCGT
CCTCGGAACGGTGCAACGACGGTTCTTCCGTGCCGGTGGTGTCACAGCAC
ACGCGGTCGATGTTCGGGCCGAGATCGTGGCTCGTACGGCCGCAGCCCGG
CGGAGACTCGTGGCCAAGGCCCTGGAACGACTCGAGCCGATCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig65966:592..936+

>mRNA_M-pyrifera_M_contig65966.16014.1 ID=mRNA_M-pyrifera_M_contig65966.16014.1|Name=mRNA_M-pyrifera_M_contig65966.16014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig65966:592..936+ (Macrocystis pyrifera P11B4 male)
ATGGCGGTCATCGCCGGCCGGGTTCGAACCGAGCCGGTGCTGCGGTCACT
CGCGAACGATGAGGTCTTGCTCACGTTCGACCTGGTCAGCGGGAATGCTC
CGAGCGTCCGCACCGTCCCGGTGTCGTGGCAGGGAGCGCCGCGTGCAGCT
CCGAAGATCGACACCGACGATTCGGTGGTCGTCCTCGGAACGGTGCAACG
ACGGTTCTTCCGTGCCGGTGGTGTCACAGCACACGCGGTCGATGTTCGGG
CCGAGATCGTGGCTCGTACGGCCGCAGCCCGGCGGAGACTCGTGGCCAAG
GCCCTGGAACGACTCGAGCCGATCTGAATGGCGGTCATCGCCGGCCGGGT
TCGAACCGAGCCGGTGCTGCGGTCACTCGCGAACGATGAGGTCTTGCTCA
CGTTCGACCTGGTCAGCGGGAATGCTCCGAGCGTCCGCACCGTCCCGGTG
TCGTGGCAGGGAGCGCCGCGTGCAGCTCCGAAGATCGACACCGACGATTC
GGTGGTCGTCCTCGGAACGGTGCAACGACGGTTCTTCCGTGCCGGTGGTG
TCACAGCACACGCGGTCGATGTTCGGGCCGAGATCGTGGCTCGTACGGCC
GCAGCCCGGCGGAGACTCGTGGCCAAGGCCCTGGAACGACTCGAGCCGAT
CTGA
back to top