mRNA_M-pyrifera_M_contig65583.15941.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: A0A485LLC5_9STRA (AP complex subunit sigma n=13 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LLC5_9STRA) HSP 1 Score: 223 bits (568), Expect = 2.790e-72 Identity = 104/156 (66.67%), Postives = 136/156 (87.18%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLES-ATRRA 465
MI+G+ I+NNHGKAR+ KFY+ + AE+Q IR+IY +SKR D +CNF+EG ++ WG +KL+YRHYATL+FVFAVD+ ES+LGILDL+QVFVE LDKCFENVCELDLIFHSD+VH++LDEIVMGGMVLET++++ILTA+ EMNKL++ +T+R+
Sbjct: 1 MIKGVLIVNNHGKARIVKFYEHVPDAEQQAVIRDIYTQVSKRPDTLCNFLEG-SVRYWGDGIKLIYRHYATLYFVFAVDKQESDLGILDLIQVFVETLDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNINEILTAVNEMNKLDANSTKRS 155
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: A0A024GA69_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GA69_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.060e-71 Identity = 103/154 (66.88%), Postives = 131/154 (85.06%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLESATRR 462
MI+GI I+NNHGK R+ KFY+ + E+Q IR+I+ +SKR D +CNF+EG + WG VKL+YRHYATL+FVFAVDQ ES+LGILDL+QVFVE LDKCFENVCELDLIFHSD+VH++LDEIVMGGMVLET++++ILTA+ EMN+L+SA+ +
Sbjct: 21 MIKGILIVNNHGKPRIVKFYEHVPDTEQQAVIRDIFTQVSKRPDSLCNFLEG-TVWYWGNGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVETLDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNINEILTAVNEMNRLDSASMK 173
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: A0A5A8CV74_CAFRO (AP complex subunit sigma n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CV74_CAFRO) HSP 1 Score: 220 bits (561), Expect = 2.940e-71 Identity = 107/158 (67.72%), Postives = 131/158 (82.91%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLESATRRAATK 474
MI+GIF+INNHGK RL K + MT E+Q+T+REI+G+LSKR+D VCNF+EGG++T++ KD KL+YRH+ATL+FV A D NES+LG+LDLVQVFVE LDK FENVCELDLIF SD VH ILDE+VMGGMVLETS +I+ A+T M +LE TR AA K
Sbjct: 1 MIKGIFVINNHGKPRLIKDFQRMTQPEQQQTVREIFGLLSKRSDNVCNFLEGGSVTTFSKDTKLIYRHFATLYFVVAADGNESDLGLLDLVQVFVETLDKKFENVCELDLIFRSDMVHHILDEVVMGGMVLETSGKEIMDAVTAMERLELETRSAAIK 158
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: D2VB79_NAEGR (AP complex subunit sigma n=3 Tax=Naegleria TaxID=5761 RepID=D2VB79_NAEGR) HSP 1 Score: 220 bits (561), Expect = 3.360e-71 Identity = 100/153 (65.36%), Postives = 131/153 (85.62%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLESATR 459
MI+GI ++NNHGKARL+KF++ + ++Q+ +RE Y ++ +R D VCNF+EGGA+ WGKD KL+YRHYATL+F+FAVDQNESELGILDL+QVFVE LDKCFENVCELDLIFHSD+VH+IL+EIV+GG+VLET+ +IL +I E N +E+ T+
Sbjct: 1 MIKGILVVNNHGKARLSKFFEQVPFEKQQQAVRECYSLVVRRPDNVCNFLEGGAI--WGKDTKLIYRHYATLYFIFAVDQNESELGILDLIQVFVETLDKCFENVCELDLIFHSDKVHYILEEIVIGGLVLETNKEEILMSIKEQNDIENRTK 151
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: F0WXY6_9STRA (AP2 complex subunit sigma putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WXY6_9STRA) HSP 1 Score: 220 bits (560), Expect = 1.510e-70 Identity = 102/154 (66.23%), Postives = 131/154 (85.06%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLESATRR 462
MI+GI I+NNHGK R+ KFY+ + E+Q IR+I+ +SKR D +CNF+EG ++ WG VKL+YRHYATL+FVFAVDQ ES+LGILDL+QVFVE LDKCFENVCELDLIFHSD+VH++LDEIVMGGMVLET++++IL A+ EMN+L+SA+ +
Sbjct: 38 MIKGILIVNNHGKPRIVKFYEHVPDTEQQAVIRDIFTQVSKRPDSLCNFLEG-SVWYWGDGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVETLDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNINEILIAVNEMNRLDSASMK 190
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: H3G8F4_PHYRM (AP complex subunit sigma n=22 Tax=Oomycota TaxID=4762 RepID=H3G8F4_PHYRM) HSP 1 Score: 218 bits (555), Expect = 2.660e-70 Identity = 103/159 (64.78%), Postives = 132/159 (83.02%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLESATRRAATKS 477
MI+GI I+NNHGK R+ KFY+ + AE+Q IR+IY +SKR D +CNF+EG + WG VKL+YRHYATL+FVFAVD+ ES+LGILDL+QVFVE LDK FENVCELDLIFHSD+VH+ LDEIVMGGMVLET+++++LTA+ EMN+L+S + R + +S
Sbjct: 1 MIKGILIVNNHGKPRIVKFYEHVPDAEQQAVIRDIYTQVSKRPDTLCNFLEG-TVRYWGNGVKLIYRHYATLYFVFAVDKQESDLGILDLIQVFVETLDKIFENVCELDLIFHSDKVHYALDEIVMGGMVLETNINEVLTAVNEMNRLDSVSSRRSLQS 158
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: A0A2R5GNW7_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNW7_9STRA) HSP 1 Score: 218 bits (554), Expect = 6.840e-70 Identity = 104/150 (69.33%), Postives = 128/150 (85.33%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALT-SWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLE 447
MIRGIFI+NN+G+ R KFY+++ A +Q IREI+ ++SKR+D VCNF+ G +L+ SWGK KL+YRHYATLFFVFA + ESELGILDL+QVFVE LDKCFE+VCELDLIFH+D+VH+ILDEIVMGG+VLET++HDIL AI E NKLE
Sbjct: 1 MIRGIFIVNNYGQPRCVKFYEAVDEATQQILIREIFLLVSKRSDNVCNFMAGDSLSGSWGKGTKLIYRHYATLFFVFACEDTESELGILDLIQVFVETLDKCFESVCELDLIFHADKVHYILDEIVMGGLVLETNMHDILVAINETNKLE 150
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: A0A0D2X2M7_CAPO3 (AP complex subunit sigma n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X2M7_CAPO3) HSP 1 Score: 207 bits (527), Expect = 5.370e-66 Identity = 101/149 (67.79%), Postives = 121/149 (81.21%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLE 447
MIRGI + NNHGK RL+KFY + +Q+ IRE + ++SKR+D VCNF+EGG L G D KL+YRHYATL+FVF VD +ESELGILDL+QVFVE LDKCFENVCELDLIFH D+VH+ILDEIVMGGMVLET++ +IL AI +KLE
Sbjct: 1 MIRGILVFNNHGKPRLSKFYQHYSEEMQQQIIRETFFLVSKRSDNVCNFLEGGTLIG-GSDSKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHYILDEIVMGGMVLETNMTEILGAIDSQSKLE 148
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA) HSP 1 Score: 207 bits (528), Expect = 5.590e-66 Identity = 99/156 (63.46%), Postives = 126/156 (80.77%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAE-KQRTIREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLESATRRA 465
MI+G+ I+NN GK RLAKFY S+T+ E +QR IR ++ +S R D CN++EG + WG ++KL+YRHYATL+FVFAVD ES+LGILDL+QVFVE LDKCFENVCELDLIFHSD+VH++LDEIVMGGMVLET++ IL AI + KL +A+ +A
Sbjct: 1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEG-IVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKA 155
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.130e-65 Identity = 97/159 (61.01%), Postives = 128/159 (80.50%), Query Frame = 1
Query: 1 MIRGIFIINNHGKARLAKFYDSMTTAEKQRT-IREIYGMLSKRTDGVCNFVEGGALTSWGKDVKLVYRHYATLFFVFAVDQNESELGILDLVQVFVEVLDKCFENVCELDLIFHSDRVHFILDEIVMGGMVLETSLHDILTAITEMNKLESATRRAATK 474
MI+GI I+NNHGK RL KFY S+T+ E Q++ IR ++ +++R D CN++EG + WG ++KL+YRHYATL+FVFAVD ES+LGILDL+QVFVE LDKCFENVCELDLIFHSDRVH++LDEIVMGGMVLET+++ +L AI + K+ ++ A+K
Sbjct: 1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEG-IIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSSLSQASK 158 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65583.15941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig65583.15941.1 >prot_M-pyrifera_M_contig65583.15941.1 ID=prot_M-pyrifera_M_contig65583.15941.1|Name=mRNA_M-pyrifera_M_contig65583.15941.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp MIRGIFIINNHGKARLAKFYDSMTTAEKQRTIREIYGMLSKRTDGVCNFVback to top mRNA from alignment at M-pyrifera_M_contig65583:525..1323+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig65583.15941.1 ID=mRNA_M-pyrifera_M_contig65583.15941.1|Name=mRNA_M-pyrifera_M_contig65583.15941.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=799bp|location=Sequence derived from alignment at M-pyrifera_M_contig65583:525..1323+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig65583:525..1323+ >mRNA_M-pyrifera_M_contig65583.15941.1 ID=mRNA_M-pyrifera_M_contig65583.15941.1|Name=mRNA_M-pyrifera_M_contig65583.15941.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig65583:525..1323+ (Macrocystis pyrifera P11B4 male)back to top |