mRNA_M-pyrifera_M_contig658.15981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig658.15981.1
Unique NamemRNA_M-pyrifera_M_contig658.15981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 8.000e-83
Identity = 119/144 (82.64%), Postives = 133/144 (92.36%), Query Frame = 1 
Query:    1 VTLYEEFSKYADRRAVAQDVIFEITSMDHFDDVVSRAAGADEASSDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDNS 432
            VTLYEEFS+YADRR+VAQ+VIFEITS +HF+DVVSRAAGADE   +GYEDAQGN R+PHKL+MV+IHAGWCRVCKGLQPKLLKLI+KHPEVLCCKINK  +EELA KLGVRGLPM+IFYK GKR+DH TTANINTIEE IRDN+
Sbjct:   25 VTLYEEFSRYADRRSVAQEVIFEITSAEHFEDVVSRAAGADE--HEGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHEELAAKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 166
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.600e-55
Identity = 79/141 (56.03%), Postives = 108/141 (76.60%), Query Frame = 1 
Query:    7 LYEEFSKYADRRAVAQDVIFEITSMDHFDDVVSRAAGADEASSDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDN 429
            +YEE SKYAD  AVA D + EITS +H D +++ AA  +   + GY D  GN R+PH+L+M+++HA WCR C G++PKLLKL ++HPEVLCCK+NK ++E++A +LG+R LP  + YK GKRIDHFTTA+I TIE+G+ DN
Sbjct:    1 MYEESSKYADPHAVATDCVVEITSNEHLDRILATAAQVENPDA-GYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHEDVAARLGIRALPTFVLYKNGKRIDHFTTADIETIEQGVLDN 140
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.030e-36
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1 
Query:   10 YEEFSKYADRRAVAQDVIFEITSMDHFDDVVSRAAGADEASSDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDN 429
            YEE S YAD  A A + + ++TS + FD ++S AAGA+  S D         + PHK++M+ +HA WCR CK L  + LK+   HPEVLC K+N  +N E+   LG+RG+P+ I YK GKRIDHF   N + +EE + DN
Sbjct:   75 YEECSFYADATACAMETLIDVTSQEQFDFIISHAAGANPLSPD---------QKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATNAEVGKSLGIRGVPLFIIYKAGKRIDHFYAENADDLEEQVEDN 205
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: A0A061S1S4_9CHLO (Thioredoxin-like chloroplastic-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1S4_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 4.610e-10
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  178 KLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGK-RIDHFTTA 393
            +L++V+ +A WC  C+GL P+L KL+ +HP+V   K+   SN  L   LGV+ LP   FY+  + R+D F+ +
Sbjct:   99 RLVIVDFYATWCHACRGLYPRLSKLMEEHPDVKLLKVEFESNRSLCKSLGVKVLPFFHFYRGNEGRLDAFSAS 171
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: A0A091VUE2_NIPNI (Thioredoxin (Fragment) n=2 Tax=Nipponia nippon TaxID=128390 RepID=A0A091VUE2_NIPNI)

HSP 1 Score: 60.5 bits (145), Expect = 2.760e-9
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  178 KLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 423
            KL++V+  A WC  CK ++P    L  K+ +V+  +I+    +++A    V+ +P   FYKKGK++  F+ AN   +EE I+
Sbjct:   12 KLIVVDFSATWCGPCKMIKPFFHSLCEKYADVVFIEIDVDDAQDVATHCDVKCMPTFQFYKKGKKVQEFSGANKEKLEETIK 93
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: A0A093BLW0_CHAPE (Thioredoxin (Fragment) n=2 Tax=Chaetura pelagica TaxID=8897 RepID=A0A093BLW0_CHAPE)

HSP 1 Score: 60.5 bits (145), Expect = 2.830e-9
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  178 KLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 423
            KL++V+  A WC  CK ++P    L+ K+ +V+  +I+    +++A    V+ +P   FYK GK++  F+ AN   +EE I+
Sbjct:   12 KLIVVDFSATWCGPCKMIKPFFHSLVEKYGDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 93
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: UPI001CF9EFDD (thioredoxin-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF9EFDD)

HSP 1 Score: 60.1 bits (144), Expect = 4.940e-9
Identity = 28/81 (34.57%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:  178 KLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGI 420
            KL++ +  A WC  CK + P   ++  K+ +VL  K++    EE+A    VR +P  IF+K G+++D F+ AN   ++E I
Sbjct:   21 KLVVADFTATWCGPCKMIAPIFEEMAGKYEDVLFLKVDIDEAEEVANCHNVRSVPTFIFFKNGQKVDDFSGANKEKLQEFI 101
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: A0A091GGN8_9AVES (Thioredoxin (Fragment) n=2 Tax=Cuculus canorus TaxID=55661 RepID=A0A091GGN8_9AVES)

HSP 1 Score: 59.7 bits (143), Expect = 5.610e-9
Identity = 28/82 (34.15%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:  178 KLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 423
            KL++V+  A WC  CK ++P    L  K+ EV+  +I+    +++A    V+ +P   FYK GK++  F+ AN   +EE I+
Sbjct:   12 KLVVVDFSATWCGPCKMIKPFFYSLCEKYGEVVFIEIDVDDAQDVATHCDVKCMPTFQFYKSGKKVQEFSGANKEKLEETIK 93
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: A0A851Y5V6_EOLRO (THIO protein (Fragment) n=1 Tax=Eolophus roseicapilla TaxID=176039 RepID=A0A851Y5V6_EOLRO)

HSP 1 Score: 59.7 bits (143), Expect = 7.620e-9
Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  163 LRIPHKLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 423
            L    KL++V+  A WC  CK ++P    L  K+ +V+  +I+    +++A    V+ +P   FYK GK++  F+ AN   +EE I+
Sbjct:   20 LSAGQKLIVVDFSATWCGPCKMIKPFFHSLCEKYGDVVFIEIDVDDAQDVAAHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 106
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BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Match: UPI001FAC86D3 (thioredoxin n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAC86D3)

HSP 1 Score: 59.3 bits (142), Expect = 1.020e-8
Identity = 26/85 (30.59%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  178 KLLMVEIHAGWCRVCKGLQPKLLKLI--SKHPEVLCCKINKTSNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRD 426
            KL++V+  A WC  CK + P  ++L   S++ EV+  K++    ++++   G++ +P   FYK GK +  F+ AN+ T+E  +++
Sbjct:   21 KLVVVDFTATWCGPCKQIGPHFVRLSEQSENKEVIFLKVDVDDADDVSSNCGIKCMPTFHFYKNGKMVFEFSGANLETLENKLKE 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig658.15981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6A7_ECTSI8.000e-8382.64Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835Z3K6_9STRA2.600e-5556.03Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7R9U8D8_9STRA1.030e-3645.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A061S1S4_9CHLO4.610e-1039.73Thioredoxin-like chloroplastic-like n=1 Tax=Tetras... [more]
A0A091VUE2_NIPNI2.760e-934.15Thioredoxin (Fragment) n=2 Tax=Nipponia nippon Tax... [more]
A0A093BLW0_CHAPE2.830e-932.93Thioredoxin (Fragment) n=2 Tax=Chaetura pelagica T... [more]
UPI001CF9EFDD4.940e-934.57thioredoxin-like n=1 Tax=Protopterus annectens Tax... [more]
A0A091GGN8_9AVES5.610e-934.15Thioredoxin (Fragment) n=2 Tax=Cuculus canorus Tax... [more]
A0A851Y5V6_EOLRO7.620e-932.18THIO protein (Fragment) n=1 Tax=Eolophus roseicapi... [more]
UPI001FAC86D31.020e-830.59thioredoxin n=1 Tax=Girardinichthys multiradiatus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig658contigM-pyrifera_M_contig658:6568..8277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.6
Seed ortholog evalue8.9e-64
Seed eggNOG ortholog2880.D7G6A7
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-disulfide reductase activity
EggNOG OGsKOG0908@1,KOG0908@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-10_001160.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons3
Model size435
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig658.15981.1prot_M-pyrifera_M_contig658.15981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig658 6568..8277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.3268595-CDS-M-pyrifera_M_contig658:6567..66961622816546.3268595-CDS-M-pyrifera_M_contig658:6567..6696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig658 6568..6696 -
1692278039.011891-CDS-M-pyrifera_M_contig658:6567..66961692278039.011891-CDS-M-pyrifera_M_contig658:6567..6696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig658 6568..6696 -
1622816546.337491-CDS-M-pyrifera_M_contig658:7349..75861622816546.337491-CDS-M-pyrifera_M_contig658:7349..7586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig658 7350..7586 -
1692278039.0249853-CDS-M-pyrifera_M_contig658:7349..75861692278039.0249853-CDS-M-pyrifera_M_contig658:7349..7586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig658 7350..7586 -
1622816546.3531175-CDS-M-pyrifera_M_contig658:8208..82771622816546.3531175-CDS-M-pyrifera_M_contig658:8208..8277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig658 8209..8277 -
1692278039.035239-CDS-M-pyrifera_M_contig658:8208..82771692278039.035239-CDS-M-pyrifera_M_contig658:8208..8277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig658 8209..8277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig658.15981.1

>prot_M-pyrifera_M_contig658.15981.1 ID=prot_M-pyrifera_M_contig658.15981.1|Name=mRNA_M-pyrifera_M_contig658.15981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
VTLYEEFSKYADRRAVAQDVIFEITSMDHFDDVVSRAAGADEASSDGYED
AQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLISKHPEVLCCKINKTS
NEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDNS*
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mRNA from alignment at M-pyrifera_M_contig658:6568..8277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig658.15981.1 ID=mRNA_M-pyrifera_M_contig658.15981.1|Name=mRNA_M-pyrifera_M_contig658.15981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at M-pyrifera_M_contig658:6568..8277- (Macrocystis pyrifera P11B4 male)
GTGACCCTCTACGAAGAATTTTCCAAGTACGCAGATAGAAGGGCCGTGGC
ACAGGATGTCATCTTTGAGGTGAGCCCCACATTCTCGTGTACAAGGTACC
AGGTATATATCATTAGTGTTGGTCTAAAACAATACCAGTTACCAACTGTA
CAAATTTATATATATATATCGGCTTCAACAAACTATTGCAGTAGCGTCGC
TTCCCCACTGCTGTAATACGTACGGCGAAAGTAACAGGTTGGCAACCAGA
TAAACAAACGTATGTCAGTAGGTGGACTTCCGGCGGAGGGATGATTATAT
ATCTGCACCTTGTGGGTGGGAGCAGGGTGCCAGATGGGAAGGATCCACTG
CGGGGTTAAAGTACTGTAGTAGTTATAGTTTACCGAATCATCGGCACGCC
TCTTGTATCTGCCCCCGGGAGGGAATGGAATTTTTCCGTGGCAACAGCGT
ATATTCGGCGTTTTGTGAAGGGACCTGTAACCATCGTTCGTTCAGAGCTG
TGCGCCACCAACGAGCGCCAAGTGCATGCGTTCGCCAATTGTCAAGCAGC
GACATGCCCATGAGAACATGTGCAGTTTCGAGCGTCGAGGGATGCGAGAA
AGCCAAAAGTCCAATGGGCATGATGAGGCAATCGGCAAATTTCACAAAAC
CTGCTGGATGACCCTTAACTTAAACCCTCCCTCCTCCCCAGATTACGTCA
ATGGACCACTTTGACGACGTGGTGTCTCGGGCAGCAGGGGCTGACGAAGC
TTCCTCCGACGGGTACGAGGACGCGCAAGGAAACTTGAGAATTCCGCATA
AGCTTTTGATGGTCGAGATACATGCGGGATGGTGTCGCGTGTGCAAAGGA
TTGCAACCCAAGCTTTTGAAGCTTATATCGAAGCATCCGGAGGTCCTCTG
CTGCAAGATTAACAAGACGAGCAACGAGGTGAATGTCTGGTAATTTCGAC
ACCGGTCAAAAAATGTTTTTGGTGCATGAATGCCCTTAGCGCAGGTGCAT
GGCAGTAGATGTATAACACCAAAGTCGGAGATGTATGTCTCTAGACGGGA
AATGACCCAGGTCACGGGAAACAGCAGCGGAGAACTTGTGCTTTGCACGT
TTGGTCCCACACTGTCGACTTTCTGTGCTCGACTTGACAAGATACAAGAA
AGGCGTTCATCAATTCTCACCTGCACGTAATTTACTCTCATATCGAAAAC
ATGCGTTATTCCTTCTGCGTACGTGGTGAGGCATACTTCTTTCCACCGAT
AACTATGATCCGCGAATCCCAATGCGTCTCCCGCCCAGCAGACAGGAAAT
GCTCTGGTTTGTGCGGTCGCCTCTCTTGCCGAACACTCGCGCTAGAGCTC
TAGACGGTACGGGGCATTTGGCCACAACTATGAAAAATGCACGAACCATA
AACGAAAATACGCTTGTATATTCACTAGCCACCACTGTGAAACACGTACG
AACCATAAACGAAGATACGGTTGCAATTCACTCCAGCTCCTGTAAACAAT
ATCATTATTGTTGCCTATAATATCGTACCCGACGAGAATCTCGCTGCTCT
CTCGCCATTTGCCGTGGCTATAATTTCGCAGGAGCTGGCCGGAAAGCTGG
GGGTTCGCGGGCTGCCCATGATCATTTTCTACAAGAAGGGAAAGCGAATC
GATCACTTCACTACAGCCAACATCAACACAATAGAGGAAGGAATCAGAGA
TAATTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig658:6568..8277-

>mRNA_M-pyrifera_M_contig658.15981.1 ID=mRNA_M-pyrifera_M_contig658.15981.1|Name=mRNA_M-pyrifera_M_contig658.15981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig658:6568..8277- (Macrocystis pyrifera P11B4 male)
GTGACCCTCTACGAAGAATTTTCCAAGTACGCAGATAGAAGGGCCGTGGC
ACAGGATGTCATCTTTGAGGTGACCCTCTACGAAGAATTTTCCAAGTACG
CAGATAGAAGGGCCGTGGCACAGGATGTCATCTTTGAGATTACGTCAATG
GACCACTTTGACGACGTGGTGTCTCGGGCAGCAGGGGCTGACGAAGCTTC
CTCCGACGGGTACGAGGACGCGCAAGGAAACTTGAGAATTCCGCATAAGC
TTTTGATGGTCGAGATACATGCGGGATGGTGTCGCGTGTGCAAAGGATTG
CAACCCAAGCTTTTGAAGCTTATATCGAAGCATCCGGAGGTCCTCTGCTG
CAAGATTAACAAGACGAGCAACGAGATTACGTCAATGGACCACTTTGACG
ACGTGGTGTCTCGGGCAGCAGGGGCTGACGAAGCTTCCTCCGACGGGTAC
GAGGACGCGCAAGGAAACTTGAGAATTCCGCATAAGCTTTTGATGGTCGA
GATACATGCGGGATGGTGTCGCGTGTGCAAAGGATTGCAACCCAAGCTTT
TGAAGCTTATATCGAAGCATCCGGAGGTCCTCTGCTGCAAGATTAACAAG
ACGAGCAACGAGGAGCTGGCCGGAAAGCTGGGGGTTCGCGGGCTGCCCAT
GATCATTTTCTACAAGAAGGGAAAGCGAATCGATCACTTCACTACAGCCA
ACATCAACACAATAGAGGAAGGAATCAGAGATAATTCCTGAGAGCTGGCC
GGAAAGCTGGGGGTTCGCGGGCTGCCCATGATCATTTTCTACAAGAAGGG
AAAGCGAATCGATCACTTCACTACAGCCAACATCAACACAATAGAGGAAG
GAATCAGAGATAATTCCTGA
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