mRNA_M-pyrifera_M_contig65944.16012.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65944.16012.1
Unique NamemRNA_M-pyrifera_M_contig65944.16012.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65944.16012.1 vs. uniprot
Match: A0A0F9GBY0_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9GBY0_9ZZZZ)

HSP 1 Score: 97.4 bits (241), Expect = 5.820e-25
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 MTTLLVCYTLSTFPDNRPLDKVVDIPKDIAPSKIPEFVKKAIRPSAQADPSDGFRGRNPSEVTLINLVNLDHLQPGT 231
            MT LLV YTL+T PD   +D VVD+P  + P +IP FV+K I P A ADP+DGFRGR+PS+V ++NLVNLD L+ G+
Sbjct:    1 MTKLLVSYTLTTRPDASAMDSVVDLPDSVTPEEIPGFVRKTICPPANADPTDGFRGRSPSQVVILNLVNLDSLRSGS 77
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BLAST of mRNA_M-pyrifera_M_contig65944.16012.1 vs. uniprot
Match: A0A1W6KFS4_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter salarius TaxID=1420917 RepID=A0A1W6KFS4_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 1.400e-11
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   10 LLVCYTLSTFPDNRPLDKVVDIPKDIAPSKIPEFVKKAIRPSAQADPSDGFRGRNPSEVTLINLVNLDHL 219
            LLV YTL    ++   ++ V + + + P+ I   VK+ IRP  +ADPSD +RG++PS++ ++NL+NL  L
Sbjct:    9 LLVTYTLQNSANSTIYERTVAVSRTLEPASIVPTVKQLIRPLKEADPSDNYRGQHPSQIDIVNLINLSTL 78
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65944.16012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0F9GBY0_9ZZZZ5.820e-2558.44Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A1W6KFS4_9GAMM1.400e-1140.00Uncharacterized protein n=1 Tax=Marinobacter salar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65944contigM-pyrifera_M_contig65944:16..252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.307274-CDS-M-pyrifera_M_contig65944:15..2521622816548.307274-CDS-M-pyrifera_M_contig65944:15..252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65944 16..252 +
1692278040.2186832-CDS-M-pyrifera_M_contig65944:15..2521692278040.2186832-CDS-M-pyrifera_M_contig65944:15..252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65944 16..252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65944.16012.1prot_M-pyrifera_M_contig65944.16012.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65944 16..252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65944.16012.1

>prot_M-pyrifera_M_contig65944.16012.1 ID=prot_M-pyrifera_M_contig65944.16012.1|Name=mRNA_M-pyrifera_M_contig65944.16012.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MTTLLVCYTLSTFPDNRPLDKVVDIPKDIAPSKIPEFVKKAIRPSAQADP
SDGFRGRNPSEVTLINLVNLDHLQPGTK*
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mRNA from alignment at M-pyrifera_M_contig65944:16..252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65944.16012.1 ID=mRNA_M-pyrifera_M_contig65944.16012.1|Name=mRNA_M-pyrifera_M_contig65944.16012.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig65944:16..252+ (Macrocystis pyrifera P11B4 male)
ATGACCACACTTCTTGTTTGCTATACCCTTTCTACTTTTCCCGATAACCG
CCCACTGGATAAAGTTGTCGATATTCCGAAAGATATCGCGCCCAGCAAGA
TTCCCGAATTCGTCAAAAAAGCCATACGCCCGTCAGCTCAGGCAGATCCT
AGCGATGGATTTCGAGGCAGAAACCCTTCTGAGGTAACGCTTATCAACCT
GGTTAATCTGGACCACCTGCAACCCGGTACGAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65944:16..252+

>mRNA_M-pyrifera_M_contig65944.16012.1 ID=mRNA_M-pyrifera_M_contig65944.16012.1|Name=mRNA_M-pyrifera_M_contig65944.16012.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig65944:16..252+ (Macrocystis pyrifera P11B4 male)
ATGACCACACTTCTTGTTTGCTATACCCTTTCTACTTTTCCCGATAACCG
CCCACTGGATAAAGTTGTCGATATTCCGAAAGATATCGCGCCCAGCAAGA
TTCCCGAATTCGTCAAAAAAGCCATACGCCCGTCAGCTCAGGCAGATCCT
AGCGATGGATTTCGAGGCAGAAACCCTTCTGAGGTAACGCTTATCAACCT
GGTTAATCTGGACCACCTGCAACCCGGTACGAAATAAATGACCACACTTC
TTGTTTGCTATACCCTTTCTACTTTTCCCGATAACCGCCCACTGGATAAA
GTTGTCGATATTCCGAAAGATATCGCGCCCAGCAAGATTCCCGAATTCGT
CAAAAAAGCCATACGCCCGTCAGCTCAGGCAGATCCTAGCGATGGATTTC
GAGGCAGAAACCCTTCTGAGGTAACGCTTATCAACCTGGTTAATCTGGAC
CACCTGCAACCCGGTACGAAATAA
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