mRNA_M-pyrifera_M_contig65660.15955.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65660.15955.1
Unique NamemRNA_M-pyrifera_M_contig65660.15955.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: D3RY40_FERPA (2-dehydropantoate 2-reductase n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) TaxID=589924 RepID=D3RY40_FERPA)

HSP 1 Score: 55.1 bits (131), Expect = 4.750e-6
Identity = 40/144 (27.78%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    7 LSLPDGIREVVVHKAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAGYATLHHNSILQAFESIHKL 438
            + + + I+E +  KAVVN+V+NP+ A+    NGE  +           A+E+  +               A     +   + AV  VA+ +AEN+ S L  V KG+KTE++ INGV+    ++ G    +++ + +A ++I K+
Sbjct:  162 VEVVEDIKEKIWEKAVVNSVINPITAIFRVKNGEILRNEFLWEIAKKTAKESEEV---------------AREVGYEINAVEAVKIVAEKTAENISSMLQDVMKGRKTEIDFINGVIVKEGEKRGLDVCYNSFLWRAVKAIEKV 290          
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: A0A356EGC0_9SPIO (ApbA_C domain-containing protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A356EGC0_9SPIO)

HSP 1 Score: 52.8 bits (125), Expect = 1.010e-5
Identity = 38/126 (30.16%), Postives = 62/126 (49.21%), Query Frame = 1
Query:   46 KAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAGYATLHHNSILQAFE 423
            KA+VNAV+NP+AAL G  NG        +P+    A++   I           +     L    AP+   V    QA+A+N CS L  ++ G+ TE++ +NG +A   ++ G A   + ++ QA +
Sbjct:   36 KAIVNAVINPLAALAGIRNG-------LVPAQAGFAQQAEAIIDEAIA-----VAAAEGLSLPAAPLCDKVRQTCQATADNECSLLTDLKAGRPTEIDWLNGAIARLARRHGLAAPVNEALWQAIK 149          
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: A0A7W5AUR7_9BACL (2-dehydropantoate 2-reductase n=1 Tax=Paenibacillus phyllosphaerae TaxID=274593 RepID=A0A7W5AUR7_9BACL)

HSP 1 Score: 53.9 bits (128), Expect = 1.290e-5
Identity = 39/141 (27.66%), Postives = 72/141 (51.06%), Query Frame = 1
Query:   10 SLPDGIREVVVHKAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAGYATLHHNSILQAFESIH 432
            SL + +R  +  K ++NAV+NP+ A+ G +NGE      +   +  L +E+  +              LA LPE    +L+    V +A+A N  S L  VR G+ TE++ ING ++   ++ G+A   ++++    +++H
Sbjct:  189 SLSNEMRNRIYEKLLINAVINPLTAIFGVSNGELPAHPHRRKMMRALHQESERLLRQA---------GLAPLPEAWERLLA----VCEATAANESSMLRDVRAGRGTEIDWINGGISALAKRMGHAAPLNDAVTAMVKALH 316          
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: A0A3D9IVQ9_9BACL (2-dehydropantoate 2-reductase n=1 Tax=Cohnella lupini TaxID=1294267 RepID=A0A3D9IVQ9_9BACL)

HSP 1 Score: 53.1 bits (126), Expect = 2.340e-5
Identity = 39/140 (27.86%), Postives = 67/140 (47.86%), Query Frame = 1
Query:   13 LPDGIREVVVHKAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAGYATLHHNSILQAFESIH 432
            L   +++ ++ K +VNAV+NP  A+    NGE  Q   ++  V  L  ET  I                 L   ++ + +A+  V+QA++ N  S L  V  GK+TE+E ING +     + G  +  +N++    ++IH
Sbjct:  178 LSKHLKDEILRKLLVNAVINPTTAILRIRNGEITQSKERLEFVRSLFAETFGIL------------RSEGLSADESGLWNALLNVSQATSLNESSMLQDVLAGKETEIEFINGAIGRMAARQGKESPWNNAVTALVKAIH 305          
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: A0A1G3MUL2_9SPIR (2-dehydropantoate 2-reductase n=1 Tax=Spirochaetes bacterium GWC1_61_12 TaxID=1802180 RepID=A0A1G3MUL2_9SPIR)

HSP 1 Score: 52.8 bits (125), Expect = 3.310e-5
Identity = 38/126 (30.16%), Postives = 62/126 (49.21%), Query Frame = 1
Query:   46 KAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAGYATLHHNSILQAFE 423
            KA+VNAV+NP+AAL G  NG        +P+    A++   I           +     L    AP+   V    QA+A+N CS L  ++ G+ TE++ +NG +A   ++ G A   + ++ QA +
Sbjct:  200 KAIVNAVINPLAALAGIRNG-------LVPAQAGFAQQAEAIIDEAIA-----VAAAEGLSLPAAPLCDKVRQTCQATADNECSLLTDLKAGRPTEIDWLNGAIARLARRHGLAAPVNEALWQAIK 313          
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: A0A3E0U4Z8_9GAMM (2-dehydropantoate 2-reductase n=2 Tax=Thalassotalea euphylliae TaxID=1655234 RepID=A0A3E0U4Z8_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 4.630e-5
Identity = 37/131 (28.24%), Postives = 61/131 (46.56%), Query Frame = 1
Query:   43 HKAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAGYATLHHNSILQAFESIHK 435
             K  +N V+NP+ AL    NGE  Q    +P +  +A+E   +      T                 I+     VAQA+A NV STLA VR  + TE+ +ING +     +AG +   ++++++   ++ K
Sbjct:  217 QKLAINCVINPLTALNNVCNGEITQAQY-LPQISAIAKEVSEVASSQDIT------------LEANTIVEQALAVAQATANNVSSTLADVRADRTTEINAINGYICQLAIEAGISVPSNSALVEQVNALLK 334          
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: A0A2H5V5B3_9ARCH (2-dehydropantoate 2-reductase n=1 Tax=archaeon HR02 TaxID=2035438 RepID=A0A2H5V5B3_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 5.980e-5
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 1
Query:   10 SLPDGIREVVVHKAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAG 381
            S  + +   V+ K ++N+V+NP+ AL G  NGE  +       +  L EE     +L            A L   Q  + S VY   +A+ EN  S L  + +G++TE+E ING LA  L+ AG
Sbjct:  175 SAVENVYPEVLTKLIINSVINPLTALLGVRNGELLEVQELSWVIDRLVEEGVEACYLLG----------AKLSPGQ--VKSRVYEAIKATYENKSSMLQDIERGRRTEIEFINGALARILRAAG 286          
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Match: A0A2M7KSU0_9BACT (2-dehydropantoate 2-reductase n=1 Tax=Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20 TaxID=1973912 RepID=A0A2M7KSU0_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 8.110e-5
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   10 SLPDGIREVVVHKAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHLAEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCSTLAAVRKGKKTEVESINGVLATCLQQAG 381
            S+PD I E +  KA+VNAV+NP+ A+ G +NGE       +P++    +  H            +     H    Q  +L AV     A+A NV S    +  G++TE+++ING +    +QAG
Sbjct:  178 SVPD-IDEALWRKAIVNAVINPLTAIYGVSNGE-------LPTLSDAMDTAHAAIREATA----VAATRGHAFVEQE-LLEAVVQTCHATATNVSSMRQDIEAGRQTEIDAINGAIVRAGEQAG 288          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65660.15955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D3RY40_FERPA4.750e-627.782-dehydropantoate 2-reductase n=1 Tax=Ferroglobus ... [more]
A0A356EGC0_9SPIO1.010e-530.16ApbA_C domain-containing protein n=1 Tax=Spirochae... [more]
A0A7W5AUR7_9BACL1.290e-527.662-dehydropantoate 2-reductase n=1 Tax=Paenibacillu... [more]
A0A3D9IVQ9_9BACL2.340e-527.862-dehydropantoate 2-reductase n=1 Tax=Cohnella lup... [more]
A0A1G3MUL2_9SPIR3.310e-530.162-dehydropantoate 2-reductase n=1 Tax=Spirochaetes... [more]
A0A3E0U4Z8_9GAMM4.630e-528.242-dehydropantoate 2-reductase n=2 Tax=Thalassotale... [more]
A0A2H5V5B3_9ARCH5.980e-532.262-dehydropantoate 2-reductase n=1 Tax=archaeon HR0... [more]
A0A2M7KSU0_9BACT8.110e-531.452-dehydropantoate 2-reductase n=1 Tax=Armatimonade... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65660contigM-pyrifera_M_contig65660:644..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.896552-CDS-M-pyrifera_M_contig65660:643..10991622816544.896552-CDS-M-pyrifera_M_contig65660:643..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65660 644..1099 +
1692278038.2059386-CDS-M-pyrifera_M_contig65660:643..10991692278038.2059386-CDS-M-pyrifera_M_contig65660:643..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65660 644..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65660.15955.1prot_M-pyrifera_M_contig65660.15955.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65660 644..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65660.15955.1

>prot_M-pyrifera_M_contig65660.15955.1 ID=prot_M-pyrifera_M_contig65660.15955.1|Name=mRNA_M-pyrifera_M_contig65660.15955.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
RILSLPDGIREVVVHKAVVNAVLNPMAALRGWTNGEFAQEMLQIPSVCHL
AEETHPIFHLTHTTPPNILPHLAHLPETQAPILSAVYTVAQASAENVCST
LAAVRKGKKTEVESINGVLATCLQQAGYATLHHNSILQAFESIHKLNNTH
T*
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mRNA from alignment at M-pyrifera_M_contig65660:644..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65660.15955.1 ID=mRNA_M-pyrifera_M_contig65660.15955.1|Name=mRNA_M-pyrifera_M_contig65660.15955.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig65660:644..1099+ (Macrocystis pyrifera P11B4 male)
CGAATCCTTTCTCTTCCAGATGGAATTCGAGAAGTTGTAGTTCATAAGGC TGTGGTGAATGCTGTGCTAAATCCTATGGCAGCATTGCGAGGGTGGACGA ATGGTGAGTTTGCACAGGAAATGCTTCAGATTCCCTCGGTATGCCACTTG GCTGAAGAAACTCATCCCATCTTCCACCTCACTCACACCACACCCCCCAA CATCCTCCCCCACCTTGCACACCTCCCTGAAACACAAGCTCCTATTCTCT CTGCTGTCTATACCGTTGCGCAAGCATCAGCAGAAAACGTATGCTCCACT CTAGCAGCTGTCAGGAAAGGAAAGAAAACAGAGGTTGAGAGCATCAATGG AGTCCTTGCCACGTGTCTCCAACAAGCGGGATATGCTACTCTACACCACA ATTCCATCCTCCAAGCATTTGAATCCATCCATAAACTCAACAACACACAT ACCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65660:644..1099+

>mRNA_M-pyrifera_M_contig65660.15955.1 ID=mRNA_M-pyrifera_M_contig65660.15955.1|Name=mRNA_M-pyrifera_M_contig65660.15955.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig65660:644..1099+ (Macrocystis pyrifera P11B4 male)
CGAATCCTTTCTCTTCCAGATGGAATTCGAGAAGTTGTAGTTCATAAGGC
TGTGGTGAATGCTGTGCTAAATCCTATGGCAGCATTGCGAGGGTGGACGA
ATGGTGAGTTTGCACAGGAAATGCTTCAGATTCCCTCGGTATGCCACTTG
GCTGAAGAAACTCATCCCATCTTCCACCTCACTCACACCACACCCCCCAA
CATCCTCCCCCACCTTGCACACCTCCCTGAAACACAAGCTCCTATTCTCT
CTGCTGTCTATACCGTTGCGCAAGCATCAGCAGAAAACGTATGCTCCACT
CTAGCAGCTGTCAGGAAAGGAAAGAAAACAGAGGTTGAGAGCATCAATGG
AGTCCTTGCCACGTGTCTCCAACAAGCGGGATATGCTACTCTACACCACA
ATTCCATCCTCCAAGCATTTGAATCCATCCATAAACTCAACAACACACAT
ACCTAACGAATCCTTTCTCTTCCAGATGGAATTCGAGAAGTTGTAGTTCA
TAAGGCTGTGGTGAATGCTGTGCTAAATCCTATGGCAGCATTGCGAGGGT
GGACGAATGGTGAGTTTGCACAGGAAATGCTTCAGATTCCCTCGGTATGC
CACTTGGCTGAAGAAACTCATCCCATCTTCCACCTCACTCACACCACACC
CCCCAACATCCTCCCCCACCTTGCACACCTCCCTGAAACACAAGCTCCTA
TTCTCTCTGCTGTCTATACCGTTGCGCAAGCATCAGCAGAAAACGTATGC
TCCACTCTAGCAGCTGTCAGGAAAGGAAAGAAAACAGAGGTTGAGAGCAT
CAATGGAGTCCTTGCCACGTGTCTCCAACAAGCGGGATATGCTACTCTAC
ACCACAATTCCATCCTCCAAGCATTTGAATCCATCCATAAACTCAACAAC
ACACATACCTAA
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