mRNA_M-pyrifera_M_contig65699.15961.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65699.15961.1
Unique NamemRNA_M-pyrifera_M_contig65699.15961.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A5A8ECB8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECB8_CAFRO)

HSP 1 Score: 155 bits (393), Expect = 1.170e-41
Identity = 80/149 (53.69%), Postives = 98/149 (65.77%), Query Frame = 1
Query:   13 TGPMNNTDRPGGDYRDYGLPASAGAAKNIANCSAQCALESQCVAWTYVREGGP------IPRCSLKSSIPKTNYNQWCVSGTPASLQLVKDTTSAGGDGDHNVEAQRIPLKVSEDNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYP 441
            +GP+NNTD PGGDYRD+ LPASA A +NI NCS  C  E QCVAWTYVR+GGP      +PRCSLKSS P  + N+WCVSGT  SL  V D + AGGDG H+V A+ +P+      + L+V    +VDHS++E FA  G      R YP
Sbjct:  440 SGPLNNTDMPGGDYRDFALPASAPAEQNIQNCSQTCLAEPQCVAWTYVRDGGPAATAFPVPRCSLKSSAPPADANKWCVSGTVPSLVQVNDQSRAGGDGAHSVVAESLPIAKGASVSELSV----WVDHSVIESFANRGLGRIVTRSYP 584          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A812NRC5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NRC5_9DINO)

HSP 1 Score: 155 bits (393), Expect = 1.780e-41
Identity = 80/149 (53.69%), Postives = 98/149 (65.77%), Query Frame = 1
Query:   13 TGPMNNTDRPGGDYRDYGLPASAGAAKNIANCSAQCALESQCVAWTYVREGGP------IPRCSLKSSIPKTNYNQWCVSGTPASLQLVKDTTSAGGDGDHNVEAQRIPLKVSEDNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYP 441
            +GP+NNTD PGGDYRD+ LPASA A +NI NCS  C  E QCVAWTYVR+GGP      +PRCSLKSS P  + N+WCVSGT  SL  V D + AGGDG H+V A+ +P+      + L+V    +VDHS++E FA  G      R YP
Sbjct:  493 SGPLNNTDMPGGDYRDFALPASAPAEQNIQNCSQTCLAEPQCVAWTYVRDGGPAATAFPVPRCSLKSSAPPADTNKWCVSGTVPSLVQVNDQSRAGGDGAHSVVAESLPIAKGASVSELSV----WVDHSVIESFANRGLGRIVTRSYP 637          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A0S4J9J2_BODSA (Beta-fructofuranosidase-like protein, putative (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J9J2_BODSA)

HSP 1 Score: 106 bits (265), Expect = 3.370e-24
Identity = 67/165 (40.61%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    1 SMPETGPM-NNTDRPGGDYRDYGLPASAGAAKNIANCSAQCALESQCVAWTYVREGGPIP--------RCSLKSSIPKT--NYNQWCVSGTPASLQLVKDTTSAGGDGDHNVEAQRIPLKVSE-DNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYPPDQNTA 459
            +MP  G + NNTD+PGGDY+D+ LP +   A +I NCSA C  + +CVAWTYVR G P P        RCSLK ++P         CVSG P S  +  +  S+G  G       R  +     D+T   + LH FVDHS++E F   G    + RVY P  +TA
Sbjct:  260 NMPNGGALWNNTDQPGGDYKDFPLPGTDAGA-DILNCSASCEADRRCVAWTYVRAGFPAPSPPFNYAPRCSLKGTLPSALNPAAPCCVSGRPQSAWISLNRESSGTTGSTAPWQGRASILPDPFDSTEGRIKLHVFVDHSVIEAFMDDGLERVSGRVYVPTASTA 423          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A836GEU7_9TRYP (Uncharacterized protein n=4 Tax=Mundinia TaxID=2249475 RepID=A0A836GEU7_9TRYP)

HSP 1 Score: 77.8 bits (190), Expect = 8.810e-14
Identity = 49/123 (39.84%), Postives = 61/123 (49.59%), Query Frame = 1
Query:   76 SAGAAKNIANCSAQCALESQCVAWTYVREGGPIPRCSLKSSIPKTNYNQWCVSGTPASLQLVKDTTSAGGDGDHNVEAQRIPLKVSEDNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYPP 444
            S G+  N++NCS +CA E  CV+WTY     P  RC+L     +  +N    SGT     L  D T +G  G       R P+K +  N    V LH FVD SIVEVF  GG    T R+Y P
Sbjct:  913 SGGSNINVSNCSVECAKERACVSWTYT--ASPTSRCALYWQASERVHNTSAQSGTVNIPLLYMDRTRSGSLGSSEPLLGRAPVKQTNPNV---VQLHIFVDDSIVEVFKDGGLETMTGRLYLP 1030          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A0N1I4P1_LEPSE (Beta-fructofuranosidase-like protein n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1I4P1_LEPSE)

HSP 1 Score: 73.6 bits (179), Expect = 1.470e-12
Identity = 45/116 (38.79%), Postives = 56/116 (48.28%), Query Frame = 1
Query:  100 ANCSAQCALESQCVAWTYVREGGPIPRCSLKSSIPKTNYNQWCVSGTPASLQLVKDTTSAGGDGDHNVEAQRIPLKVSEDNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYPPD 447
            ANCSA+C  E  C++WTY     P P C+L     +  +N    SGT    QL  D  ++G  G       R PLK         V LH +VD S+VEVF  GG    T R+Y PD
Sbjct:  161 ANCSAECTKERTCISWTYT--SSPSPTCALYWKTSERVHNSVAQSGTVNIPQLYMDRVASGSIGSIEPLMGRAPLKQKNAGV---VQLHIYVDDSVVEVFKDGGLETITGRLYLPD 271          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A0M9G9Y1_9TRYP (Beta-fructofuranosidase-like protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9G9Y1_9TRYP)

HSP 1 Score: 71.2 bits (173), Expect = 1.710e-11
Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 1
Query:  103 NCSAQCALESQCVAWTYVREGGPIPRCSLKSSIPKTNYNQWCVSGTPASLQLVKDTTSAGGDGDHNVEAQRIPLKVSEDNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYPPD 447
            NCS++CA +  CV+WTY     P P C+L         N    SGT    QL    T +G  G       R P+K +  N    V+LH +VD S+VEVF  GG    T R+Y PD
Sbjct: 1174 NCSSECAKQRTCVSWTYT--SSPSPTCALYWKTSGLVQNSTAQSGTVNIPQLYMSRTVSGSIGSTQPLMGRAPVKQANANE---VELHIYVDDSVVEVFKDGGLETMTGRLYLPD 1283          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: UPI001A93ECBB (PAN domain-containing protein n=1 Tax=Jiella sonneratiae TaxID=2816856 RepID=UPI001A93ECBB)

HSP 1 Score: 60.5 bits (145), Expect = 4.620e-8
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   34 DRPGGDYRDYGLPASAGAAKNIANCSAQCALESQ-CVAWTYVREG--GPIPRCSLKSSIPKTNYNQWCVSG 237
            DRPGGDY+++ LPA   A  N+  C + C  E+  C AWT+VR G  GP PRC LK+++P    N  C SG
Sbjct:  181 DRPGGDYKNFDLPA---ADANL--CGSACNGENALCRAWTFVRPGVQGPKPRCWLKNTVPPAAVNDCCTSG 246          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A836G5D5_9TRYP (Uncharacterized protein n=1 Tax=Leishmania martiniquensis TaxID=1580590 RepID=A0A836G5D5_9TRYP)

HSP 1 Score: 58.9 bits (141), Expect = 3.210e-7
Identity = 39/114 (34.21%), Postives = 52/114 (45.61%), Query Frame = 1
Query:  103 NCSAQCALESQCVAWTYVREGGPIPRCSLKSSIPKTNYNQWCVSGTPASLQLVKDTTSAGGDGDHNVEAQRIPLKVSEDNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYPP 444
            NCS  C  + +C++WTY     P   C+L     +  Y+ +  SGT     L  D T +G  G       R  +K +  N    V LH FVD S+VEVF   G    T R+Y P
Sbjct:  922 NCSVACLKDRRCLSWTYTTS--PSSVCALYWQTRERAYDTFAQSGTVNIPLLHMDRTRSGSLGSRQPLLGRASVKQANPNV---VQLHIFVDGSVVEVFKDSGLETMTGRLYLP 1030          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A3B9YVH5_9PROT (Beta/gamma crystallin 'Greek key' domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9YVH5_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 2.830e-5
Identity = 27/73 (36.99%), Postives = 39/73 (53.42%), Query Frame = 1
Query:   28 NTDRPGGDYRDYGLPASAGAAKNIANCSAQCALESQCVAWTYVREGGPIP---RCSLKSSIPKTNYNQWCVSG 237
            +TDRPGGDYR++ +P       +  +C + C  + +C AWTY+R     P   +C LK  +     N  CVSG
Sbjct:   68 DTDRPGGDYREFSVPFGG----DYRSCESACNSDGRCRAWTYLRSDTFPPTGGQCYLKDRVSPPTPNDCCVSG 136          
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Match: A0A3C0MDP2_9PROT (Beta/gamma crystallin 'Greek key' domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0MDP2_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 3.010e-5
Identity = 27/73 (36.99%), Postives = 39/73 (53.42%), Query Frame = 1
Query:   28 NTDRPGGDYRDYGLPASAGAAKNIANCSAQCALESQCVAWTYVREGGPIP---RCSLKSSIPKTNYNQWCVSG 237
            +TDRPGGDYR++ +P       +  +C + C  + +C AWTY+R     P   +C LK  +     N  CVSG
Sbjct:   29 DTDRPGGDYREFSVPFGG----DYRSCESACNSDGRCRAWTYLRSDTFPPTGGQCYLKDRVSPPTPNDCCVSG 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65699.15961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5A8ECB8_CAFRO1.170e-4153.69Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A812NRC5_9DINO1.780e-4153.69Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A0S4J9J2_BODSA3.370e-2440.61Beta-fructofuranosidase-like protein, putative (Fr... [more]
A0A836GEU7_9TRYP8.810e-1439.84Uncharacterized protein n=4 Tax=Mundinia TaxID=224... [more]
A0A0N1I4P1_LEPSE1.470e-1238.79Beta-fructofuranosidase-like protein n=1 Tax=Lepto... [more]
A0A0M9G9Y1_9TRYP1.710e-1138.26Beta-fructofuranosidase-like protein n=1 Tax=Lepto... [more]
UPI001A93ECBB4.620e-847.89PAN domain-containing protein n=1 Tax=Jiella sonne... [more]
A0A836G5D5_9TRYP3.210e-734.21Uncharacterized protein n=1 Tax=Leishmania martini... [more]
A0A3B9YVH5_9PROT2.830e-536.99Beta/gamma crystallin 'Greek key' domain-containin... [more]
A0A3C0MDP2_9PROT3.010e-536.99Beta/gamma crystallin 'Greek key' domain-containin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65699contigM-pyrifera_M_contig65699:525..1121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog1122970.AUHC01000002_gene1284
KEGG koko:K04775
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAN domain
EggNOG OGs1QRQ5@1224,2UK8C@28211,COG3591@1,COG3591@2
COG Functional cat.E
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons2
Model size459
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65699.15961.1prot_M-pyrifera_M_contig65699.15961.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65699 525..1118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.205558-CDS-M-pyrifera_M_contig65699:524..8111622816545.205558-CDS-M-pyrifera_M_contig65699:524..811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65699 525..811 -
1692278038.3654823-CDS-M-pyrifera_M_contig65699:524..8111692278038.3654823-CDS-M-pyrifera_M_contig65699:524..811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65699 525..811 -
1622816545.2180395-CDS-M-pyrifera_M_contig65699:949..11181622816545.2180395-CDS-M-pyrifera_M_contig65699:949..1118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65699 950..1118 -
1692278038.3760996-CDS-M-pyrifera_M_contig65699:949..11181692278038.3760996-CDS-M-pyrifera_M_contig65699:949..1118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65699 950..1118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.2301483-UTR-M-pyrifera_M_contig65699:1118..11211622816545.2301483-UTR-M-pyrifera_M_contig65699:1118..1121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65699 1119..1121 -
1692278038.3858745-UTR-M-pyrifera_M_contig65699:1118..11211692278038.3858745-UTR-M-pyrifera_M_contig65699:1118..1121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65699 1119..1121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65699.15961.1

>prot_M-pyrifera_M_contig65699.15961.1 ID=prot_M-pyrifera_M_contig65699.15961.1|Name=mRNA_M-pyrifera_M_contig65699.15961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MPETGPMNNTDRPGGDYRDYGLPASAGAAKNIANCSAQCALESQCVAWTY
VREGGPIPRCSLKSSIPKTNYNQWCVSGTPASLQLVKDTTSAGGDGDHNV
EAQRIPLKVSEDNTTLTVDLHAFVDHSIVEVFAFGGRAVGTARVYPPDQN
TA
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mRNA from alignment at M-pyrifera_M_contig65699:525..1121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65699.15961.1 ID=mRNA_M-pyrifera_M_contig65699.15961.1|Name=mRNA_M-pyrifera_M_contig65699.15961.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig65699:525..1121- (Macrocystis pyrifera P11B4 male)
TCCATGCCAGAAACCGGACCCATGAACAACACCGACCGTCCTGGAGGAGA CTACAGAGATTACGGCCTCCCTGCAAGCGCCGGTGCCGCCAAAAACATTG CAAACTGCTCCGCACAATGTGCACTTGAATCCCAATGCGTCGCATGGACG TACGTCCGAGAAGGAGGGCCAAGTGAAGAGGTCGTGAAGCAGGAGGAGGA GGAGGAGGAGGAGAAGGGGTTGGGCTCTTTGTCTTATTCTTCTCCTCTAT CATCCCCTCCTTCCTCCTCTCCTCCTCCTTCCTCCTCTTCTCCTCCCCGC TCCTATCCAGTTCCGCGCTGTTCGCTCAAGTCATCGATTCCAAAGACCAA CTACAACCAGTGGTGTGTCAGTGGAACTCCAGCCTCACTGCAGTTGGTGA AGGACACGACAAGCGCTGGCGGGGATGGTGACCATAATGTGGAAGCCCAG CGCATTCCGCTCAAAGTCAGCGAAGACAACACCACCCTCACCGTCGACCT CCATGCCTTTGTGGATCACTCCATCGTCGAAGTCTTTGCCTTCGGAGGAA GAGCTGTCGGAACAGCAAGAGTCTACCCTCCAGACCAAAACACAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65699:525..1121-

>mRNA_M-pyrifera_M_contig65699.15961.1 ID=mRNA_M-pyrifera_M_contig65699.15961.1|Name=mRNA_M-pyrifera_M_contig65699.15961.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig65699:525..1121- (Macrocystis pyrifera P11B4 male)
ATGCCAGAAACCGGACCCATGAACAACACCGACCGTCCTGGAGGAGACTA
CAGAGATTACGGCCTCCCTGCAAGCGCCGGTGCCGCCAAAAACATTGCAA
ACTGCTCCGCACAATGTGCACTTGAATCCCAATGCGTCGCATGGACGTAC
GTCCGAGAAGGAGGGCCAAATGCCAGAAACCGGACCCATGAACAACACCG
ACCGTCCTGGAGGAGACTACAGAGATTACGGCCTCCCTGCAAGCGCCGGT
GCCGCCAAAAACATTGCAAACTGCTCCGCACAATGTGCACTTGAATCCCA
ATGCGTCGCATGGACGTACGTCCGAGAAGGAGGGCCAATTCCGCGCTGTT
CGCTCAAGTCATCGATTCCAAAGACCAACTACAACCAGTGGTGTGTCAGT
GGAACTCCAGCCTCACTGCAGTTGGTGAAGGACACGACAAGCGCTGGCGG
GGATGGTGACCATAATGTGGAAGCCCAGCGCATTCCGCTCAAAGTCAGCG
AAGACAACACCACCCTCACCGTCGACCTCCATGCCTTTGTGGATCACTCC
ATCGTCGAAGTCTTTGCCTTCGGAGGAAGAGCTGTCGGAACAGCAAGAGT
CTACCCTCCAGACCAAAACACAGCATTCCGCGCTGTTCGCTCAAGTCATC
GATTCCAAAGACCAACTACAACCAGTGGTGTGTCAGTGGAACTCCAGCCT
CACTGCAGTTGGTGAAGGACACGACAAGCGCTGGCGGGGATGGTGACCAT
AATGTGGAAGCCCAGCGCATTCCGCTCAAAGTCAGCGAAGACAACACCAC
CCTCACCGTCGACCTCCATGCCTTTGTGGATCACTCCATCGTCGAAGTCT
TTGCCTTCGGAGGAAGAGCTGTCGGAACAGCAAGAGTCTACCCTCCAGAC
CAAAACACAGCA
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