mRNA_M-pyrifera_M_contig65739.15965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65739.15965.1
Unique NamemRNA_M-pyrifera_M_contig65739.15965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.380e-22
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 QFRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            Q RQEDAHEFLRHLLDKMVDC LKR+GVKSSAP+RLAETTPIN IFGGYLRS++
Sbjct:  366 QGRQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRL 419          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.850e-17
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            RQEDAHEFLRHL+DKM    L+RRGV   APNRLAETTPI+ +FGGYLRSQ+
Sbjct:  237 RQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQL 288          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.310e-15
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            RQEDAHEFLR L+D M +  L+R GVK++AP+RL ETT IN +FGGYLR+QV
Sbjct:   98 RQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQV 149          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.760e-15
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            RQEDAHEFLRHLLD + + CL+   VKS+AP RLAETT ++ IFGGYLRSQV
Sbjct:  251 RQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 75.5 bits (184), Expect = 1.320e-14
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            RQEDAHEFLRHLLD +   CL+   VKS+AP RLAETT ++ IFGGYLRSQV
Sbjct:  251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-14
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            RQEDAHEFLRHLLD +   CL+   VKS+AP RLAETT ++ IFGGYLRSQV
Sbjct:  251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A6H5JKG0_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.640e-14
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    4 FRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            + QEDAHE LRHL+DKM    L+RRGV   A NRL ETTPI+ +FGGYLRSQ+
Sbjct:  297 YGQEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQL 349          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A7R9YFU1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.790e-11
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 QFRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            Q RQEDAHEFLRHLLD +   CL R G+K +   R  ET+ I  IFGGYLRSQ+
Sbjct:  128 QGRQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQL 181          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A7S1CK59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK59_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.270e-10
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
            RQEDAHEFLR LLD +    L+   +K +A  RLAETT ++ +FGGYLRSQV
Sbjct:   99 RQEDAHEFLRCLLDGLHKNELRHHRLKETAAGRLAETTAVHRVFGGYLRSQV 150          
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A7S3XUI1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUI1_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 7.710e-10
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSA--PN--RLAETTPINIIFGGYLRSQV 162
            RQEDA EFL HLLD MV   L+R  VK +A  PN  R++ETT I+ IFGGYLR+QV
Sbjct:   16 RQEDAQEFLCHLLDAMVKTELRRARVKENATGPNGERISETTAIHRIFGGYLRNQV 71          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJN5_9PHAE1.380e-2287.04USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LD98_ECTSI4.850e-1775.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A835YLY7_9STRA4.310e-1567.31USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A4D9CS17_9STRA9.760e-1571.15Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
K8ZBR0_NANGC1.320e-1471.15Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
W7TEV7_9STRA1.330e-1471.15Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=N... [more]
A0A6H5JKG0_9PHAE4.640e-1466.04Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A7R9YFU1_9STRA5.790e-1161.11Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A7S1CK59_9STRA4.270e-1059.62Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3XUI1_HETAK7.710e-1062.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65739contigM-pyrifera_M_contig65739:953..1114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue8.6e-20
Seed eggNOG ortholog2880.D8LD97
KEGG koko:K11855
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.4008162-CDS-M-pyrifera_M_contig65739:952..11141622816545.4008162-CDS-M-pyrifera_M_contig65739:952..1114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65739 953..1114 -
1692278038.4795601-CDS-M-pyrifera_M_contig65739:952..11141692278038.4795601-CDS-M-pyrifera_M_contig65739:952..1114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65739 953..1114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65739.15965.1prot_M-pyrifera_M_contig65739.15965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65739 953..1114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65739.15965.1

>prot_M-pyrifera_M_contig65739.15965.1 ID=prot_M-pyrifera_M_contig65739.15965.1|Name=mRNA_M-pyrifera_M_contig65739.15965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
QFRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYL
RSQV
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mRNA from alignment at M-pyrifera_M_contig65739:953..1114-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65739.15965.1 ID=mRNA_M-pyrifera_M_contig65739.15965.1|Name=mRNA_M-pyrifera_M_contig65739.15965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig65739:953..1114- (Macrocystis pyrifera P11B4 male)
CAATTTCGGCAGGAGGACGCGCACGAGTTCTTGCGCCACCTGCTGGACAA GATGGTTGACTGCTGCCTCAAGCGCCGCGGGGTCAAGTCCTCCGCGCCCA ACCGCCTGGCGGAGACGACTCCCATCAACATAATATTCGGGGGCTATTTG CGCAGCCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65739:953..1114-

>mRNA_M-pyrifera_M_contig65739.15965.1 ID=mRNA_M-pyrifera_M_contig65739.15965.1|Name=mRNA_M-pyrifera_M_contig65739.15965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig65739:953..1114- (Macrocystis pyrifera P11B4 male)
CAATTTCGGCAGGAGGACGCGCACGAGTTCTTGCGCCACCTGCTGGACAA
GATGGTTGACTGCTGCCTCAAGCGCCGCGGGGTCAAGTCCTCCGCGCCCA
ACCGCCTGGCGGAGACGACTCCCATCAACATAATATTCGGGGGCTATTTG
CGCAGCCAGGTGCAATTTCGGCAGGAGGACGCGCACGAGTTCTTGCGCCA
CCTGCTGGACAAGATGGTTGACTGCTGCCTCAAGCGCCGCGGGGTCAAGT
CCTCCGCGCCCAACCGCCTGGCGGAGACGACTCCCATCAACATAATATTC
GGGGGCTATTTGCGCAGCCAGGTG
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