mRNA_M-pyrifera_M_contig65739.15965.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.380e-22 Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query: 1 QFRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
Q RQEDAHEFLRHLLDKMVDC LKR+GVKSSAP+RLAETTPIN IFGGYLRS++
Sbjct: 366 QGRQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRL 419
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 4.850e-17 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
Query: 7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
RQEDAHEFLRHL+DKM L+RRGV APNRLAETTPI+ +FGGYLRSQ+
Sbjct: 237 RQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQL 288
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 4.310e-15 Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
RQEDAHEFLR L+D M + L+R GVK++AP+RL ETT IN +FGGYLR+QV
Sbjct: 98 RQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQV 149
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 9.760e-15 Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
RQEDAHEFLRHLLD + + CL+ VKS+AP RLAETT ++ IFGGYLRSQV
Sbjct: 251 RQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC) HSP 1 Score: 75.5 bits (184), Expect = 1.320e-14 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
RQEDAHEFLRHLLD + CL+ VKS+AP RLAETT ++ IFGGYLRSQV
Sbjct: 251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.330e-14 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
RQEDAHEFLRHLLD + CL+ VKS+AP RLAETT ++ IFGGYLRSQV
Sbjct: 251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A6H5JKG0_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 4.640e-14 Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 4 FRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
+ QEDAHE LRHL+DKM L+RRGV A NRL ETTPI+ +FGGYLRSQ+
Sbjct: 297 YGQEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQL 349
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A7R9YFU1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 5.790e-11 Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 QFRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
Q RQEDAHEFLRHLLD + CL R G+K + R ET+ I IFGGYLRSQ+
Sbjct: 128 QGRQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQL 181
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A7S1CK59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK59_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 4.270e-10 Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLRSQV 162
RQEDAHEFLR LLD + L+ +K +A RLAETT ++ +FGGYLRSQV
Sbjct: 99 RQEDAHEFLRCLLDGLHKNELRHHRLKETAAGRLAETTAVHRVFGGYLRSQV 150
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Match: A0A7S3XUI1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUI1_HETAK) HSP 1 Score: 60.1 bits (144), Expect = 7.710e-10 Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 7 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSA--PN--RLAETTPINIIFGGYLRSQV 162
RQEDA EFL HLLD MV L+R VK +A PN R++ETT I+ IFGGYLR+QV
Sbjct: 16 RQEDAQEFLCHLLDAMVKTELRRARVKENATGPNGERISETTAIHRIFGGYLRNQV 71 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65739.15965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig65739.15965.1 >prot_M-pyrifera_M_contig65739.15965.1 ID=prot_M-pyrifera_M_contig65739.15965.1|Name=mRNA_M-pyrifera_M_contig65739.15965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp QFRQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTPINIIFGGYLback to top mRNA from alignment at M-pyrifera_M_contig65739:953..1114- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig65739.15965.1 ID=mRNA_M-pyrifera_M_contig65739.15965.1|Name=mRNA_M-pyrifera_M_contig65739.15965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig65739:953..1114- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig65739:953..1114- >mRNA_M-pyrifera_M_contig65739.15965.1 ID=mRNA_M-pyrifera_M_contig65739.15965.1|Name=mRNA_M-pyrifera_M_contig65739.15965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig65739:953..1114- (Macrocystis pyrifera P11B4 male)back to top |