mRNA_M-pyrifera_M_contig6568.15958.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6568.15958.1
Unique NamemRNA_M-pyrifera_M_contig6568.15958.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Match: D7FVB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB7_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.140e-35
Identity = 78/122 (63.93%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 LGSLRMTEGD--ALKAAQATAKKLNDQAAALREAAASSEADIRPPAEEVEVDESATTAETAPEVRPEDLPPKQKISDDMKARLRKELTSQGADPNKSAGNPILIVAAVIAVLVVVGGQGIFY 360
            +G+LRM +GD  A+ AA+ TAK+L +QAAALRE+AA SEA+IRP +++ +      T    P VRPED+PPKQKIS+DM+ RLR+EL SQGADPN+SAGNPIL+VA +IAVLV+VGGQGIFY
Sbjct:   25 VGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPASDKAD----EVTETPVPAVRPEDMPPKQKISNDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 142
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BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Match: A0A836CMY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.890e-17
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   49 ATAKKLNDQAAALREAAASSEADIRPPAEEVEVDESATTAETAPEVRPEDLPPKQKISDDMKARLRKELTSQGADPNKSAGNPILIVAAVIAVLVVVGGQGIFY 360
            A A++L+DQAA LRE  A+ E D   PA + E  ++   AE     + ++L      S+ MKA+LRKEL SQGADPN+S+GN ILIVAAVI VLVV+GGQGIFY
Sbjct:   57 AEAQRLSDQAAKLREEIAAMEGDRPKPAPKAEPVQAKADAEEEAGFKEKEL------SEAMKAKLRKELISQGADPNRSSGNGILIVAAVIGVLVVLGGQGIFY 154
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BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Match: A0A7S2V2G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.010e-12
Identity = 38/64 (59.38%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  169 ETAPEVRPEDLPPKQKISDDMKARLRKELTSQGADPNKSAGNPILIVAAVIAVLVVVGGQGIFY 360
            E  P V+ ++  P + +S++MK +LR+EL SQGADPN+++GNPILIV A+IAVLV+ GGQGIFY
Sbjct:   88 EVVPLVKNQEYKPTE-MSENMKNKLRRELISQGADPNRASGNPILIVGAIIAVLVIAGGQGIFY 150
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BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Match: A0A7S4D594_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D594_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 5.450e-11
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:   55 AKKLNDQAAALREAAASSEADIRPPAEEVEVDESATTAETAPEVRPEDLPPKQKISDDMKARLRKELTSQGADPNKSAGNPILIVAAVIAVLVVVGGQGIFY 360
            AKKL +QAAALR     +EAD     ++  +  +            E+LP + +IS  MK +LR+EL +QGA+PNK+A NPILI++ VIAVLV++ G GIFY
Sbjct:   54 AKKLAEQAAALR-----AEADAMEAEKKASMPAAXXXXXXXXXAMEEELP-RVEISSAMKEKLRRELEAQGANPNKAAANPILIISGVIAVLVILAGGGIFY 149
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BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Match: A0A0G4H860_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H860_VITBC)

HSP 1 Score: 67.8 bits (164), Expect = 9.410e-10
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  208 KQKISDDMKARLRKELTSQGADPNKSAGNPILIVAAVIAVLVVVGGQGIFY 360
            K +IS DMK RL +EL  QGA+PNKS GNP LI+  +IA LV++GG+GIFY
Sbjct:  102 KPEISPDMKKRLLRELEGQGANPNKSRGNPYLIIFVIIAALVILGGKGIFY 152
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BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Match: W7TC08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC08_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.320e-8
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  196 DLPPKQKISDDMKARLRKELTSQGADPNKSAGNPILIVAAVIAVLVVVGGQGIFY 360
            ++PP   +SD+M+ +L  E   QGAD N S GNPIL++A VI VLVV+GG+G FY
Sbjct:   79 EMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
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BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Match: A0A4D9CZL2_9STRA (Symplekin_C domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZL2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-6
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  217 ISDDMKARLRKELTSQGADPNKSAGNPILIVAAVIAVLVVVGGQGIFY 360
            +SD+M+ +L  E   QGAD N S GNPIL++A VI VLVV+GG+G FY
Sbjct:  166 LSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 213
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6568.15958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVB7_ECTSI1.140e-3563.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMY3_9STRA7.890e-1754.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2G0_9STRA1.010e-1259.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4D594_HETAK5.450e-1146.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4H860_VITBC9.410e-1062.75Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7TC08_9STRA1.320e-854.55Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZL2_9STRA1.360e-658.33Symplekin_C domain-containing protein n=2 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6568contigM-pyrifera_M_contig6568:9594..12801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog2880.D7FVB7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BW48@1,2T009@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000510.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1778
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6568.15958.1prot_M-pyrifera_M_contig6568.15958.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6568 11009..12786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.04191-UTR-M-pyrifera_M_contig6568:9593..110081622816545.04191-UTR-M-pyrifera_M_contig6568:9593..11008Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6568 9594..11008 -
1692278038.2833009-UTR-M-pyrifera_M_contig6568:9593..110081692278038.2833009-UTR-M-pyrifera_M_contig6568:9593..11008Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6568 9594..11008 -
1622816545.096141-UTR-M-pyrifera_M_contig6568:12786..128011622816545.096141-UTR-M-pyrifera_M_contig6568:12786..12801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6568 12787..12801 -
1692278038.3232944-UTR-M-pyrifera_M_contig6568:12786..128011692278038.3232944-UTR-M-pyrifera_M_contig6568:12786..12801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6568 12787..12801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.0541806-CDS-M-pyrifera_M_contig6568:11008..110221622816545.0541806-CDS-M-pyrifera_M_contig6568:11008..11022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6568 11009..11022 -
1692278038.2940974-CDS-M-pyrifera_M_contig6568:11008..110221692278038.2940974-CDS-M-pyrifera_M_contig6568:11008..11022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6568 11009..11022 -
1622816545.0687394-CDS-M-pyrifera_M_contig6568:11680..119351622816545.0687394-CDS-M-pyrifera_M_contig6568:11680..11935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6568 11681..11935 -
1692278038.3026838-CDS-M-pyrifera_M_contig6568:11680..119351692278038.3026838-CDS-M-pyrifera_M_contig6568:11680..11935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6568 11681..11935 -
1622816545.0838397-CDS-M-pyrifera_M_contig6568:12707..127861622816545.0838397-CDS-M-pyrifera_M_contig6568:12707..12786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6568 12708..12786 -
1692278038.311968-CDS-M-pyrifera_M_contig6568:12707..127861692278038.311968-CDS-M-pyrifera_M_contig6568:12707..12786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6568 12708..12786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6568.15958.1

>prot_M-pyrifera_M_contig6568.15958.1 ID=prot_M-pyrifera_M_contig6568.15958.1|Name=mRNA_M-pyrifera_M_contig6568.15958.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MTEGDALKAAQATAKKLNDQAAALREAAASSEADIRPPAEEVEVDESATT
AETAPEVRPEDLPPKQKISDDMKARLRKELTSQGADPNKSAGNPILIVAA
VIAVLVVVGGQGIFY*
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mRNA from alignment at M-pyrifera_M_contig6568:9594..12801-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6568.15958.1 ID=mRNA_M-pyrifera_M_contig6568.15958.1|Name=mRNA_M-pyrifera_M_contig6568.15958.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3208bp|location=Sequence derived from alignment at M-pyrifera_M_contig6568:9594..12801- (Macrocystis pyrifera P11B4 male)
CTCGGGTCGCTCCGCATGACCGAAGGAGACGCATTGAAAGCTGCGCAGGC
GACAGCTAAAAAATTGAACGACCAGGCCGCTGCTCTCCGCGAAGGTAAGC
TACCCTTTGAAGTGATGAGCATGATTGCATATTTCATTTCGTACGCAAGA
TTTATCGAGATGTTAGAGCATTCGGTTGTTGGATGAAGCGTGGAGCGAGT
CGTGACGAGACGGGCAGGTCAGCGGTCGCAGTCTCTAAGAACCACGAAGT
ACGTTGACACATCGTGGTGTTGAAACTGGTGTGTGTAGGATGGATAGGTA
ACAGCTGGAGATGATGTGGCAACTCCTTGTATTCGCCTGTAGGAGGCCTT
ACCATCTAGCATATCAGCCTACCGGTACTACTACTGTACGGGTGGTGCTC
GAAATGTACCCGTAGTAACTTCCGCCTTGTGCCCTGCTTCTCAGCAGATG
GTCGATCTGCGCTGTCCTTACAGACACCGCCGTCGTGGCACGTCCGAATG
AGAGTATTCGTATCCAAACACCCGAAGATGCGTGCGCCACTCCGCAGAAT
GCCGAATACAACAATATAGTGTTTTTCTAATGTCGAATGATTCGCCTCGC
AAGCCATCAGGTTCTTGCCAGGCGCACGGTTCGACAATCGTGTGAAACAT
AGAAGACAAAAAGCCCGCCAACGTTCGGTCCCTTATTACGGAGCTCTAAA
TTTGGAGCAATAATTTTAGCCTCAGTTGTGTAGGCACAGGCACGATTTCG
TGGATGGAAGCGGACGGCATGTTTGACGTTACACTCTTGTTTCTGATCCT
TTTCGACTCGTCTCCGAAATCGCGCCAACGCACCACGTCAAAACGTACAT
CATGCATTCGTGTCAGCGGCTGCCTCTAGCGAGGCAGATATCCGCCCTCC
GGCCGAGGAGGTGGAAGTAGACGAGAGCGCGACCACCGCCGAAACCGCAC
CCGAAGTCAGGCCCGAAGACCTGCCCCCGAAACAGAAGATTTCTGACGAC
ATGAAGGCCCGCCTGAGGAAAGAGCTCACTTCGCAAGGAGCAGACCCGAA
CAAGTCAGCGGGAAACCCCATCCTAATCGTGGCAGCCGTGATCGCTGTCC
TCGTTGTTGTCGGTGGCCAAGGTGAGACTCGTCGCAGTTCAATATGTGTT
GTCGCTGCATACTTCTGTTGTGTCGCTGTATACTTCGTATATTATTAATA
CTGTGCTGGGATGCCCACGCGTTGAGGTTGTAAGCTGCATATTTTAGGCG
AAAGCTAAGTACACTTGGAAGGCCGGCCTGCAGTAGGCATTGGCAATTGC
TAACGTGACTACCGGTATCTCGTACTGCAGTTGTACTTGTACTGGCGGTC
CCACTGGCTTGTTTTTCATAGTGGTCAATCCATGACGTCTGCCTGACCCC
GACAGCTTCACCTACTCCCCGGGGGCGCCAGTAAATGATACCAGTAAGGT
TTTGCGAAGGGCAACACATCGCAAAAAATGCAGGTGACGCCAAAGCCGAA
GTGGACGCACACCTCGGTAAGGTTTGCGATGATACCAATGCTACAGTATA
AATGGTAACGGTTTCCGCCGCTCGTCGCATTGAAGGCCCATGGGGTCATG
GGATCAAAGCCGCCCATCTTGCACAATCGCTCCCGCGAACTATAACACTG
CGAGTATTTTATACTGCAGTAGTATATATTATAGTGTTGCTGCTGTACGG
CCAAATCCGGCCTTCCATCATTCATCATGCATACCTTGGCGCTTTCTTGG
CCTATTTTTTTTTACGACATGAATGTCAGGTATCTTCTACTAATGTTCGT
CGCGATCGTCGCCATGGCTCCCCCAGCCAAAGCAGTGACCGCACGTCACC
TGCGAGAATTATGCTGGTGCCAACGGAGCCGGAAGCGGTAAGGGTTTCGA
TGCTGGTGGAGGTGGAATCGCGCGGGATCTGTACCCAGTTGGAAAATTAA
CCCTGAGGACGTCTCAGCACAGCACAGCTCAGCTCAGTGACGTGTCTGTC
GCTGTCAAGACTTACCGCTTGTGCTACCCCGAGTCACAGAGAGGCAAAGC
AGACTGCTATACATCGGAGAGTGCATGGATTTGGTTGGCGTTTGTGGGCG
CGTCCTTGAGGCGACAGGCTGGGCTGTTGGTAACGGTGTTGTTTTTTTAT
TATTAATAGCAGTTGTAACCATGGACGACGCCAACGCCATTCCGGGAATC
TACGATGTTTTGTTTCGTTTATGTTGATGAGTAAACCACACCTGCAGAAT
GTAGCGTACGATTCGAGGCAGAGTGTGTAGATGCAGTACAGAACTGGTAG
TTAGCACGACCTATCAGGTGTGGCACATTCTTGCTTGCAGTCTGTAGTGG
AGGCGTTACATGCCCTTGGCAAGCCGCTATTGTCACGATGGACTTGAGAA
AACGTACAGTAGGACCTATTTTATCGGCGTCCCTACGTTATTTTTTACGC
CTGATCCTCTTGTCGGTCGGTATAATTCCATCTGTATTCCATGTGGATAA
TAGTAGATGCTTCTCTTGACACTGTTGATCTGGCCTGGGATAGAAGCATA
CTCGTACGAGGTAGCGTTTTTAAAAGATATGTTGTGAGATGTATGTAGAT
CAAGGTACCCTGCACCAAGATTCAATTAATCGGTGAGACATATTTCACGA
CAAGCGTGACAAGCCTGAGCTATCTACAGCAGTAGCACGTAGAGAGTTGA
TAAGGGTACGCCGCAAGTAGAGATAACAAATAACCAACAGATAACCAAAA
GGTGCGACAGTGGAATGGTGTGTCCCATGACAATGAAGCTGTCCGAACAC
CACTTCACGAGTTTCCAGTGATGCGGGGGAGCGATGGCACTGAATCCTTC
TGTAGCAACATACATCATACAGCGGTATTGTCAAAAACTGAGCGTTTTCT
TGTCGTTTGTTTGATTGAAAAATCTGTGCGAATGCTGCTCGATCGATGCG
ATTGTGCTCAATACTGAATACTGAATACGAGTGCCTTTATTCGTTCGCGC
CAGATACATTATGTGTATATGCATATATATGCAATATTGAGAGCCCAGTG
TTATTTCTCAGTTCCAGCGTGCACTTTGTTTTTTTTTTCCACGAGCGTAA
TGAATCATGTTTCAATCTGTGGAGGTCATTTTGCAGAGTTGCAATAAATA
GGCGTTCCCAATATACCAATACATTTGATCATCACGGTTTCACGTAACGT
GTTGTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6568:9594..12801-

>mRNA_M-pyrifera_M_contig6568.15958.1 ID=mRNA_M-pyrifera_M_contig6568.15958.1|Name=mRNA_M-pyrifera_M_contig6568.15958.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig6568:9594..12801- (Macrocystis pyrifera P11B4 male)
ATGACCGAAGGAGACGCATTGAAAGCTGCGCAGGCGACAGCTAAAAAATT
GAACGACCAGGCCGCTGCTCTCCGCGAAGATGACCGAAGGAGACGCATTG
AAAGCTGCGCAGGCGACAGCTAAAAAATTGAACGACCAGGCCGCTGCTCT
CCGCGAAGCGGCTGCCTCTAGCGAGGCAGATATCCGCCCTCCGGCCGAGG
AGGTGGAAGTAGACGAGAGCGCGACCACCGCCGAAACCGCACCCGAAGTC
AGGCCCGAAGACCTGCCCCCGAAACAGAAGATTTCTGACGACATGAAGGC
CCGCCTGAGGAAAGAGCTCACTTCGCAAGGAGCAGACCCGAACAAGTCAG
CGGGAAACCCCATCCTAATCGTGGCAGCCGTGATCGCTGTCCTCGTTGTT
GTCGGTGGCCAAGCGGCTGCCTCTAGCGAGGCAGATATCCGCCCTCCGGC
CGAGGAGGTGGAAGTAGACGAGAGCGCGACCACCGCCGAAACCGCACCCG
AAGTCAGGCCCGAAGACCTGCCCCCGAAACAGAAGATTTCTGACGACATG
AAGGCCCGCCTGAGGAAAGAGCTCACTTCGCAAGGAGCAGACCCGAACAA
GTCAGCGGGAAACCCCATCCTAATCGTGGCAGCCGTGATCGCTGTCCTCG
TTGTTGTCGGTGGCCAAGGTATCTTCTACTAAGTATCTTCTACTAA
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