mRNA_M-pyrifera_M_contig6563.15950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6563.15950.1
Unique NamemRNA_M-pyrifera_M_contig6563.15950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6563.15950.1 vs. uniprot
Match: A0A6H5JQT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT1_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 8.520e-66
Identity = 142/224 (63.39%), Postives = 159/224 (70.98%), Query Frame = 1 
Query:    1 MASAARRSTGNSLLRVAQACETLLAGFNSGQAAAVRSCLVSREHAVSLSERSA--GGGVGDRAAGTAST--PSELLLPLEDAMAHRRARPSLLLPAWRAIGFAVGTGTATLLPPEQSAKVGASIARAVTEQYDANIRSLYDAKIAEEEIEVKELFKAQRDEPSRAAFVPGIADAAAXXXXXXXXSDAPTAGTNSSNNASDAPSMAVTGTLKSALRMACTVTSKL 660
            M+  A RSTGNSLLRV+QACETLL+GFN+G+AAAV SC+VSR+HAV LSER     G V     G A    PS+ LLPLE AMA+RRARPSLLLPAWRA+GFAVGTG   LLP E SAKVGA+I+RAV E YD NIR++YDA+I  EE EVKELFKAQRDE SR A   G    A   XXXXXX                A SMAV GTLKSALR ACTVT+K+
Sbjct:    1 MSGVASRSTGNSLLRVSQACETLLSGFNNGKAAAVGSCVVSRKHAVKLSERDTTRAGDVDKGPEGEARHMGPSDHLLPLESAMANRRARPSLLLPAWRAVGFAVGTGATALLPAETSAKVGAAISRAVLEHYDENIRAMYDARIVNEEQEVKELFKAQRDELSRVALSSGAGPGAGGTXXXXXXXX---------XXXXXARSMAVAGTLKSALRAACTVTAKI 215
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BLAST of mRNA_M-pyrifera_M_contig6563.15950.1 vs. uniprot
Match: D7FX83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX83_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.620e-23
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:  235 MAHRRARPSLLLPAWRAIGFAVGTGTATLLPPEQSAKVGASIARAVTEQYDANIRSLYDAKIAEEEIEVK 444
            MA+RRARPSLLLPAWRA+GFAVGTG   LLP + SAKVGA+I+RAV E YD NIR++YDA+I  EE E +
Sbjct:    1 MANRRARPSLLLPAWRAVGFAVGTGATALLPADASAKVGAAISRAVLEHYDENIRAMYDARIVAEEHEAR 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6563.15950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQT1_9PHAE8.520e-6663.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX83_ECTSI3.620e-2370.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6563contigM-pyrifera_M_contig6563:1540..4233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquinone biosynthesis protein Coq7
Ec32 orthologEc-26_003900.1
Exons3
Model size663
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6563.15950.1prot_M-pyrifera_M_contig6563.15950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6563 1540..4233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.6733003-CDS-M-pyrifera_M_contig6563:1539..17641622816544.6733003-CDS-M-pyrifera_M_contig6563:1539..1764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6563 1540..1764 -
1692278038.0742393-CDS-M-pyrifera_M_contig6563:1539..17641692278038.0742393-CDS-M-pyrifera_M_contig6563:1539..1764Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6563 1540..1764 -
1622816544.6852107-CDS-M-pyrifera_M_contig6563:2326..25421622816544.6852107-CDS-M-pyrifera_M_contig6563:2326..2542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6563 2327..2542 -
1692278038.085662-CDS-M-pyrifera_M_contig6563:2326..25421692278038.085662-CDS-M-pyrifera_M_contig6563:2326..2542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6563 2327..2542 -
1622816544.6961572-CDS-M-pyrifera_M_contig6563:4011..42331622816544.6961572-CDS-M-pyrifera_M_contig6563:4011..4233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6563 4012..4233 -
1692278038.095755-CDS-M-pyrifera_M_contig6563:4011..42331692278038.095755-CDS-M-pyrifera_M_contig6563:4011..4233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6563 4012..4233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6563.15950.1

>prot_M-pyrifera_M_contig6563.15950.1 ID=prot_M-pyrifera_M_contig6563.15950.1|Name=mRNA_M-pyrifera_M_contig6563.15950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
MASAARRSTGNSLLRVAQACETLLAGFNSGQAAAVRSCLVSREHAVSLSE
RSAGGGVGDRAAGTASTPSELLLPLEDAMAHRRARPSLLLPAWRAIGFAV
GTGTATLLPPEQSAKVGASIARAVTEQYDANIRSLYDAKIAEEEIEVKEL
FKAQRDEPSRAAFVPGIADAAAGGGGGGGGSDAPTAGTNSSNNASDAPSM
AVTGTLKSALRMACTVTSKL*
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mRNA from alignment at M-pyrifera_M_contig6563:1540..4233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6563.15950.1 ID=mRNA_M-pyrifera_M_contig6563.15950.1|Name=mRNA_M-pyrifera_M_contig6563.15950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2694bp|location=Sequence derived from alignment at M-pyrifera_M_contig6563:1540..4233- (Macrocystis pyrifera P11B4 male)
ATGGCGAGCGCTGCCCGTAGGTCCACTGGAAACTCGCTGCTGCGCGTGGC
CCAGGCGTGCGAGACTCTGCTGGCAGGGTTTAACAGCGGACAAGCTGCTG
CAGTCAGAAGCTGCCTGGTGTCGAGAGAGCACGCTGTGTCCTTGAGCGAG
CGGAGCGCGGGGGGAGGGGTCGGGGACAGAGCCGCGGGGACAGCAAGTAC
GCCGAGCGAGCTTCTTTTGCCGGTACGTGCATGGTGGAGCCGCCAATGCT
CTCGCTGTTGTGCGGCCTTGAAGTGACGGTCATATTCACAGCTTTAAAGC
AGAATCTCCGATTGTTATCTTTCTTTGCTCTTCAACACGGGTATTAATGT
ATTAATATATGGTTGTGCTGCTGCTGTATTGTGCTCTCGTTATGCAAGTA
TATGTGAAAGAAGGGCAGCAACAAGAGCAACAGAAACATCTGAAAACATG
CTGTCAGCGCAATACTGACTACTACTCTGTTACCGTCCGCACCAGTCAAT
GCTGCTCCACACAGTAGTATTGCTGCTGCTGTACTTGATCGGCAGCAGCA
ACGTCGTTGCTGTCACGCACCCCAAGCCAAGCTGCGAGCACAACGAGCGC
ACAATGCTACAATACTACTTTAACCATAAATATAACACCCGTTTGGTGTT
TGACATCAACATTAGACGGTGATTATATTTACGGACATAGTTGGTTGTAC
GTTTTGCCTCGCGGCGACGGGTACATGCGTTCGTATAGGGAGAGCGCACC
GTATACAGCAGTACTGCTGTGAGCAGTACCGTACGTGCTGCTGCTATTAA
TATGAACTGCTGCACAGCGGTGACAACACACTGATGTCCCACACCCCAAG
CTGCGAGTAAAAACAAGCACACAAACATTGCCATACATTGCTATACATCG
CTACATTAGTTTGGGTCCGAAGTATTACGGGGGTCCATAGTTAATACGAC
CTTTGTTATACATAAAACCCTATATATTTACCTGTTTTTAATAACAATAT
TTGGTCCTATTTACTATGGTCCCCCGTGATAGTATTGATGGTAATCCAAG
GCCACAGCGACAAACCTCCGTCGCTGCCACGACAAGGCGCGTACGCACGA
TACTGCTGGCTGTTCCTGCTTCTACCGAGCAACAACACGATACATACGAT
ACAATACGCAAGAAACTAAAACTAGGGCAAGCCTTCGCATAGCCTTGGGC
CTATGCTGCAGTCGTATTTTGCTCGTCATCGTTGGCATTAGGCTGACTCT
GCTCTCCACGCAATGCGACGTAAGTGAGTGTCTCACTTGTACTGCTGTAG
AGGCAATCGAGGCATAGTGCTGATAGAGAGTCTGATATGTGTGGCAGAAG
TTGGAGTACGTACACACCCACGCTTTTACGCGCACACAGCAGTATGACGA
GCATATTTTATGTACGAGAACGAGCAGAGGTTTCTTCAAGCAACAACAAC
AATAACACACTCTCCCTCCCTCCCTTCCTCCCTCCCCCCCCCCCCAACCC
TCTCCCTCCCCNNNNNNNNNNACAACAACAATAACCCCCCCCCCCCCCCC
CCCCTCCCCCCCCCCCCCCCCCCCACCCCTCTCCCCCCCCCCCCCCCCCA
TCCATCTCTCCCTCCCGTCCCTTCCCGTCCACCCACCCACGCACTCCCAA
TCCCCTATCCTATGCTCCCCTGCCGCCTGCTCTCCCGCCAGCTGGAGGAC
GCGATGGCGCACCGACGAGCGCGACCGAGCCTTCTCCTCCCCGCCTGGCG
CGCGATCGGTTTCGCTGTGGGAACGGGGACCGCAACCCTGCTCCCCCCCG
AGCAATCGGCGAAGGTAGGAGCGTCCATCGCTCGCGCCGTCACGGAGCAG
TACGACGCCAACATCCGCAGCTTGTACGACGCTAAGATAGCGGAAGAGGA
GATCGAGGTGTGCGTAGAGGAGGAGAGGGGAGGGGGGGGGGAGAGAGAGG
ATGTGTTGTTGTTGTTGTTGTTGTTATTCCGAACAGCCAACCAACTCAAC
CAACGAACAAACCAACCCGATCAACCAACGCACAAACCAACCAACTTGTT
GGTTTCGACTCTTCTTCAATATGAAAATGTGACAGTTACTCATGTGCCGG
TTCGGGCTATCGGCAAAATATGAGGTGCGGTATATTATCGGGCATTTTGG
CTCTCGCCTTTTTGCTCTCGTGTGATTGAGTGATGGCCTGTTAAAAGCAC
TCTTCTCAGCCCCTACCCTGTTGGGACGAGCAATACTATTGACTTGGGAC
AAATATCGCATCCTAACCAACCAAACCAATCAAATAACACACCAGCCAAC
CAACTCAACCAAGCTAACAAACCGAACCAACCATACGACACACCAACCAA
CCATCCAATTCACCAACTAACTATGCAGCCAATCAACCAACCAACCATCT
AACCACGCAACGGGCTGGTCTCTCTTTCTCCCTTTCTCTCTCTCTATCTC
TCTTTCTCCTTCCTACAAGGTGAAAGAGCTGTTCAAGGCCCAGAGAGACG
AACCTTCTCGAGCTGCCTTCGTGCCAGGCATCGCCGACGCGGCCGCCGGC
GGTGGCGGCGGTGGCGGCGGCAGCGACGCGCCGACGGCAGGCACTAACAG
TAGTAACAATGCTAGCGACGCGCCATCCATGGCCGTCACAGGGACGCTCA
AGTCGGCCCTGCGTATGGCGTGCACCGTCACGTCAAAGCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6563:1540..4233-

>mRNA_M-pyrifera_M_contig6563.15950.1 ID=mRNA_M-pyrifera_M_contig6563.15950.1|Name=mRNA_M-pyrifera_M_contig6563.15950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig6563:1540..4233- (Macrocystis pyrifera P11B4 male)
ATGGCGAGCGCTGCCCGTAGGTCCACTGGAAACTCGCTGCTGCGCGTGGC
CCAGGCGTGCGAGACTCTGCTGGCAGGGTTTAACAGCGGACAAGCTGCTG
CAGTCAGAAGCTGCCTGGTGTCGAGAGAGCACGCTGTGTCCTTGAGCGAG
CGGAGCGCGGGGGGAGGGGTCGGGGACAGAGCCGCGGGGACAGCAAGTAC
GCCGAGCGAGCTTCTTTTGCCGATGGCGAGCGCTGCCCGTAGGTCCACTG
GAAACTCGCTGCTGCGCGTGGCCCAGGCGTGCGAGACTCTGCTGGCAGGG
TTTAACAGCGGACAAGCTGCTGCAGTCAGAAGCTGCCTGGTGTCGAGAGA
GCACGCTGTGTCCTTGAGCGAGCGGAGCGCGGGGGGAGGGGTCGGGGACA
GAGCCGCGGGGACAGCAAGTACGCCGAGCGAGCTTCTTTTGCCGCTGGAG
GACGCGATGGCGCACCGACGAGCGCGACCGAGCCTTCTCCTCCCCGCCTG
GCGCGCGATCGGTTTCGCTGTGGGAACGGGGACCGCAACCCTGCTCCCCC
CCGAGCAATCGGCGAAGGTAGGAGCGTCCATCGCTCGCGCCGTCACGGAG
CAGTACGACGCCAACATCCGCAGCTTGTACGACGCTAAGATAGCGGAAGA
GGAGATCGAGCTGGAGGACGCGATGGCGCACCGACGAGCGCGACCGAGCC
TTCTCCTCCCCGCCTGGCGCGCGATCGGTTTCGCTGTGGGAACGGGGACC
GCAACCCTGCTCCCCCCCGAGCAATCGGCGAAGGTAGGAGCGTCCATCGC
TCGCGCCGTCACGGAGCAGTACGACGCCAACATCCGCAGCTTGTACGACG
CTAAGATAGCGGAAGAGGAGATCGAGGTGAAAGAGCTGTTCAAGGCCCAG
AGAGACGAACCTTCTCGAGCTGCCTTCGTGCCAGGCATCGCCGACGCGGC
CGCCGGCGGTGGCGGCGGTGGCGGCGGCAGCGACGCGCCGACGGCAGGCA
CTAACAGTAGTAACAATGCTAGCGACGCGCCATCCATGGCCGTCACAGGG
ACGCTCAAGTCGGCCCTGCGTATGGCGTGCACCGTCACGTCAAAGCTCTG
AGTGAAAGAGCTGTTCAAGGCCCAGAGAGACGAACCTTCTCGAGCTGCCT
TCGTGCCAGGCATCGCCGACGCGGCCGCCGGCGGTGGCGGCGGTGGCGGC
GGCAGCGACGCGCCGACGGCAGGCACTAACAGTAGTAACAATGCTAGCGA
CGCGCCATCCATGGCCGTCACAGGGACGCTCAAGTCGGCCCTGCGTATGG
CGTGCACCGTCACGTCAAAGCTCTGA
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