mRNA_M-pyrifera_M_contig65760.15973.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65760.15973.1
Unique NamemRNA_M-pyrifera_M_contig65760.15973.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A0A836BMG7_9CHLO (RRM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BMG7_9CHLO)

HSP 1 Score: 146 bits (368), Expect = 6.950e-42
Identity = 77/131 (58.78%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   25 AAREALSKFSGPSGIVLGGPTKESAGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARRR 417
            A R+  S+ +GPSG    G  +  A VLY+GH+PHGFYE +MLG+FSQFG V RVR+SRS +T ++RGY FVEF   EVA + AE M GYFL K+ L VKLL PA+VHP +F GA+RKFK IPW  V R R
Sbjct:    6 AKRKEESEDAGPSGREQDGNAQ--ARVLYLGHLPHGFYEKEMLGYFSQFGKVTRVRLSRSKRTGKARGYAFVEFMHPEVASVAAEAMDGYFLFKQRLSVKLLPPAKVHPLLFNGANRKFKVIPWRKVERGR 134          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A0A5A8DFN2_CAFRO (RRM domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DFN2_CAFRO)

HSP 1 Score: 146 bits (368), Expect = 6.650e-40
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   79 GPTKESAGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARRR 417
            GPT  +AGV+YVGH+PHGFYE+ + GFF+QFG V RVRV+RS KTAR++GY FVEF + EVARIVAETM+ Y+L  K L  K +  A  HP +F GAHR+FK + W   AR+R
Sbjct:   52 GPTPTTAGVVYVGHLPHGFYEEAIRGFFAQFGRVTRVRVARSKKTARAKGYAFVEFSNSEVARIVAETMNRYYLGGKYLVAKFIAGADAHPLLFVGAHRRFKAVDWRQAARKR 164          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: D8TQJ3_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQJ3_VOLCA)

HSP 1 Score: 140 bits (353), Expect = 1.220e-39
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = 1
Query:   97 AGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARRR 417
            A V+YVGH+PHGF+E QMLG+FSQFG V R+R+SRS KT  ++GY F+EF+  EVAR+ AE M GYFL K+ L+ KL+ P++VHP++F GA+R+FK IPW  V R+R
Sbjct:   27 ARVVYVGHVPHGFFEKQMLGYFSQFGKVTRLRLSRSKKTGNAKGYAFLEFQYPEVARVAAEAMDGYFLFKQRLKCKLIPPSRVHPQLFQGANRRFKVIPWRRVERQR 133          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A8J450_CHLRE (Predicted protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8J450_CHLRE)

HSP 1 Score: 139 bits (351), Expect = 2.190e-39
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1
Query:   97 AGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARRR 417
            A V+YVGHIPHGF+E QMLG+FSQFG V RVR+SRS +T  S+GY F+EF+  EVAR+ AE M GYF+ K+ L  KL+ PA+VHP +F GA+RKFK IP  +V R+R
Sbjct:   23 ARVIYVGHIPHGFFEKQMLGYFSQFGKVTRVRLSRSKRTGNSKGYAFIEFQHPEVARVAAEAMDGYFIFKQRLSCKLMPPARVHPMLFNGANRKFKVIPRRTVERKR 129          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A0A7S1CLL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLL1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.320e-39
Identity = 64/116 (55.17%), Postives = 89/116 (76.72%), Query Frame = 1
Query:   76 GGPTKESAGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEF--EDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARRR 417
            GG  ++  GV+Y+GHIPHGFYEDQM GFFSQFG V+R+R+SRS +T RSR Y F++F  E+ + A++VA+TMHGY L    L  +++ P ++HPR F GA+RKF+ +PW S+AR+R
Sbjct:   59 GGSDQDDGGVVYLGHIPHGFYEDQMRGFFSQFGRVSRLRLSRSKRTGRSRHYAFLQFGKEEGDCAQVVAQTMHGYILMGHSLVCRVVPPERLHPRTFRGANRKFRAVPWRSIARQR 174          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A0A6I9S6U9_ELAGV (MKI67 FHA domain-interacting nucleolar phosphoprotein n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9S6U9_ELAGV)

HSP 1 Score: 139 bits (349), Expect = 1.250e-38
Identity = 59/111 (53.15%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   82 PTKESAGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARR 414
            P KE+A VLY+GHIPHGFYE+QM GFF QFG + R+R+SR+ KT +S+ YGF+EFE+ EVA++VA+ M+ Y L +  LQ+ L+ P +VHP+++ G +R+FK + W ++AR+
Sbjct:   49 PVKETATVLYIGHIPHGFYEEQMQGFFQQFGKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVHPKLWKGVNRRFKPVDWKAIARK 159          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: Q8SAB6_ELAOL (RNA binding protein n=2 Tax=Arecaceae TaxID=4710 RepID=Q8SAB6_ELAOL)

HSP 1 Score: 138 bits (347), Expect = 2.510e-38
Identity = 59/111 (53.15%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   82 PTKESAGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARR 414
            P KE+A VLY+GHIPHGFYE+QM GFF QFG + R+R+SR+ KT +S+ YGF+EFE+ EVA++VA+ M+ Y L +  LQ+ L+ P +VHP++  G +R+FK + W ++AR+
Sbjct:   49 PVKETATVLYIGHIPHGFYEEQMQGFFQQFGKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVHPKLVKGVNRRFKPVDWKAIARK 159          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A0A1X6PG87_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PG87_PORUM)

HSP 1 Score: 139 bits (349), Expect = 4.690e-38
Identity = 61/106 (57.55%), Postives = 85/106 (80.19%), Query Frame = 1
Query:  100 GVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARRR 417
            GV+Y+GH+PHGFYE+Q+ GFFSQFGTV RV+V+RS K+AR++GY FV+F + EVARI AETMHGY +  ++L V L+ P + H R++ GA RK+ +IPW ++ R+R
Sbjct:  113 GVVYIGHLPHGFYEEQLRGFFSQFGTVQRVKVARSKKSARAKGYAFVQFANVEVARIAAETMHGYLMFGRLLDVHLVPPERQHARLWVGAERKWDRIPWRAIERQR 218          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A0A383WD88_TETOB (RRM domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WD88_TETOB)

HSP 1 Score: 136 bits (343), Expect = 5.160e-38
Identity = 58/101 (57.43%), Postives = 82/101 (81.19%), Query Frame = 1
Query:  103 VLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSV 405
            V+Y+GH+PHGFYED++LGFFSQFG + RVR+SRS KTA+ + Y F+EF+  +VA+I AETM GYF+ K+ L  ++L  ++VHP++F GA+RKFKK+PW  +
Sbjct:   36 VVYIGHLPHGFYEDELLGFFSQFGKLVRVRLSRSKKTAKPKHYAFLEFQHADVAQIAAETMDGYFMFKQKLSCRVLKQSEVHPQLFKGANRKFKKVPWKKI 136          
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Match: A0A7S3BEE2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BEE2_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 8.640e-38
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1
Query:   82 PTKESAGVLYVGHIPHGFYEDQMLGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFLEKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARR 414
            PT E AGVLY+GHIPHGFYEDQM GFFSQFGTV+R+R++R+ KT RS+ Y ++EF  REVA+IVA++M+GY +  KVL  KLL   +VHP  F  AHR+FK I   ++ R+
Sbjct:   88 PTPEDAGVLYLGHIPHGFYEDQMRGFFSQFGTVSRLRLARNKKTGRSKHYAYIEFRHREVAQIVAKSMNGYLMFSKVLVCKLLSKEEVHPETFKNAHRRFKIIDRATMVRK 198          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65760.15973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836BMG7_9CHLO6.950e-4258.78RRM domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A5A8DFN2_CAFRO6.650e-4060.18RRM domain-containing protein n=2 Tax=Sar TaxID=26... [more]
D8TQJ3_VOLCA1.220e-3959.81RRM domain-containing protein n=1 Tax=Volvox carte... [more]
A8J450_CHLRE2.190e-3961.68Predicted protein n=2 Tax=Chlamydomonas TaxID=3052... [more]
A0A7S1CLL1_9STRA6.320e-3955.17Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6I9S6U9_ELAGV1.250e-3853.15MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
Q8SAB6_ELAOL2.510e-3853.15RNA binding protein n=2 Tax=Arecaceae TaxID=4710 R... [more]
A0A1X6PG87_PORUM4.690e-3857.55RRM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A383WD88_TETOB5.160e-3857.43RRM domain-containing protein n=2 Tax=Scenedesmace... [more]
A0A7S3BEE2_9EUKA8.640e-3859.46Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65760contigM-pyrifera_M_contig65760:835..1251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score140.6
Seed ortholog evalue5.6e-31
Seed eggNOG ortholog3067.XP_002948783.1
KEGG koko:K14838
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA recognition motif
EggNOG OGs34M16@3041,37RHZ@33090,KOG4208@1,KOG4208@2759
COG Functional cat.A
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.786858-CDS-M-pyrifera_M_contig65760:834..12511622816545.786858-CDS-M-pyrifera_M_contig65760:834..1251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65760 835..1251 +
1692278038.7042186-CDS-M-pyrifera_M_contig65760:834..12511692278038.7042186-CDS-M-pyrifera_M_contig65760:834..1251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65760 835..1251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65760.15973.1prot_M-pyrifera_M_contig65760.15973.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65760 835..1251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65760.15973.1

>prot_M-pyrifera_M_contig65760.15973.1 ID=prot_M-pyrifera_M_contig65760.15973.1|Name=mRNA_M-pyrifera_M_contig65760.15973.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
SARAAWLPAAREALSKFSGPSGIVLGGPTKESAGVLYVGHIPHGFYEDQM
LGFFSQFGTVNRVRVSRSPKTARSRGYGFVEFEDREVARIVAETMHGYFL
EKKVLQVKLLDPAQVHPRMFAGAHRKFKKIPWVSVARRR
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mRNA from alignment at M-pyrifera_M_contig65760:835..1251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65760.15973.1 ID=mRNA_M-pyrifera_M_contig65760.15973.1|Name=mRNA_M-pyrifera_M_contig65760.15973.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig65760:835..1251+ (Macrocystis pyrifera P11B4 male)
TCGGCGCGAGCCGCTTGGTTGCCGGCTGCCCGTGAGGCGCTGTCCAAGTT TTCTGGTCCCAGCGGGATCGTGCTGGGCGGGCCCACGAAGGAGTCGGCGG GGGTGCTGTACGTGGGCCACATTCCCCACGGGTTTTACGAAGACCAGATG CTTGGCTTCTTTTCCCAGTTCGGCACTGTGAACCGCGTGCGCGTCTCTCG GTCCCCAAAGACTGCGCGGAGCCGCGGCTACGGCTTTGTGGAGTTCGAGG ACCGCGAGGTGGCGCGCATCGTCGCAGAAACCATGCACGGCTATTTCCTC GAGAAAAAAGTGCTGCAGGTGAAACTGCTCGACCCCGCACAAGTGCACCC TCGCATGTTCGCGGGAGCGCACCGGAAATTCAAGAAAATCCCGTGGGTCT CCGTCGCAAGACGCAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65760:835..1251+

>mRNA_M-pyrifera_M_contig65760.15973.1 ID=mRNA_M-pyrifera_M_contig65760.15973.1|Name=mRNA_M-pyrifera_M_contig65760.15973.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig65760:835..1251+ (Macrocystis pyrifera P11B4 male)
TCGGCGCGAGCCGCTTGGTTGCCGGCTGCCCGTGAGGCGCTGTCCAAGTT
TTCTGGTCCCAGCGGGATCGTGCTGGGCGGGCCCACGAAGGAGTCGGCGG
GGGTGCTGTACGTGGGCCACATTCCCCACGGGTTTTACGAAGACCAGATG
CTTGGCTTCTTTTCCCAGTTCGGCACTGTGAACCGCGTGCGCGTCTCTCG
GTCCCCAAAGACTGCGCGGAGCCGCGGCTACGGCTTTGTGGAGTTCGAGG
ACCGCGAGGTGGCGCGCATCGTCGCAGAAACCATGCACGGCTATTTCCTC
GAGAAAAAAGTGCTGCAGGTGAAACTGCTCGACCCCGCACAAGTGCACCC
TCGCATGTTCGCGGGAGCGCACCGGAAATTCAAGAAAATCCCGTGGGTCT
CCGTCGCAAGACGCAGATCGGCGCGAGCCGCTTGGTTGCCGGCTGCCCGT
GAGGCGCTGTCCAAGTTTTCTGGTCCCAGCGGGATCGTGCTGGGCGGGCC
CACGAAGGAGTCGGCGGGGGTGCTGTACGTGGGCCACATTCCCCACGGGT
TTTACGAAGACCAGATGCTTGGCTTCTTTTCCCAGTTCGGCACTGTGAAC
CGCGTGCGCGTCTCTCGGTCCCCAAAGACTGCGCGGAGCCGCGGCTACGG
CTTTGTGGAGTTCGAGGACCGCGAGGTGGCGCGCATCGTCGCAGAAACCA
TGCACGGCTATTTCCTCGAGAAAAAAGTGCTGCAGGTGAAACTGCTCGAC
CCCGCACAAGTGCACCCTCGCATGTTCGCGGGAGCGCACCGGAAATTCAA
GAAAATCCCGTGGGTCTCCGTCGCAAGACGCAGA
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